BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0960 (PAB0960) DE:Hypothetical protein
(138 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75056 hypothetical protein PAB0960 - Pyrococcus abyssi (st... 275 2e-73
pir||E71175 hypothetical protein PH0601 - Pyrococcus horikoshii ... 255 2e-67
sp|Q57969|Y549_METJA HYPOTHETICAL PROTEIN MJ0549 >gi|2128017|pir... 140 7e-33
pir||G69198 conserved hypothetical protein MTH739 - Methanobacte... 127 4e-29
gi|11498349 conserved hypothetical protein [Archaeoglobus fulgid... 115 2e-25
pir||B64687 conserved hypothetical protein HP1338 - Helicobacter... 105 3e-22
pir||C71829 hypothetical protein jhp1257 - Helicobacter pylori (... 103 1e-21
sp|P28910|YHHG_ECOLI HYPOTHETICAL 15.1 KD PROTEIN IN NIKE-RHSB I... 92 3e-18
gb|AAK40964.1| Conserved hypothetical protein [Sulfolobus solfat... 87 6e-17
emb|CAB57643.1| (Y18930) hypothetical protein [Sulfolobus solfat... 87 6e-17
gb|AAG18766.1| (AE004981) Vng0147c [Halobacterium sp. NRC-1] 75 3e-13
pir||B69180 conserved hypothetical protein MTH603 - Methanobacte... 74 8e-13
>pir||F75056 hypothetical protein PAB0960 - Pyrococcus abyssi (strain Orsay)
>gi|5458860|emb|CAB50347.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 138
Score = 275 bits (695), Expect = 2e-73
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MDLVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITI 60
MDLVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITI
Sbjct: 1 MDLVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITI 60
Query: 61 VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL 120
VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL
Sbjct: 61 VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL 120
Query: 121 KGVKHGKLVMTSTGKELL 138
KGVKHGKLVMTSTGKELL
Sbjct: 121 KGVKHGKLVMTSTGKELL 138
>pir||E71175 hypothetical protein PH0601 - Pyrococcus horikoshii
>gi|3257007|dbj|BAA29690.1| (AP000002) 138aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 138
Score = 255 bits (644), Expect = 2e-67
Identities = 124/138 (89%), Positives = 135/138 (96%)
Query: 1 MDLVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITI 60
M+L+RFSISIP++LLEKFD+IIEEIGYENRSEAIRDLIRDFIIR EWEVGNEEVAGTITI
Sbjct: 1 MELIRFSISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRHEWEVGNEEVAGTITI 60
Query: 61 VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL 120
VYNHDEGDVVK LLDLQHEYLDEIIS+LHVHMDEHNCLEVIVVKG+AK+IKMIA +L+SL
Sbjct: 61 VYNHDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAKKIKMIADKLLSL 120
Query: 121 KGVKHGKLVMTSTGKELL 138
KGVKHGKLVMTSTGKEL+
Sbjct: 121 KGVKHGKLVMTSTGKELV 138
>sp|Q57969|Y549_METJA HYPOTHETICAL PROTEIN MJ0549 >gi|2128017|pir||E64368 hypothetical
protein homolog MJ0549 - Methanococcus jannaschii
>gi|1591254|gb|AAB98541.1| (U67504) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 141
Score = 140 bits (349), Expect = 7e-33
Identities = 67/137 (48%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Query: 2 DLVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNE-EVAGTITI 60
++ R SIS+P++LL +FD II E GY +RSEAIRD IRD+II+ +W E E AG+I++
Sbjct: 3 EMDRISISLPSKLLREFDEIIAERGYASRSEAIRDAIRDYIIKHKWIHSLEGERAGSISV 62
Query: 61 VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL 120
+YNH DV++++ ++QH Y D I++TLH+H+D +CLE I+V+G AKRI+ + RL +L
Sbjct: 63 IYNHHASDVMEKITEIQHNYTDIIVATLHLHLDHDHCLETILVRGDAKRIRELTDRLTAL 122
Query: 121 KGVKHGKLVMTSTGKEL 137
KGVK KL + G ++
Sbjct: 123 KGVKQVKLSVMVPGGQI 139
>pir||G69198 conserved hypothetical protein MTH739 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621828|gb|AAB85243.1| (AE000853) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 140
