BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0976 (PAB0976) DE:Hypothetical protein
         (200 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75059 hypothetical protein PAB0976 - Pyrococcus abyssi (st...   399  e-110
pir||G70325 transcription regulator TetR/AcrR family - Aquifex a...    73  2e-12

>pir||D75059 hypothetical protein PAB0976 - Pyrococcus abyssi (strain Orsay)
           >gi|5458882|emb|CAB50369.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 200
           
 Score =  399 bits (1015), Expect = e-110
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MDTRDKLVKAAKRLFAEKGFYRTTVDDIVKAAGVAKGTFYLYFSSKEEIIKEVAMMAMPY 60
           MDTRDKLVKAAKRLFAEKGFYRTTVDDIVKAAGVAKGTFYLYFSSKEEIIKEVAMMAMPY
Sbjct: 1   MDTRDKLVKAAKRLFAEKGFYRTTVDDIVKAAGVAKGTFYLYFSSKEEIIKEVAMMAMPY 60

Query: 61  MAFSKVINEGIVTARYKNLEEFLYALGKSFFEYYSDPDLRTLFFHVVSIKEAIPSLKEVH 120
           MAFSKVINEGIVTARYKNLEEFLYALGKSFFEYYSDPDLRTLFFHVVSIKEAIPSLKEVH
Sbjct: 61  MAFSKVINEGIVTARYKNLEEFLYALGKSFFEYYSDPDLRTLFFHVVSIKEAIPSLKEVH 120

Query: 121 NELCSRLISIGTKKILSFIGGDERLAEVAFRTFLGSLLHYLYSAECSVISQEEYLKDLVM 180
           NELCSRLISIGTKKILSFIGGDERLAEVAFRTFLGSLLHYLYSAECSVISQEEYLKDLVM
Sbjct: 121 NELCSRLISIGTKKILSFIGGDERLAEVAFRTFLGSLLHYLYSAECSVISQEEYLKDLVM 180

Query: 181 LMCEGLRKGEHQGDLNFLKG 200
           LMCEGLRKGEHQGDLNFLKG
Sbjct: 181 LMCEGLRKGEHQGDLNFLKG 200


>pir||G70325 transcription regulator TetR/AcrR family - Aquifex aeolicus
          >gi|2982980|gb|AAC06593.1| (AE000682) transcriptional
          regulator (TetR/AcrR family) [Aquifex aeolicus]
          Length = 179
          
 Score = 73.0 bits (176), Expect = 2e-12
 Identities = 30/53 (56%), Positives = 44/53 (82%)

Query: 1  MDTRDKLVKAAKRLFAEKGFYRTTVDDIVKAAGVAKGTFYLYFSSKEEIIKEV 53
          + TR++++KAA + FAEKGFY T +  IV++AGVA+GTFY+YF SKEE+ +E+
Sbjct: 6  VQTRERIIKAAAKEFAEKGFYNTQISHIVESAGVARGTFYIYFKSKEEVFEEI 58


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.140    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66591230
Number of Sequences: 2977
Number of extensions: 2500874
Number of successful extensions: 6271
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6269
Number of HSP's gapped (non-prelim): 2
length of query: 200
length of database: 189,106,746
effective HSP length: 55
effective length of query: 145
effective length of database: 156,189,961
effective search space: 22647544345
effective search space used: 22647544345
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 163 (67.9 bits)