BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0974 (PAB0974) DE:TRANSMEMBRANE OLIGOSACCHARYL TRANSFERASE,
PUTATIVE.
(766 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75059 probable transmembrane oligosaccharyl transferase PA... 1546 0.0
pir||D71072 hypothetical protein PH1271 - Pyrococcus horikoshii ... 845 0.0
pir||C75100 hypothetical protein PAB1586 - Pyrococcus abyssi (st... 812 0.0
pir||C71248 hypothetical protein PH0242 - Pyrococcus horikoshii ... 127 6e-28
pir||E75212 oligosaccharyl transferase PAB2202 - Pyrococcus abys... 120 8e-26
>pir||B75059 probable transmembrane oligosaccharyl transferase PAB0974 -
Pyrococcus abyssi (strain Orsay)
>gi|5458880|emb|CAB50367.1| (AJ248287) TRANSMEMBRANE
OLIGOSACCHARYL TRANSFERASE, PUTATIVE. [Pyrococcus
abyssi]
Length = 766
Score = 1546 bits (3959), Expect = 0.0
Identities = 766/766 (100%), Positives = 766/766 (100%)
Query: 1 MRNWRILEPKIALPIVVLVGVTLRVIPLRFKYLLGYDPYFHLAYIEESLKAGKWFNFFTI 60
MRNWRILEPKIALPIVVLVGVTLRVIPLRFKYLLGYDPYFHLAYIEESLKAGKWFNFFTI
Sbjct: 1 MRNWRILEPKIALPIVVLVGVTLRVIPLRFKYLLGYDPYFHLAYIEESLKAGKWFNFFTI 60
Query: 61 ANGPWGFQIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYISLLK 120
ANGPWGFQIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYISLLK
Sbjct: 61 ANGPWGFQIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYISLLK 120
Query: 121 LYGKEKAFFASIFLALSFGHIFRSMANYYRGDNYMLFWYSLALAGIAYALRTKGYRRLVF 180
LYGKEKAFFASIFLALSFGHIFRSMANYYRGDNYMLFWYSLALAGIAYALRTKGYRRLVF
Sbjct: 121 LYGKEKAFFASIFLALSFGHIFRSMANYYRGDNYMLFWYSLALAGIAYALRTKGYRRLVF 180
Query: 181 YLVPTLASGISSVFWQAYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIIILSTAFGAI 240
YLVPTLASGISSVFWQAYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIIILSTAFGAI
Sbjct: 181 YLVPTLASGISSVFWQAYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIIILSTAFGAI 240
Query: 241 IANYLGEKFGYGMLGYNRQHIVSKLGIKLGKIRDAYLFIHLHYLVPISLGLLIILLFLSR 300
IANYLGEKFGYGMLGYNRQHIVSKLGIKLGKIRDAYLFIHLHYLVPISLGLLIILLFLSR
Sbjct: 241 IANYLGEKFGYGMLGYNRQHIVSKLGIKLGKIRDAYLFIHLHYLVPISLGLLIILLFLSR 300
Query: 301 FVKSKRAKVGIVIGLGTVSILIILLKFPALRGLLGIFDMFKSTPIMETRPTNFHDLWKAF 360
FVKSKRAKVGIVIGLGTVSILIILLKFPALRGLLGIFDMFKSTPIMETRPTNFHDLWKAF
Sbjct: 301 FVKSKRAKVGIVIGLGTVSILIILLKFPALRGLLGIFDMFKSTPIMETRPTNFHDLWKAF 360
Query: 361 SISIFLLPLFFLRFHPEKVKTEDFFLLGLIVPSLYMLLAWARFVFVGSLAVATMAGIGLV 420
SISIFLLPLFFLRFHPEKVKTEDFFLLGLIVPSLYMLLAWARFVFVGSLAVATMAGIGLV
Sbjct: 361 SISIFLLPLFFLRFHPEKVKTEDFFLLGLIVPSLYMLLAWARFVFVGSLAVATMAGIGLV 420
