BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0982 (PAB0982) DE:Hypothetical protein
(175 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75061 hypothetical protein PAB0982 - Pyrococcus abyssi (st... 362 1e-99
pir||H71170 hypothetical protein PH0564 - Pyrococcus horikoshii ... 317 5e-86
gi|11499662 A. fulgidus predicted coding region AF2080 [Archaeog... 242 3e-63
pir||A71171 hypothetical protein PH0565 - Pyrococcus horikoshii ... 114 8e-25
pir||D75061 hypothetical protein PAB0981 - Pyrococcus abyssi (st... 110 9e-24
gi|11499663 A. fulgidus predicted coding region AF2081 [Archaeog... 99 2e-20
>pir||E75061 hypothetical protein PAB0982 - Pyrococcus abyssi (strain Orsay)
>gi|5458899|emb|CAB50386.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 175
Score = 362 bits (920), Expect = 1e-99
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MNKLFGIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLNNGK 60
MNKLFGIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLNNGK
Sbjct: 1 MNKLFGIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLNNGK 60
Query: 61 LTVEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKAQLPVKVF 120
LTVEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKAQLPVKVF
Sbjct: 61 LTVEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKAQLPVKVF 120
Query: 121 AGTYDSPIAGPDDTISFTVYHGQPVPVGMIFDNTGLDLGGHQIQLDISAVAGECE 175
AGTYDSPIAGPDDTISFTVYHGQPVPVGMIFDNTGLDLGGHQIQLDISAVAGECE
Sbjct: 121 AGTYDSPIAGPDDTISFTVYHGQPVPVGMIFDNTGLDLGGHQIQLDISAVAGECE 175
>pir||H71170 hypothetical protein PH0564 - Pyrococcus horikoshii
>gi|3256970|dbj|BAA29653.1| (AP000002) 175aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 175
Score = 317 bits (804), Expect = 5e-86
Identities = 152/174 (87%), Positives = 163/174 (93%)
Query: 1 MNKLFGIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLNNGK 60
MNKLFGIALFLAGLMLAVGAGANFRYFEA+RDM+VAIVSDDSELIDLTPVQPYVYLNNGK
Sbjct: 1 MNKLFGIALFLAGLMLAVGAGANFRYFEANRDMSVAIVSDDSELIDLTPVQPYVYLNNGK 60
Query: 61 LTVEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKAQLPVKVF 120
LTVEISS +P YPGYG+GLSTDS+YVFEEMFNVSNELWENA QDYPICVT+KA+ PVKVF
Sbjct: 61 LTVEISSNNPSYPGYGEGLSTDSIYVFEEMFNVSNELWENAQQDYPICVTVKAESPVKVF 120
Query: 121 AGTYDSPIAGPDDTISFTVYHGQPVPVGMIFDNTGLDLGGHQIQLDISAVAGEC 174
AGTY+SPIAGPD ISFTVYHGQPV VGMIF+NTGL G HQ Q+D+SAVAGEC
Sbjct: 121 AGTYNSPIAGPDYQISFTVYHGQPVSVGMIFNNTGLSSGEHQFQIDVSAVAGEC 174
>gi|11499662 A. fulgidus predicted coding region AF2080 [Archaeoglobus fulgidus]
>gi|7450229|pir||G69509 hypothetical protein AF2080 -
Archaeoglobus fulgidus >gi|2648458|gb|AAB89179.1|
(AE000960) A. fulgidus predicted coding region AF2080
[Archaeoglobus fulgidus]
Length = 177
Score = 242 bits (610), Expect = 3e-63
Identities = 113/177 (63%), Positives = 133/177 (74%), Gaps = 2/177 (1%)
Query: 1 MNKLFGIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLNNGK 60
M KL G+ L + GL L +GAGANFRY+EA+R +TV I SDD+E IDLTP+QPY YLNNGK
Sbjct: 1 MKKLAGLLLLIVGLTLTIGAGANFRYYEAERSVTVNITSDDNEFIDLTPIQPYAYLNNGK 60
Query: 61 LTVEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKAQL--PVK 118
LT+EIS +P YPGYGDG+S ++ YVFEEMFNVSNELWEN D+PICV I +
Sbjct: 61 LTIEISPNNPNYPGYGDGMSVNTTYVFEEMFNVSNELWENEDADFPICVHISLNQGDGIS 120
