BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0981 (PAB0981) DE:Hypothetical protein
(201 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75061 hypothetical protein PAB0981 - Pyrococcus abyssi (st... 422 e-117
pir||A71171 hypothetical protein PH0565 - Pyrococcus horikoshii ... 365 e-100
gi|11499663 A. fulgidus predicted coding region AF2081 [Archaeog... 255 3e-67
gi|11499662 A. fulgidus predicted coding region AF2080 [Archaeog... 123 1e-27
pir||H71170 hypothetical protein PH0564 - Pyrococcus horikoshii ... 110 1e-23
pir||E75061 hypothetical protein PAB0982 - Pyrococcus abyssi (st... 110 1e-23
>pir||D75061 hypothetical protein PAB0981 - Pyrococcus abyssi (strain Orsay)
>gi|5458898|emb|CAB50385.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 201
Score = 422 bits (1073), Expect = e-117
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MEKVNRYLLAIFGLVATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYI 60
MEKVNRYLLAIFGLVATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYI
Sbjct: 1 MEKVNRYLLAIFGLVATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYI 60
Query: 61 DENGKLVIDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWENLPIVVEINSTNSHIE 120
DENGKLVIDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWENLPIVVEINSTNSHIE
Sbjct: 61 DENGKLVIDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWENLPIVVEINSTNSHIE 120
Query: 121 LYGADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANGDSPGDTWTGSLKI 180
LYGADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANGDSPGDTWTGSLKI
Sbjct: 121 LYGADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANGDSPGDTWTGSLKI 180
Query: 181 RAYRLGTEPAYLVGKCGQGPI 201
RAYRLGTEPAYLVGKCGQGPI
Sbjct: 181 RAYRLGTEPAYLVGKCGQGPI 201
>pir||A71171 hypothetical protein PH0565 - Pyrococcus horikoshii
>gi|3256971|dbj|BAA29654.1| (AP000002) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 365 bits (927), Expect = e-100
Identities = 172/201 (85%), Positives = 186/201 (91%), Gaps = 1/201 (0%)
Query: 1 MEKVNRYLLAIFGLVATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYI 60
MEKVNRYL+A+FGL+A FGLVLGVGANF DYNASRSVHW+IV DDSELIDLTPIQ YSYI
Sbjct: 1 MEKVNRYLIAVFGLLAAFGLVLGVGANFSDYNASRSVHWNIVTDDSELIDLTPIQPYSYI 60
Query: 61 DEN-GKLVIDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWENLPIVVEINSTNSHI 119
+E GKLVIDFS NPNYPGYGNGVSP+SEYNFDEVFGVSNHLWEN+PIVVE+ STNSHI
Sbjct: 61 NETTGKLVIDFSANNPNYPGYGNGVSPASEYNFDEVFGVSNHLWENVPIVVELKSTNSHI 120
Query: 120 ELYGADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANGDSPGDTWTGSLK 179
E YGAD NVYSAYDG +ASASDSARDWVCFVVQPEDMVK+GMDLSANGD PG+ WTG+L+
Sbjct: 121 EFYGADRNVYSAYDGTMASASDSARDWVCFVVQPEDMVKIGMDLSANGDYPGEMWTGTLE 180
Query: 180 IRAYRLGTEPAYLVGKCGQGP 200
I+AYRLGTEPA LVGKCGQGP
Sbjct: 181 IKAYRLGTEPADLVGKCGQGP 201
>gi|11499663 A. fulgidus predicted coding region AF2081 [Archaeoglobus fulgidus]
>gi|7450227|pir||H69509 hypothetical protein AF2081 -
Archaeoglobus fulgidus >gi|2648457|gb|AAB89178.1|
(AE000960) A. fulgidus predicted coding region AF2081
[Archaeoglobus fulgidus]
Length = 196
Score = 255 bits (644), Expect = 3e-67
Identities = 117/190 (61%), Positives = 145/190 (75%), Gaps = 1/190 (0%)
Query: 9 LAIFGLVATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYIDENGKLVI 68
L I G + LV+GV A F DYNA RSVHW+I DD+ELIDL PIQ Y+YI +NG+LV+
Sbjct: 6 LGILGAMVALSLVIGVSATFSDYNADRSVHWNITTDDTELIDLKPIQPYAYIADNGELVV 65
Query: 69 DFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWENLPIVVEINSTNSHIELYGADGNV 128
DFSP NPNYPGYG+G+SP+SEYNFDEVF VSNHLWE++ IVV + S+++H+E Y +G V
Sbjct: 66 DFSPENPNYPGYGDGISPASEYNFDEVFAVSNHLWEDMWIVVRVTSSDTHVEFYSHEGGV 125