Query: 421 EGYSLVIQRRKSGKASRVALILLILLLIVNGAFTLKNCLSMRPLINKEWENALIWLKNNS 480
EGYSLVIQRRKSGKASRVALILLILLLIVNGAFTLKNCLSMRPLINKEWENALIWLKNNS
Sbjct: 421 EGYSLVIQRRKSGKASRVALILLILLLIVNGAFTLKNCLSMRPLINKEWENALIWLKNNS 480
Query: 481 NENDVILAWWDYGAWITYYSRRAPVAEIAPNPDVALYYLGARNRDWIMSLGVDYVIVSYY 540
NENDVILAWWDYGAWITYYSRRAPVAEIAPNPDVALYYLGARNRDWIMSLGVDYVIVSYY
Sbjct: 481 NENDVILAWWDYGAWITYYSRRAPVAEIAPNPDVALYYLGARNRDWIMSLGVDYVIVSYY 540
Query: 541 DFLKFSSIVRTASAQSGYNLIKRYWIAVLPLTSSYGGILIFEGGEYKIIAKPGDIWDVRI 600
DFLKFSSIVRTASAQSGYNLIKRYWIAVLPLTSSYGGILIFEGGEYKIIAKPGDIWDVRI
Sbjct: 541 DFLKFSSIVRTASAQSGYNLIKRYWIAVLPLTSSYGGILIFEGGEYKIIAKPGDIWDVRI 600
Query: 601 IIGDHVVYPRGLYVEYKGKVTESKLKYSSTDAYLYINLNYKYAILMNSETFNTPLIRLFI 660
IIGDHVVYPRGLYVEYKGKVTESKLKYSSTDAYLYINLNYKYAILMNSETFNTPLIRLFI
Sbjct: 601 IIGDHVVYPRGLYVEYKGKVTESKLKYSSTDAYLYINLNYKYAILMNSETFNTPLIRLFI 660
Query: 661 NASKPYELVYSDGGLIKILKLNHPNVKIRNMHNKIVFRFENATGTKLRILGFLDNGAMVF 720
NASKPYELVYSDGGLIKILKLNHPNVKIRNMHNKIVFRFENATGTKLRILGFLDNGAMVF
Sbjct: 661 NASKPYELVYSDGGLIKILKLNHPNVKIRNMHNKIVFRFENATGTKLRILGFLDNGAMVF 720
Query: 721 EREYSVENRTEFELPKSELPKEVEVIRYAYLKDGKVVDRGVFRVVN 766
EREYSVENRTEFELPKSELPKEVEVIRYAYLKDGKVVDRGVFRVVN
Sbjct: 721 EREYSVENRTEFELPKSELPKEVEVIRYAYLKDGKVVDRGVFRVVN 766
>pir||D71072 hypothetical protein PH1271 - Pyrococcus horikoshii
>gi|3257691|dbj|BAA30374.1| (AP000005) 758aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 758
Score = 845 bits (2160), Expect = 0.0
Identities = 415/766 (54%), Positives = 541/766 (70%), Gaps = 19/766 (2%)
Query: 7 LEPKIALPIVVLVGVTLRVIPLRFKYLLGYDPYFHLAYIEESLKAGKWFNFFTIANGPWG 66
++ + ++ I++LV + R+I RFKYLLGYDPYFHLAYIEE K GKW NF T A GPWG
Sbjct: 1 MKRRYSILIILLVAIFYRMITFRFKYLLGYDPYFHLAYIEEVNKVGKWINFLTFAGGPWG 60
Query: 67 FQIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYISLLKLYGKEK 126
+Q+K FHPLGLWMTP Y+Y+ LKVFG+S+ T FKITPVIFG LT++F Y+SLLKLY +++
Sbjct: 61 YQVKLFHPLGLWMTPLYLYKLLKVFGVSLTTTFKITPVIFGVLTVIFLYLSLLKLYDEKR 120
Query: 127 AFFASIFLALSFGHIFRSMANYYRGDNYMLFWYSLALAGIAYALRTK----GYRRLVFYL 182
AFF FLA+S+GH+FRSMANYYRGDNYMLFWYS+AL GI+ AL K Y+RL+FY
Sbjct: 121 AFFGGFFLAISYGHVFRSMANYYRGDNYMLFWYSVALLGISLALGIKKGKWKYKRLIFYT 180
Query: 183 VPTLASGISSVFWQAYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIIILSTAFGAIIA 242
+P LASG S++FWQAYYP+F FL N + LA+G+F+L K + LDS I+ILSTAFG ++A
Sbjct: 181 LPVLASGFSAIFWQAYYPIFAFLLSNALLLAVGAFILKKDKYLLDSIILILSTAFGVLLA 240
Query: 243 NYLGEKFGYGMLGYNR---QHIVSKLGIKLGKIRDAYLFIHLHYLVPISLGLLIILLFLS 299
NYLG FGYGMLGY + + + KLG++ G ++D YL +HL YLVPISL +++L+ L