Query: 119 VFAGTYDSPIAGPDDTISFTVYHGQPVPVGMIFDNTGLDLGGHQIQLDISAVAGECE 175
FAG YDSPI+GP I FTVYH QPVPVG IFDNT DLG ++ Q+ +SA AG CE
Sbjct: 121 FFAGDYDSPISGPGTQIHFTVYHNQPVPVGFIFDNTNKDLGSNEAQMSVSADAGACE 177
>pir||A71171 hypothetical protein PH0565 - Pyrococcus horikoshii
>gi|3256971|dbj|BAA29654.1| (AP000002) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 114 bits (282), Expect = 8e-25
Identities = 73/193 (37%), Positives = 103/193 (52%), Gaps = 29/193 (15%)
Query: 7 IALF--LAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLN--NGKLT 62
IA+F LA L +G GANF + A R + IV+DDSELIDLTP+QPY Y+N GKL
Sbjct: 9 IAVFGLLAAFGLVLGVGANFSDYNASRSVHWNIVTDDSELIDLTPIQPYSYINETTGKLV 68
Query: 63 VEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKAQLPVKVFAG 122
++ S+ +P YPGYG+G+S S Y F+E+F VSN LWEN PI V +K+ F G
Sbjct: 69 IDFSANNPNYPGYGNGVSPASEYNFDEVFGVSNHLWENV----PIVVELKSTNSHIEFYG 124
Query: 123 -------TYDSPIAGPDDT----ISFTVYHGQPVPVGMIFDNTG----------LDLGGH 161
YD +A D+ + F V V +GM G L++ +
Sbjct: 125 ADRNVYSAYDGTMASASDSARDWVCFVVQPEDMVKIGMDLSANGDYPGEMWTGTLEIKAY 184
Query: 162 QIQLDISAVAGEC 174
++ + + + G+C
Sbjct: 185 RLGTEPADLVGKC 197
>pir||D75061 hypothetical protein PAB0981 - Pyrococcus abyssi (strain Orsay)
>gi|5458898|emb|CAB50385.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 201
Score = 110 bits (273), Expect = 9e-24
Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 19/164 (11%)
Query: 4 LFGIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYLN-NGKLT 62
+FG+ +A L +G GANFR + A R + IV+DDSELIDLTP+Q Y Y++ NGKL
Sbjct: 11 IFGL---VATFGLVLGVGANFRDYNASRSVHWDIVADDSELIDLTPIQNYSYIDENGKLV 67
Query: 63 VEISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWENAGQDYPICVTIKA-QLPVKVFA 121
++ S G+P YPGYG+G+S S Y F+E+F VSN LWEN PI V I + ++++
Sbjct: 68 IDFSPGNPNYPGYGNGVSPSSEYNFDEVFGVSNHLWEN----LPIVVEINSTNSHIELYG 123
Query: 122 ------GTYDSPIAGPDDT----ISFTVYHGQPVPVGMIFDNTG 155
YD +A D+ + F V V VGM G
Sbjct: 124 ADGNVYSAYDGNLASASDSARDWVCFVVQPEDMVKVGMDLSANG 167
>gi|11499663 A. fulgidus predicted coding region AF2081 [Archaeoglobus fulgidus]
>gi|7450227|pir||H69509 hypothetical protein AF2081 -
Archaeoglobus fulgidus >gi|2648457|gb|AAB89178.1|
(AE000960) A. fulgidus predicted coding region AF2081
[Archaeoglobus fulgidus]
Length = 196
Score = 99.5 bits (244), Expect = 2e-20
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 6 GIALFLAGLMLAVGAGANFRYFEADRDMTVAIVSDDSELIDLTPVQPYVYL-NNGKLTVE 64
GI + L L +G A F + ADR + I +DD+ELIDL P+QPY Y+ +NG+L V+
Sbjct: 7 GILGAMVALSLVIGVSATFSDYNADRSVHWNITTDDTELIDLKPIQPYAYIADNGELVVD 66
Query: 65 ISSGHPEYPGYGDGLSTDSLYVFEEMFNVSNELWEN 100
S +P YPGYGDG+S S Y F+E+F VSN LWE+
Sbjct: 67 FSPENPNYPGYGDGISPASEYNFDEVFAVSNHLWED 102
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71711095
Number of Sequences: 2977
Number of extensions: 3263908
Number of successful extensions: 5614
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5607
Number of HSP's gapped (non-prelim): 8
length of query: 175
length of database: 189,106,746
effective HSP length: 51
effective length of query: 124
effective length of database: 158,583,909
effective search space: 19664404716
effective search space used: 19664404716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)