BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0963 1403935 1404333 133 !not a gene!
         (133 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71174 hypothetical protein PH0595 - Pyrococcus horikoshii ...   122  2e-27

>pir||G71174 hypothetical protein PH0595 - Pyrococcus horikoshii
           >gi|3257001|dbj|BAA29684.1| (AP000002) 104aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 104
           
 Score =  122 bits (302), Expect = 2e-27
 Identities = 70/107 (65%), Positives = 75/107 (69%), Gaps = 3/107 (2%)

Query: 27  MGSSIGFSPSLSGILASIILTATLSTDIWVLPGAKPRFIVTSGFISSSIATSSFLALLKD 86
           MGSS G SPSLSGILASI+ TATLSTD+ VLPGAKPRF+V SG  SSS   S  LALLKD
Sbjct: 1   MGSSFGCSPSLSGILASIMFTATLSTDMCVLPGAKPRFMVISGLTSSSTLRSFSLALLKD 60

Query: 87  TGKTLPITLAPPISFPSKNFTISIVGFLSSPPKGSKPVTRTFTCSHP 133
           TG   P T         +  TISIVGFLSSPPKGSKPV + F  S P
Sbjct: 61  TGSISPTTSG---ILSLRASTISIVGFLSSPPKGSKPVNKIFISSPP 104


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.135    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47467071
Number of Sequences: 2977
Number of extensions: 1777288
Number of successful extensions: 4422
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4420
Number of HSP's gapped (non-prelim): 1
length of query: 133
length of database: 189,106,746
effective HSP length: 54
effective length of query: 79
effective length of database: 156,788,448
effective search space: 12386287392
effective search space used: 12386287392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)