Sbjct: 241 NYLGGIFGYGMLGYAKWLGKSVAKKLGLEFGYLKDVYLILHLKYLVPISLSFVLVLILLG 300
Query: 300 RFVKSKRAKVGIVIGLGT-VSILIILLKFPALRGLLGIFDMFKSTPIMETRPTNFHDLWK 358
K R + + +G+ + + I+I+ +F AL+ L F +FK PI+ET+PT+F DLW
Sbjct: 301 FLTKDIRIR-SLFLGIASFIGIIILFKRFEALKELSTGFGIFKEAPILETQPTSFKDLWA 359
Query: 359 AFSISIFLLPLFFLRFHPEKVKTEDFFLLGLIVPSLYMLLAWARFVFVGSLAVATMAGIG 418
AFS+S FL PLFF+RF +K + EDF LGLI+PS+YML W RF+F+GS+A+A M+GIG
Sbjct: 360 AFSLSFFLTPLFFIRF--KKPRVEDFLTLGLIIPSVYMLKTWTRFLFIGSMAIAIMSGIG 417
Query: 419 LVEGYSLVIQRRKSGKASRVALILLILLLIVNGAFTLKNCLSMRPLINKEWENALIWLKN 478
+VE Y + R KA +I L++L V + K S+ P +N+ WE AL WLKN
Sbjct: 418 IVELYEAIKPRLNGKKALATGIITLVILPGVIAGLSFKEVCSLHPEMNEAWERALKWLKN 477
Query: 479 NSNENDVILAWWDYGAWITYYSRRAPVAEIAPNPDVALYYLGARNRDWIMSLGVDYVIVS 538
NSNENDVILAWWD+G +ITYY+RR+P+A+ P+ VALY LG N +W ++LGVDYVIVS
Sbjct: 478 NSNENDVILAWWDWGHFITYYARRSPIAQGGPSVGVALYLLGKLNENWAINLGVDYVIVS 537
Query: 539 YYDFLKFSSIVRTASAQSGYNLIKRYWIAVLPLTSSYGGILIFEGGEYKIIAKPGDIWDV 598
YYDFLKF +I+ TA+ YN I+ Y + VLPL +S G LIFE Y+ I + W+
Sbjct: 538 YYDFLKFGAILSTANLSKRYN-IRGYGLVVLPLRASTGA-LIFENRGYRAIVRHDKSWNA 595
Query: 599 RIIIGDHVVYPRGLYVEYKGKVTESKLKYSSTDAYLYINLNYKYAILMNSETFNTPLIRL 658
II ++YPR LYVE+K V E K S+++ YLY+NLNY YAI MN FNT L+RL
Sbjct: 596 VIIYNGQMIYPRKLYVEHKEGVQEIKPPESNSNTYLYVNLNYGYAIFMNGNAFNTTLVRL 655
Query: 659 FINASKPYELVYSDGGLIKILKLNHPNVKIRNMHNKIVFRFENATGTKLRILGFLDNGAM 718
FI KPY+LVYSDGGLIKI KL HPNVK+ + ++ FEN GT L + FLDNG M
Sbjct: 656 FITPEKPYKLVYSDGGLIKIFKLEHPNVKVERRESNVILNFEN--GTSLGLYFFLDNGTM 713
Query: 719 VFEREYSVENRTEFELPKSELPKEVEVIRYAYLKDGKVVDRGVFRV 764
V + Y+V+ + EF +PK V RY + KVVDRGVFR+
Sbjct: 714 VLSKWYNVKGKNEFIVPK----VNASVARYVLKRGKKVVDRGVFRL 755
>pir||C75100 hypothetical protein PAB1586 - Pyrococcus abyssi (strain Orsay)
>gi|5458616|emb|CAB50104.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 765
Score = 812 bits (2075), Expect = 0.0
Identities = 410/765 (53%), Positives = 541/765 (70%), Gaps = 28/765 (3%)
Query: 8 EPKIALPIVVLVGVTLRVIPLRFKYLLGYDPYFHLAYIEESLKAGKWFNFFTIANGPWGF 67
+P++ALPI+++V + R++ RFKYLLGYDPY HLAYIEE+LKAG+WFNFFT+A PWG
Sbjct: 10 KPRVALPIIIVVSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFFTLAKAPWGM 69
Query: 68 QIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYISLLKLYGKEKA 127
Q++ FHPLGLWM PAYI+ K+F I + T FKITPVIFG LT+VF Y++LLKLYG+ KA
Sbjct: 70 QMRKFHPLGLWMIPAYIH---KIFNIPLYTAFKITPVIFGVLTVVFTYLALLKLYGERKA 126
Query: 128 FFASIFLALSFGHIFRSMANYYRGDNYMLFWYSLALAGIAYAL----RTKGYRRLVFYLV 183