Score = 127 bits (317), Expect = 4e-29
Identities = 57/137 (41%), Positives = 98/137 (70%), Gaps = 3/137 (2%)
Query: 3 LVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREW--EVGNEEVAGTITI 60
++R S+S+P +LL +FD ++ + GY++RS+ IRD ++D+I+R +W E+ E + G I +
Sbjct: 1 MMRISMSLPKKLLNEFDEVLRDRGYQSRSKGIRDALKDYIVRYQWMNEMEGERI-GIIAV 59
Query: 61 VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL 120
+Y+H V+++L D+QH+Y + I + +HVHM E +CLEVIVVKG +I+ + ++M L
Sbjct: 60 IYDHHYTGVMEDLADIQHDYREYINAVMHVHMTERHCLEVIVVKGDVAKIRELTEKMMRL 119
Query: 121 KGVKHGKLVMTSTGKEL 137
KGV+H +L TST +++
Sbjct: 120 KGVEHVRLTSTSTEQKI 136
>gi|11498349 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7447630|pir||G69342 conserved hypothetical protein
AF0743 - Archaeoglobus fulgidus
>gi|2649872|gb|AAB90499.1| (AE001054) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 138
Score = 115 bits (286), Expect = 2e-25
Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
Query: 3 LVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREW-EVGNEEVAGTITIV 61
+ R +S+P LL++FDRII GY +RSEAIRD IR +I W E E+ G + ++
Sbjct: 5 ITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGVLVVL 64
Query: 62 YNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSLK 121
Y+H V L+DLQH++ + I S+ H+H++E CLE+I+VKGK +RIK++ ++ + +
Sbjct: 65 YDHHVKGVSDLLIDLQHDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKISAAR 124
Query: 122 GVKHGKLV 129
GV + KL+
Sbjct: 125 GVMNVKLI 132
>pir||B64687 conserved hypothetical protein HP1338 - Helicobacter pylori
(strain 26695) >gi|2314505|gb|AAD08380.1| (AE000635)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 148
Score = 105 bits (259), Expect = 3e-22
Identities = 46/134 (34%), Positives = 82/134 (60%), Gaps = 3/134 (2%)
Query: 3 LVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGN---EEVAGTIT 59
++RFS+S+ LL++ D I + GY +RSE +RD+IR+ ++ W N E +
Sbjct: 10 IIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLV 69
Query: 60 IVYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMS 119
++Y+H + ++ + ++D+QH ++ T H+HMDEHNCLE I+++G + I+ + +
Sbjct: 70 VIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGG 129
Query: 120 LKGVKHGKLVMTST 133
L+GVK KL S+
Sbjct: 130 LRGVKFAKLTKASS 143
>pir||C71829 hypothetical protein jhp1257 - Helicobacter pylori (strain J99)
>gi|4155871|gb|AAD06843.1| (AE001549) putative
[Helicobacter pylori J99]
Length = 148
Score = 103 bits (254), Expect = 1e-21
Identities = 46/134 (34%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 3 LVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITI-- 60
++RFS+S+ LL++ D I + GY +RSE +RD+IR+ ++ W N I +
Sbjct: 10 IIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPNDGSKIAVLV 69
Query: 61 -VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMS 119
+Y+H + ++ + ++D+QH ++ T H+HMDEHNCLE I+++G + I+ + +
Sbjct: 70 VIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEIQRLQLEIGG 129
Query: 120 LKGVKHGKLVMTST 133
L+GVK KL S+
Sbjct: 130 LRGVKFAKLTKASS 143
>sp|P28910|YHHG_ECOLI HYPOTHETICAL 15.1 KD PROTEIN IN NIKE-RHSB INTERGENIC REGION
>gi|1073620|pir||S47700 hypothetical 15.1K protein
(nike-rhsb intergenic region) - Escherichia coli
>gi|147625|gb|AAC61882.1| (L02370) unknown [Escherichia
coli] >gi|466617|gb|AAB18456.1| (U00039) alternate gene
name yhhG [Escherichia coli] >gi|1789892|gb|AAC76506.1|
(AE000423) orf, hypothetical protein [Escherichia coli
K12] >gi|11071483|emb|CAA70150.1| (Y08952) nickel
responsive regulator [Escherichia coli]
Length = 133
Score = 91.7 bits (224), Expect = 3e-18
Identities = 41/124 (33%), Positives = 75/124 (60%)
