BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0956 (PAB0956) DE:Hypothetical protein
         (168 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75056 hypothetical protein PAB0956 - Pyrococcus abyssi (st...   342  1e-93
pir||A71105 hypothetical protein PH0610 - Pyrococcus horikoshii ...   285  2e-76
pir||C71060 hypothetical protein PH1177 - Pyrococcus horikoshii ...    69  3e-11

>pir||C75056 hypothetical protein PAB0956 - Pyrococcus abyssi (strain Orsay)
           >gi|5458857|emb|CAB50344.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 168
           
 Score =  342 bits (868), Expect = 1e-93
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MVMFTGKAIIPVRVLKPFGNWKEGDMILLEDWKAKELWEMGIVEIIDETDSVIGEIDRIL 60
           MVMFTGKAIIPVRVLKPFGNWKEGDMILLEDWKAKELWEMGIVEIIDETDSVIGEIDRIL
Sbjct: 1   MVMFTGKAIIPVRVLKPFGNWKEGDMILLEDWKAKELWEMGIVEIIDETDSVIGEIDRIL 60

Query: 61  NEERKNAPLSAIPEGLYEKAEFYIYYLERYVKTGGEGNIDVVHTKLMKLKNLKKKYRLLK 120
           NEERKNAPLSAIPEGLYEKAEFYIYYLERYVKTGGEGNIDVVHTKLMKLKNLKKKYRLLK
Sbjct: 61  NEERKNAPLSAIPEGLYEKAEFYIYYLERYVKTGGEGNIDVVHTKLMKLKNLKKKYRLLK 120

Query: 121 EIRFNKILETVKLRPNRMEILSRLAPQERRIYLEISRIRNEWMGEENG 168
           EIRFNKILETVKLRPNRMEILSRLAPQERRIYLEISRIRNEWMGEENG
Sbjct: 121 EIRFNKILETVKLRPNRMEILSRLAPQERRIYLEISRIRNEWMGEENG 168


>pir||A71105 hypothetical protein PH0610 - Pyrococcus horikoshii
           >gi|3257016|dbj|BAA29699.1| (AP000003) 165aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 165
           
 Score =  285 bits (721), Expect = 2e-76
 Identities = 132/165 (80%), Positives = 152/165 (92%)

Query: 1   MVMFTGKAIIPVRVLKPFGNWKEGDMILLEDWKAKELWEMGIVEIIDETDSVIGEIDRIL 60
           M M TGKA+IPV+VL+ F NWKEGDMIL+EDWKA+ELWE+GIVEIIDE D VIGEID++L
Sbjct: 1   MEMLTGKALIPVKVLRSFENWKEGDMILIEDWKARELWELGIVEIIDEADKVIGEIDKVL 60

Query: 61  NEERKNAPLSAIPEGLYEKAEFYIYYLERYVKTGGEGNIDVVHTKLMKLKNLKKKYRLLK 120
            EERKNAP+SAIPE LYE+AEFYIYYLE+Y++ GGEGNIDV+HTKL KLKNLKKKY++LK
Sbjct: 61  EEERKNAPISAIPENLYERAEFYIYYLEKYIQKGGEGNIDVIHTKLTKLKNLKKKYKMLK 120

Query: 121 EIRFNKILETVKLRPNRMEILSRLAPQERRIYLEISRIRNEWMGE 165
           +IRF KILE V+LRPN MEILSRLAPQERRIYL+ISRIRNEW+GE
Sbjct: 121 DIRFKKILEAVRLRPNSMEILSRLAPQERRIYLQISRIRNEWIGE 165


>pir||C71060 hypothetical protein PH1177 - Pyrococcus horikoshii
           >gi|3257594|dbj|BAA30277.1| (AP000005) 157aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 157
           
 Score = 69.1 bits (166), Expect = 3e-11
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 10  IPVRVLKPFGNWKEGDMILLEDWKAKELWEMGIVEIIDETDSVIGEIDRILNEERKNAPL 69
           + VR ++ FG WK GD  +L+    + L+  G+VE +      I E+ ++   E KN   
Sbjct: 6   VSVRFVRDFGEWKAGDTTVLKVDDFRRLYAAGVVEPVG-FQRFIEEVAKLTYLEMKNTEP 64

Query: 70  SAIPEGLYEKAEFYIYYLERYVKTGGEGNIDVVHTKLMKLKNLKKKYRLLKEIRFNKILE 129
             +P+  Y+K +     L   + +G     DV  T L KLK  K   + LK  R  KI  
Sbjct: 65  QELPDNFYDKVKLIEEVLTARLLSG-----DV--TALDKLKRFKNHVKKLKMTRLEKIFY 117

Query: 130 TVKLRPNRMEILSRLAPQERRIY 152
              LRPN +EI ++L  +ER +Y
Sbjct: 118 RALLRPNSLEIENKLTREERELY 140


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.141    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64716162
Number of Sequences: 2977
Number of extensions: 2694445
Number of successful extensions: 7658
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7654
Number of HSP's gapped (non-prelim): 3
length of query: 168
length of database: 189,106,746
effective HSP length: 53
effective length of query: 115
effective length of database: 157,386,935
effective search space: 18099497525
effective search space used: 18099497525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)