Query: 129 YSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANGDSPGDTWTGSLKIRAYRLGTE 188
Y+ G A+ASDSARD VCF + P ++GMDLSANGDSPGD W ++ ++AYRLGTE
Sbjct: 126 YAVDGGAAATASDSARDDVCFTLGPNSEKRIGMDLSANGDSPGDVWDETMTVKAYRLGTE 185
Query: 189 PAYLVGKCGQ 198
PA L CGQ
Sbjct: 186 PAEL-NNCGQ 194
>gi|11499662 A. fulgidus predicted coding region AF2080 [Archaeoglobus fulgidus]
>gi|7450229|pir||G69509 hypothetical protein AF2080 -
Archaeoglobus fulgidus >gi|2648458|gb|AAB89179.1|
(AE000960) A. fulgidus predicted coding region AF2080
[Archaeoglobus fulgidus]
Length = 177
Score = 123 bits (306), Expect = 1e-27
Identities = 76/164 (46%), Positives = 95/164 (57%), Gaps = 18/164 (10%)
Query: 1 MEKVNRYLLAIFGLVATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYI 60
M+K+ LL I GL T +G GANFR Y A RSV +I +DD+E IDLTPIQ Y+Y+
Sbjct: 1 MKKLAGLLLLIVGLTLT----IGAGANFRYYEAERSVTVNITSDDNEFIDLTPIQPYAYL 56
Query: 61 DENGKLVIDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWEN----LPIVVEINSTN 116
+ NGKL I+ SP NPNYPGYG+G+S ++ Y F+E+F VSN LWEN PI V
Sbjct: 57 N-NGKLTIEISPNNPNYPGYGDGMSVNTTYVFEEMFNVSNELWENEDADFPICV------ 109
Query: 117 SHIELYGADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVG 160
HI L DG S + G+ S + F V V VG
Sbjct: 110 -HISLNQGDG--ISFFAGDYDSPISGPGTQIHFTVYHNQPVPVG 150
>pir||H71170 hypothetical protein PH0564 - Pyrococcus horikoshii
>gi|3256970|dbj|BAA29653.1| (AP000002) 175aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 175
Score = 110 bits (273), Expect = 1e-23
Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 19/169 (11%)
Query: 11 IFGL---VATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYIDENGKLV 67
+FG+ +A L +G GANFR + A+R + IV+DDSELIDLTP+Q Y Y++ NGKL
Sbjct: 4 LFGIALFLAGLMLAVGAGANFRYFEANRDMSVAIVSDDSELIDLTPVQPYVYLN-NGKLT 62
Query: 68 IDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWEN----LPIVVEINSTNSHIELYG 123
++ S NP+YPGYG G+S S Y F+E+F VSN LWEN PI V + + S ++++
Sbjct: 63 VEISSNNPSYPGYGEGLSTDSIYVFEEMFNVSNELWENAQQDYPICVTVKA-ESPVKVFA 121
Query: 124 ADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANGDSPGD 172
Y+ +A + F V V VGM + G S G+
Sbjct: 122 ------GTYNSPIAGPDYQ----ISFTVYHGQPVSVGMIFNNTGLSSGE 160
>pir||E75061 hypothetical protein PAB0982 - Pyrococcus abyssi (strain Orsay)
>gi|5458899|emb|CAB50386.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 175
Score = 110 bits (273), Expect = 1e-23
Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 19/164 (11%)
Query: 11 IFGL---VATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYIDENGKLV 67
+FG+ +A L +G GANFR + A R + IV+DDSELIDLTP+Q Y Y++ NGKL
Sbjct: 4 LFGIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLN-NGKLT 62
Query: 68 IDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWEN----LPIVVEINSTNSHIELYG 123
++ S G+P YPGYG+G+S S Y F+E+F VSN LWEN PI V I + ++++
Sbjct: 63 VEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKA-QLPVKVFA 121
Query: 124 ADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANG 167
YD +A D+ + F V V VGM G
Sbjct: 122 ------GTYDSPIAGPDDT----ISFTVYHGQPVPVGMIFDNTG 155
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.138 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88402522
Number of Sequences: 2977
Number of extensions: 4087380
Number of successful extensions: 8007
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7999
Number of HSP's gapped (non-prelim): 8
length of query: 201
length of database: 189,106,746
effective HSP length: 52
effective length of query: 149
effective length of database: 157,985,422
effective search space: 23539827878
effective search space used: 23539827878
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 163 (67.9 bits)