F+AS+FL +S+GH+FRSMANYYRGDNYMLFWYSLA GIA AL R+ YRRL+FYL+
Sbjct: 127 FYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYRRLIFYLI 186
Query: 184 PTLASGISSVFWQAYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIIILSTAFGAIIAN 243
P + SG++S+FWQAYYP+F+FL N + L+ G+FLL + + LD ++ T GA +AN
Sbjct: 187 PGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFLLREDKYILDGLLLASLTVLGAFMAN 246
Query: 244 YLGEKFGYGMLGYNR---QHIVSKLGIKLGKIRDAYLFIHLHYLVPISLGLLIILLFLSR 300
YLG KFGYGM GY+ + + KL ++L I+DA+L ++L YLVP+ + ++ILL +S
Sbjct: 247 YLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGIVILLVVSY 306
Query: 301 FVKSKRAKVGIVIGLGTVSILIILLKFPAL-RGLLGIFDMFKSTPIMETRPTNFHDLWKA 359
F+KS +A+ + + + +LI+LLKF +L + L F MFK PI ET P F DLW A
Sbjct: 307 FLKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEVPIAETVPPKFSDLWAA 366
Query: 360 FSISIFLLPLFFLRFHPEKVKTEDFFLLGLIVPSLYMLLAWARFVFVGSLAVATMAGIGL 419
F++S+FL PLFFL F KV +DF LGLI+PSLYM L W RF+F+GSLAV MAGIGL
Sbjct: 367 FALSLFLSPLFFLEFRRPKV--QDFMFLGLIIPSLYMFLTWTRFLFIGSLAVTLMAGIGL 424
Query: 420 VEGYSLVIQRRKSGKASRVALILLILLLIVNGAFTLKNCLSMRPLINKEWENALIWLKNN 479
+ Y +++ K +ALILL++L VN +PLIN W NAL WL++N
Sbjct: 425 ISAYERILR-----KGLALALILLVILPGVNAGVGFNYVAKQKPLINDYWVNALRWLRSN 479
Query: 480 SNENDVILAWWDYGAWITYYSRRAPVAEIAPNPDVALYYLGARNRDWIMSLGVDYVIVSY 539
SNEND++LAWWDYG WITYY+RRAP+A+ +P+ VALY LG N W SLGVDYVIVSY
Sbjct: 480 SNENDIVLAWWDYGQWITYYARRAPIAQGSPSIGVALYLLGKLNYRWAESLGVDYVIVSY 539
Query: 540 YDFLKFSSIVRTASAQSGYNLIKRYWIAVLPLTSSYGGILIFEGGEYKIIAKPGDIWDVR 599
YDFLKF +IV TA+ YNL Y + V+PL G + +F G Y++I P + V+
Sbjct: 540 YDFLKFPAIVATANMHPKYNL-TGYALVVVPLVERAGDVFVFRGNGYEVIFTPRKV-VVK 597
Query: 600 IIIGDHVVYPRGLYVEYKGKVTESKLKYSSTDAYLYINLNYKYAILMNSETFNTPLIRLF 659
+G V PR +YVE K+ E +Y+ + YLY+NLNY Y+++MN + FNT L++LF
Sbjct: 598 TPVGTFV--PREVYVEEGYKIGE--YEYNGVN-YLYVNLNYGYSVVMNEKAFNTTLVQLF 652
Query: 660 INASKPYELVYSDGGLIKILKLNHPNVKIRNMHNKIVFRFENATGTKLRILGFLDNGAMV 719
+ KPY+LVYSDGG++K+ KL HPNV + N+I+ RF NATGT L I GFLDNG +V
Sbjct: 653 LGLEKPYKLVYSDGGIVKVFKLEHPNVAVER-GNRIILRFINATGTSLGIYGFLDNGTLV 711
Query: 720 FEREYSVENRTEFELPKSELPKEVEVIRYAYLKDGKVVDRGVFRV 764
F+R Y+V+ + EF LP +L V V+RY Y+K V+DRGVFRV
Sbjct: 712 FKRGYNVKGKEEFVLP-MDLNGSV-VVRYVYVKGKTVLDRGVFRV 754
>pir||C71248 hypothetical protein PH0242 - Pyrococcus horikoshii
>gi|3256631|dbj|BAA29314.1| (AP000001) 976aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 976
Score = 127 bits (315), Expect = 6e-28
Identities = 153/608 (25%), Positives = 263/608 (43%), Gaps = 107/608 (17%)