Query: 5 RFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITIVYNH 64
R +I++ +LLE D + + GY NRSEAIRD++R + + + + ++ VY H
Sbjct: 3 RVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEH 62
Query: 65 DEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSLKGVK 124
++ D+ ++ QH + D ++TLHVH++ +CLE+ V+KG ++ A +++ +GV+
Sbjct: 63 EKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVR 122
Query: 125 HGKL 128
HG L
Sbjct: 123 HGHL 126
>gb|AAK40964.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 133
Score = 87.4 bits (213), Expect = 6e-17
Identities = 45/131 (34%), Positives = 80/131 (60%), Gaps = 4/131 (3%)
Query: 1 MDLVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITI 60
M + SIS+P EL + + I G +RS+ + +R+++ E GNE + G I +
Sbjct: 1 MSAEKISISLPKELYRELEDFIIRKGIPDRSKIFQIALRNYL--DENRDGNEIIYGIINL 58
Query: 61 VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL 120
VY+H+E + L ++QHEY D IISTLH+H+ E C+E I VKG+ +++ + ++L +
Sbjct: 59 VYDHEEAS--EALTEIQHEYNDSIISTLHLHVSEKICIEAIAVKGEKRKLVELNNKLGQI 116
Query: 121 KGVKHGKLVMT 131
+G+ +L+++
Sbjct: 117 RGILKARLLIS 127
>emb|CAB57643.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 133
Score = 87.4 bits (213), Expect = 6e-17
Identities = 45/131 (34%), Positives = 80/131 (60%), Gaps = 4/131 (3%)
Query: 1 MDLVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRREWEVGNEEVAGTITI 60
M + SIS+P EL + + I G +RS+ + +R+++ E GNE + G I +
Sbjct: 1 MSAEKISISLPKELYRELEDFIIRKGIPDRSKIFQIALRNYL--DENRDGNEIIYGIINL 58
Query: 61 VYNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSL 120
VY+H+E + L ++QHEY D IISTLH+H+ E C+E I VKG+ +++ + ++L +
Sbjct: 59 VYDHEEAS--EALTEIQHEYNDSIISTLHLHVSEKICIEAIAVKGEKRKLVELNNKLGQI 116
Query: 121 KGVKHGKLVMT 131
+G+ +L+++
Sbjct: 117 RGILKARLLIS 127
>gb|AAG18766.1| (AE004981) Vng0147c [Halobacterium sp. NRC-1]
Length = 155
Score = 75.3 bits (182), Expect = 3e-13
Identities = 34/116 (29%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 7 SISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFIIRRE-WEVGNEEVAGTITIVYNHD 65
S+S+P ELLE+ D ++ GY RSE +R+ R+ + E ++ E+ G +T+V++++
Sbjct: 18 SVSMPEELLERLDDFADDHGYTGRSEVVREASRNLLGEFEDKKLEGRELMGVVTVVFDYE 77
Query: 66 EGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSLK 121
V ++++ L+HE+ + S H H+ H+C+E+ V++G + I ++ + K
Sbjct: 78 TTTVEEKMMHLRHEHEGLVASNFHSHVGGHHCMELFVLEGSLESISTFVGKIRATK 133
>pir||B69180 conserved hypothetical protein MTH603 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621683|gb|AAB85109.1| (AE000842) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 127
Score = 73.7 bits (178), Expect = 8e-13
Identities = 40/128 (31%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 3 LVRFSISIPAELLEKFDRIIEEIGYENRSEAIRDLIRDFII-RREWEVGNEEVAGTITIV 61
+V S+S+ +LLE+ D + +E+G+ RS+ IR R I +R N E+ + ++
Sbjct: 1 MVVVSVSLGEKLLEEIDALRDELGFSGRSDVIRVAARMLIDEKRNLHELNGEINAVLFLI 60
Query: 62 YNHDEGDVVKELLDLQHEYLDEIISTLHVHMDEHNCLEVIVVKGKAKRIKMIASRLMSLK 121
+ D+V ++ +H+Y D I + LH H+ + NCLE+ +++G++ R++ +A R ++
Sbjct: 61 HPRRVEDLVTKI---KHDYEDIIGTQLHSHLKDGNCLELFIIEGESMRVRELAERFLACG 117
Query: 122 GVKHGKLV 129
+KH KLV
Sbjct: 118 KMKHIKLV 125
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46978665
Number of Sequences: 2977
Number of extensions: 1762966
Number of successful extensions: 5733
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5714
Number of HSP's gapped (non-prelim): 12
length of query: 138
length of database: 189,106,746
effective HSP length: 55
effective length of query: 83
effective length of database: 156,189,961
effective search space: 12963766763
effective search space used: 12963766763
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)