BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0980 (PAB0980) DE:Hypothetical protein
         (152 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75061 hypothetical protein PAB0980 - Pyrococcus abyssi (st...   296  8e-80
pir||B71171 hypothetical protein PH0566 - Pyrococcus horikoshii ...   223  9e-58

>pir||C75061 hypothetical protein PAB0980 - Pyrococcus abyssi (strain Orsay)
           >gi|5458897|emb|CAB50384.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 152
           
 Score =  296 bits (750), Expect = 8e-80
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MVSKMVNLSMFSTQSSTILGNDRRLMVIEYLKSHSGEAEISELVDYICKSEGNERRRHRK 60
           MVSKMVNLSMFSTQSSTILGNDRRLMVIEYLKSHSGEAEISELVDYICKSEGNERRRHRK
Sbjct: 1   MVSKMVNLSMFSTQSSTILGNDRRLMVIEYLKSHSGEAEISELVDYICKSEGNERRRHRK 60

Query: 61  SVYVSLVQTHLPRLQREGIVNVKRSRVYLLDVPSEVHAFITIKNAKRNMWPIVYLIFSAV 120
           SVYVSLVQTHLPRLQREGIVNVKRSRVYLLDVPSEVHAFITIKNAKRNMWPIVYLIFSAV
Sbjct: 61  SVYVSLVQTHLPRLQREGIVNVKRSRVYLLDVPSEVHAFITIKNAKRNMWPIVYLIFSAV 120

Query: 121 ALSTSLLIASSEGVIFSLFLLALAVLHWVLTS 152
           ALSTSLLIASSEGVIFSLFLLALAVLHWVLTS
Sbjct: 121 ALSTSLLIASSEGVIFSLFLLALAVLHWVLTS 152


>pir||B71171 hypothetical protein PH0566 - Pyrococcus horikoshii
           >gi|3256972|dbj|BAA29655.1| (AP000002) 160aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 160
           
 Score =  223 bits (562), Expect = 9e-58
 Identities = 108/152 (71%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 1   MVSKMVNL-SMFSTQSSTILGNDRRLMVIEYLKSHSGEAEISELVDYICKSEGNERRRHR 59
           +V+KM NL  + S+ SSTILGNDRRL VIE+L+ H+ EAE+SELV+YICK+EGNE RRHR
Sbjct: 8   VVNKMANLIRLLSSPSSTILGNDRRLKVIEFLREHNNEAEVSELVEYICKAEGNEDRRHR 67

Query: 60  KSVYVSLVQTHLPRLQREGIVNVKRSRVYLLDVPSEVHAFITIKNAKRNMWPIVYLIFSA 119
           KSVYVSLVQTHLPRLQREGIVNV+R RVYLL VPSEVH FI +KN  +N+WP+ YLIFS+
Sbjct: 68  KSVYVSLVQTHLPRLQREGIVNVERGRVYLLGVPSEVHTFIELKNEGKNLWPLAYLIFSS 127

Query: 120 VALSTSLLIASSEGVIFSLFLLALAVLHWVLT 151
           ++L  SL +ASSEGVIFSL LLAL++ HW+ T
Sbjct: 128 ISLLVSLALASSEGVIFSLILLALSIFHWICT 159


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.134    0.373 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46257328
Number of Sequences: 2977
Number of extensions: 1591273
Number of successful extensions: 4070
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4068
Number of HSP's gapped (non-prelim): 2
length of query: 152
length of database: 189,106,746
effective HSP length: 57
effective length of query: 95
effective length of database: 154,992,987
effective search space: 14724333765
effective search space used: 14724333765
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)