Query: 2 RNWRILEPKIALPIVVLVGVTLRVIPLRF----KYLLGYDPYFHLAYIEESLKAGKWFNF 57
R+ +L K+ +PI+V G + LR KY D ++H + LK G +
Sbjct: 19 RSTYVLLKKVLIPILVF-GFAIYAFYLRHLTAGKYFPDPDTFYHFEIYKLVLKEGLP-RY 76
Query: 58 FTIANGPWGFQIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYIS 117
+ +++ P+G I PLGL++ PA Y+ + +FG + F + P G L ++ Y+
Sbjct: 77 YPMSDAPFGSLIGE--PLGLYLLPAAFYKVVSLFGYNELQAFLLWPPFVGFLGVIAVYLL 134
Query: 118 LLKLYGKEKAFFASIFLALSFGHIFRSMANYYRGDN-YMLFWYSLALAGIAYALRTKGYR 176
K+ + + ++ L +S + R+ + RGD +M + ++A + Y + R
Sbjct: 135 GRKVLNEWTGLWGAVVLTVSTANFSRTFSGNARGDGPFMALFIFASVAMLYYLKESNKTR 194
Query: 177 RLVFYLVPTLASGISSVFWQ----AYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIII 232
++++ + L + IS W L F SL + L I L + K+ F+
Sbjct: 195 KIIYGTLFVLLTVISLGAWNGSPFGLMVLLGFASLQTIILFIFGKLEELKK-----FVKE 249
Query: 233 LSTAFGAIIANYLGEKFGYGMLGYNRQHIVSKLGIKLGKIRDAY-LFIHLHYLVPISLGL 291
A+ AI+A FGY + + K+G G IR A+ +F+ L + L
Sbjct: 250 FYPAYLAILA------FGYALTFPG----IVKIG---GFIRFAFEVFLGLIF-------L 289
Query: 292 LIILLFLSRFVKSKRAKVGIVIGLGTVSILIILLKF--------PALRGLLGIFDMFKST 343
L+I+L+ R++ K + V +I+LL F P L L+G ++ST
Sbjct: 290 LVIMLYGGRYLNYSDKKHRFL-----VVTIIVLLGFGGAYAYVGPKLFRLMG--GAYQST 342
Query: 344 PIMET----RPTNFHDLWKAFSIS---------------IFLLPLFFLRFHPEKVKTEDF 384
+ ET T D+ + + I L + F K E
Sbjct: 343 QVYETVQELAKTTIGDVKAYYGVESGNGLIFFLSIPGLLILLTKYLYDLFKKAKSDNETL 402
Query: 385 FLLGLIVPSLYMLLAWARFVFVGSLAVATMAGIGLVEGYSL-VIQRRKS--GKASRVALI 441
F L SLY+L RF+F+ S AVA GI + G+S+ VI++ K G + + ++
Sbjct: 403 FALVFYTMSLYLLYLAVRFLFLASYAVALFFGIFI--GFSMDVIEKMKENIGIKAALGIV 460
Query: 442 LLILLLIVNGAFTLKNCLSMRPLINKE-----WENALIWLKNNSNENDVILAWWDYGAWI 496
L +++L++ S R L N E WE AL WL++N+++ +WWDYG WI
Sbjct: 461 LSLMILVIPFVHAPVLARSARALKNTEIEVTGWEQALKWLRSNTSKYATATSWWDYGYWI 520
Query: 497 TYYSRRAPVAEIAPNPDVALYYLGARNRDWIMSL----------------GVDYVIVSYY 540
+ + N + AR+RD I++L ++Y I+
Sbjct: 521 E--------SSLLGNRRASADGGHARDRDHILALFLARDGNISEVDFESWELNYFIIYLN 572
Query: 541 DFLKFSSI 548
D+ KF++I
Sbjct: 573 DWAKFNAI 580
>pir||E75212 oligosaccharyl transferase PAB2202 - Pyrococcus abyssi (strain
Orsay) >gi|5457657|emb|CAB49148.1| (AJ248283)
OLIGOSACCHARYL TRANSFERASE [Pyrococcus abyssi]
Length = 976
Score = 120 bits (297), Expect = 8e-26
Identities = 151/623 (24%), Positives = 274/623 (43%), Gaps = 85/623 (13%)
Query: 10 KIALPIVVLVGVTLRVIPLRF----KYLLGYDPYFHLAYIEESLKAGKWFNFFTIANGPW 65
+I +P+ V +G + LR KY D ++H + LK G ++ +A P+
Sbjct: 28 RILIPLAV-IGFGIYAYYLRHLTAGKYFPDPDTFYHFEIYKLVLKEGLP-KYYPMAEAPF 85
