BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0965 (PAB0965) DE:Hypothetical protein
(188 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75057 hypothetical protein PAB0965 - Pyrococcus abyssi (st... 384 e-106
pir||C71174 hypothetical protein PH0591 - Pyrococcus horikoshii ... 312 1e-84
gi|11498019 conserved hypothetical protein [Archaeoglobus fulgid... 186 2e-46
sp|Q57677|Y224_METJA HYPOTHETICAL PROTEIN MJ0224 >gi|2128185|pir... 141 7e-33
>pir||H75057 hypothetical protein PAB0965 - Pyrococcus abyssi (strain Orsay)
>gi|5458870|emb|CAB50357.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 188
Score = 384 bits (975), Expect = e-106
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MLAIGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHLVLIGFPFEGDSKEIAEEVAKNTT 60
MLAIGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHLVLIGFPFEGDSKEIAEEVAKNTT
Sbjct: 1 MLAIGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHLVLIGFPFEGDSKEIAEEVAKNTT 60
Query: 61 IGEGGKYLIELAKSGKFHAIDFPRKGFPPQFGEVIATTSKPSEDKVIKTIDVAKMALSGK 120
IGEGGKYLIELAKSGKFHAIDFPRKGFPPQFGEVIATTSKPSEDKVIKTIDVAKMALSGK
Sbjct: 61 IGEGGKYLIELAKSGKFHAIDFPRKGFPPQFGEVIATTSKPSEDKVIKTIDVAKMALSGK 120
Query: 121 SFLLVIGLGRHGLPKEMFKVARYHLDITDGMGVSLETCTAIGIIPAKIATLMEALKWMRG 180
SFLLVIGLGRHGLPKEMFKVARYHLDITDGMGVSLETCTAIGIIPAKIATLMEALKWMRG
Sbjct: 121 SFLLVIGLGRHGLPKEMFKVARYHLDITDGMGVSLETCTAIGIIPAKIATLMEALKWMRG 180
Query: 181 SKRYYRWY 188
SKRYYRWY
Sbjct: 181 SKRYYRWY 188
>pir||C71174 hypothetical protein PH0591 - Pyrococcus horikoshii
>gi|3256997|dbj|BAA29680.1| (AP000002) 185aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 185
Score = 312 bits (792), Expect = 1e-84
Identities = 147/184 (79%), Positives = 169/184 (90%), Gaps = 1/184 (0%)
Query: 1 MLAIGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHLVLIGFPFEG-DSKEIAEEVAKNT 59
ML IGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHL LIGFPFEG D +EIA EVA+NT
Sbjct: 2 MLTIGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHLALIGFPFEGKDEREIAGEVAENT 61
Query: 60 TIGEGGKYLIELAKSGKFHAIDFPRKGFPPQFGEVIATTSKPSEDKVIKTIDVAKMALSG 119
TIGEGGKYLI+L +SGKFH +DFP+KGFP QFGEV+ATTSKPS++K +KTI++A+MA+ G
Sbjct: 62 TIGEGGKYLIKLVESGKFHLLDFPKKGFPSQFGEVVATTSKPSKEKAVKTIEIAEMAVRG 121
Query: 120 KSFLLVIGLGRHGLPKEMFKVARYHLDITDGMGVSLETCTAIGIIPAKIATLMEALKWMR 179
KSF+ +IGLGRHGLPKE FK+A+YHLDITDG G+SLETCTAIGIIPAKIAT+MEALKWM+
Sbjct: 122 KSFIFLIGLGRHGLPKEAFKIAKYHLDITDGKGISLETCTAIGIIPAKIATVMEALKWMK 181
Query: 180 GSKR 183
+R
Sbjct: 182 RERR 185
>gi|11498019 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448854|pir||G69300 conserved hypothetical protein
AF0407 - Archaeoglobus fulgidus
>gi|2650224|gb|AAB90830.1| (AE001076) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 169
Score = 186 bits (467), Expect = 2e-46
Identities = 100/169 (59%), Positives = 118/169 (69%), Gaps = 9/169 (5%)
Query: 1 MLAIGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHLVLIGFPFEGDSKEIAEEVAKNTT 60
M++I L NTYD + HE HLR+IARAAP+ YAFNFHL L+ FPF KE+AEEVA TT
Sbjct: 1 MISICLVNTYDKLKKHEIHLRSIARAAPLCYAFNFHLALLDFPFWRSEKEVAEEVANYTT 60
Query: 61 IGEGGKYLIELAKSGKFHAIDFPRKGFPPQFGEVIATTSKPSEDKVIKTIDVAKMALSGK 120
IGEGGKYL+ LA+SGK H ID P FGEV+ATTSKP DKV+ +A K
Sbjct: 61 IGEGGKYLLYLAESGKLHLID----KIPAHFGEVVATTSKPDPDKVVNPDTLAAF----K 112
Query: 121 SFLLVIGLGRHGLPKEMFKVARYHLDITDGMGVSLETCTAIGIIPAKIA 169
S +IGLGR GLP+EM K A+YHLD+T GVSLETC+AIG I +A
Sbjct: 113 SATFLIGLGRRGLPREMLKSAKYHLDVT-RKGVSLETCSAIGAIAMLLA 160
>sp|Q57677|Y224_METJA HYPOTHETICAL PROTEIN MJ0224 >gi|2128185|pir||A64328 hypothetical
protein MJ0224 - Methanococcus jannaschii
>gi|1499001|gb|AAB98209.1| (U67478) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 169
Score = 141 bits (351), Expect = 7e-33
Identities = 81/167 (48%), Positives = 107/167 (63%), Gaps = 11/167 (6%)
Query: 2 LAIGLYNTYDPKRIHEAHLRAIARAAPVAYAFNFHLVLIGFPFEGDSKEIAEEVAKNTTI 61
L + LYN+YD R HEAH RAIARAAP+ YAF+ +L ++ FP ++ + + TTI
Sbjct: 7 LTLILYNSYDKTRWHEAHKRAIARAAPICYAFDCNLAIMDFPC-----KMEDILNIKTTI 61
Query: 62 GEGGKYLIELAKSGKFHAIDFPRKGFPPQFGEVIATTSKPSEDKVIKTIDVAKMALSGKS 121
G G+YL +L + +F +D F PQFG IA+TSKP E K I +D A + L K
Sbjct: 62 GNSGEYLEKLIEKNRFFIVD----KFLPQFGIPIASTSKPDEKKAITPLDTAYL-LKKKP 116
Query: 122 FLLVIGLGRHGLPKEMFKVARYHLDITDGMGVSLETCTAIGIIPAKI 168
+ +GLGRHGLPK++ + YHLD+T+ VSLETCTAIG IPA I
Sbjct: 117 IGVYVGLGRHGLPKDIMESCVYHLDVTE-KRVSLETCTAIGSIPAVI 162
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72533251
Number of Sequences: 2977
Number of extensions: 2934572
Number of successful extensions: 8344
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8333
Number of HSP's gapped (non-prelim): 4
length of query: 188
length of database: 189,106,746
effective HSP length: 52
effective length of query: 136
effective length of database: 157,985,422
effective search space: 21486017392
effective search space used: 21486017392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)