Query: 66 GFQIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYISLLKLYGKE 125
G I PLGL++ PA Y+ + VFG + F + P G L ++ Y+ K+ +
Sbjct: 86 GSLIGE--PLGLYILPAIFYKVVSVFGYNEFQAFLMWPPFVGFLGVIAVYLLGRKVLNEW 143
Query: 126 KAFFASIFLALSFGHIFRSMANYYRGDNYMLFWYSLALAGIAYALRTKGYRRLVFY-LVP 184
+A++ L++S + R+ + RGD + + +L + Y L+ ++ + V
Sbjct: 144 AGLWAAVILSVSTANFSRTFSGNARGDGPFMTLFLFSLVAMLYYLKENDIKKKSLWGAVF 203
Query: 185 TLASGISSVFWQ-AYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIIILSTAFGAIIAN 243
L + IS W + + L V + F I F+ K + L F+ A+ AI+A
Sbjct: 204 VLLASISLGAWNGSPFGLMVLIGF-ASFQTIALFIFGKIKE-LKKFVKEFYPAYLAILA- 260
Query: 244 YLGEKFGYGMLGYNRQHIVSKLGIKLGKIRDAYLFIHLHYLVPISLGLLI-ILLFLSRFV 302
GYG+ ++K+G FI + V + L LL+ I+L+ +F+
Sbjct: 261 -----IGYGLTIPG----IAKIG----------GFIKFAFEVFLGLVLLVTIMLYGGKFL 301
Query: 303 -----KSKRAKVGIVIGLGTVSILIILLKFPALRGLLGIFDMFKSTPIMET----RPTNF 353
K + A V +++ LG + P L L+G ++ST + +T T
Sbjct: 302 NYSDKKHRFAVVAVIVLLGFAGAYAYV--GPKLFRLMG--GAYQSTQVYQTVQELAKTTL 357
Query: 354 HDLWKAFSIS-----IFLLPL--------FFLRFHPEKVKTEDFFLLGLI--VPSLYMLL 398
D+ + + +F L + +L +K ++ + ++L L+ + SLY+L
Sbjct: 358 SDIKLYYGVEGNNGLVFFLSIPGFLIILGLYLNALLKKSESSNEYMLSLVFYIMSLYLLS 417
Query: 399 AWARFVFVGSLAVATMAGIGLVEGYSL-VIQRRKSGKASRVAL-----ILLILLLIVNGA 452
RF+F+ S A+A +GI G+++ VI++ K + AL ++++++ I +G
Sbjct: 418 LAVRFLFLASYAIALFSGI--FAGFTMEVIEKMKENVGIKAALGIAIAVMILMVPITHGP 475
Query: 453 FTLKN--CLSMRPLINKEWENALIWLKNNSNENDVILAWWDYGAWITY----YSRRAPVA 506
+N L + + WE L WL N+++ +WWDYG WI + R +
Sbjct: 476 VIARNAKALKVSEIETTGWEQVLKWLNENTSKYATATSWWDYGYWIESSLLGHRRASADG 535
Query: 507 EIAPNPDVALYYLGARNRDW----IMSLGVDYVIVSYYDFLKFSSI-----VRTASAQSG 557
A + D L AR+ + S ++Y I+ D+ KF++I T +G
Sbjct: 536 GHARDRDHILALFLARDGNVSEVDFESWELNYFIIYLNDWAKFNAISYLGGAITRREYNG 595
Query: 558 YNLIKRYWIAVLPLTSSYGGILI 580
+ +LPL S GGI +
Sbjct: 596 DETGRGQVTTILPLQGS-GGIYV 617
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.146 0.446
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288087867
Number of Sequences: 2977
Number of extensions: 12734878
Number of successful extensions: 40883
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40856
Number of HSP's gapped (non-prelim): 5
length of query: 766
length of database: 189,106,746
effective HSP length: 52
effective length of query: 714
effective length of database: 157,985,422
effective search space: 112801591308
effective search space used: 112801591308
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 169 (70.2 bits)