BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0983 (PAB0983) DE:SIGNAL PEPTIDASE related
(327 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75061 signal peptidase related PAB0983 - Pyrococcus abyssi... 663 0.0
pir||G71170 hypothetical protein PH0563 - Pyrococcus horikoshii ... 501 e-141
gi|11499660 A. fulgidus predicted coding region AF2078 [Archaeog... 251 9e-66
>pir||F75061 signal peptidase related PAB0983 - Pyrococcus abyssi (strain Orsay)
>gi|5458900|emb|CAB50387.1| (AJ248287) SIGNAL PEPTIDASE
related [Pyrococcus abyssi]
Length = 327
Score = 663 bits (1692), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MRASDLIIDLVILGIILPSVIGFMMGRPVFVSYAYSDSMTPTINRWDVFFINPLSKGDVG 60
MRASDLIIDLVILGIILPSVIGFMMGRPVFVSYAYSDSMTPTINRWDVFFINPLSKGDVG
Sbjct: 1 MRASDLIIDLVILGIILPSVIGFMMGRPVFVSYAYSDSMTPTINRWDVFFINPLSKGDVG 60
Query: 61 DIIVFNLSGKWTVHRVYAITESGYITKGDNNVATDQQDNKNPPIPRNQVIGKVITLGGRP 120
DIIVFNLSGKWTVHRVYAITESGYITKGDNNVATDQQDNKNPPIPRNQVIGKVITLGGRP
Sbjct: 61 DIIVFNLSGKWTVHRVYAITESGYITKGDNNVATDQQDNKNPPIPRNQVIGKVITLGGRP 120
Query: 121 IKIPKLGKYLQSKDSHYLAIGLVALGGVMLGSNEKRRRKRRGKVIDTGTIYIALSALLAF 180
IKIPKLGKYLQSKDSHYLAIGLVALGGVMLGSNEKRRRKRRGKVIDTGTIYIALSALLAF
Sbjct: 121 IKIPKLGKYLQSKDSHYLAIGLVALGGVMLGSNEKRRRKRRGKVIDTGTIYIALSALLAF 180
Query: 181 GVVFTGSIAWGEISIPYTSTLAGGQREGWYLPGSVVERNVTVENYAKFPMVMVVEGEDIR 240
GVVFTGSIAWGEISIPYTSTLAGGQREGWYLPGSVVERNVTVENYAKFPMVMVVEGEDIR
Sbjct: 181 GVVFTGSIAWGEISIPYTSTLAGGQREGWYLPGSVVERNVTVENYAKFPMVMVVEGEDIR 240
Query: 241 RVFKLEGGEERKIEITIDVPEETRVYNKVIKVYPYYPILPLKLIDWANSKSPYLPLLMEG 300
RVFKLEGGEERKIEITIDVPEETRVYNKVIKVYPYYPILPLKLIDWANSKSPYLPLLMEG
Sbjct: 241 RVFKLEGGEERKIEITIDVPEETRVYNKVIKVYPYYPILPLKLIDWANSKSPYLPLLMEG 300
Query: 301 LMVFLGLLALKPLLGEPEYINLGRFWS 327
LMVFLGLLALKPLLGEPEYINLGRFWS
Sbjct: 301 LMVFLGLLALKPLLGEPEYINLGRFWS 327
>pir||G71170 hypothetical protein PH0563 - Pyrococcus horikoshii
>gi|3256969|dbj|BAA29652.1| (AP000002) 330aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 330
Score = 501 bits (1275), Expect = e-141
Identities = 236/329 (71%), Positives = 282/329 (84%), Gaps = 3/329 (0%)
Query: 1 MRASDLIIDLVILGIILPSVIGFMMGRPVFVSYAYSDSMTPTINRWDVFFINPLSKGDVG 60
MR SD++I L+++GI++PSV+GF+MGRPVFVSYAYSDSM PTINRWDVFFINPLSKG+VG
Sbjct: 1 MRVSDILISLLLVGIVVPSVVGFLMGRPVFVSYAYSDSMVPTINRWDVFFINPLSKGEVG 60
Query: 61 DIIVFNLSGKWTVHRVYAITESGYITKGDNNVATDQQDNKNPPIPRNQVIGKVITLGGRP 120
DIIVFNLSG+WTVHRVYAITE GYITKGDNNVATDQQD KNPP+PR+QVIGKVITLGG+P
Sbjct: 61 DIIVFNLSGRWTVHRVYAITEEGYITKGDNNVATDQQDGKNPPVPRDQVIGKVITLGGKP 120
Query: 121 IKIPKLGKYLQSKDSHYLAIGLVALGGVMLGSNE--KRRRKRRGKVIDTGTIYIALSALL 178
+KIPKLG YL+S +S YLAI LV +GG+MLG+ KR+++RRGKVIDTGT+Y+ LSALL
Sbjct: 121 VKIPKLGMYLRSSNSQYLAITLVVIGGIMLGTGNKVKRKKRRRGKVIDTGTLYLMLSALL 180
Query: 179 AFGVVFTGSIAWGEISIPYTSTLAGGQREGWYLPGSVVERNVTVENYAKFPMVMVVEGED 238
AFG+VF GS WGEIS+ Y STL GGQREGWYLPGSVVE NVT++NYA+ PMV +V+G+
Sbjct: 181 AFGIVFAGSTLWGEISVTYVSTLGGGQREGWYLPGSVVEENVTIKNYARIPMVFIVKGKI 240
Query: 239 IR-RVFKLEGGEERKIEITIDVPEETRVYNKVIKVYPYYPILPLKLIDWANSKSPYLPLL 297
+ +FKL GGEER I+ I VPEETRVY + + VY YYP+LP I+ A S +PYLPL+
Sbjct: 241 VNDTIFKLGGGEERVIKGIIHVPEETRVYTERVNVYSYYPLLPTGTIERAYSINPYLPLI 300
Query: 298 MEGLMVFLGLLALKPLLGEPEYINLGRFW 326
+EGL+VFL L +KP LGEPEYI+LGRFW
Sbjct: 301 IEGLLVFLALAMIKPFLGEPEYISLGRFW 329
>gi|11499660 A. fulgidus predicted coding region AF2078 [Archaeoglobus fulgidus]
>gi|7483757|pir||E69509 hypothetical protein AF2078 -
Archaeoglobus fulgidus >gi|2648460|gb|AAB89181.1|
(AE000960) A. fulgidus predicted coding region AF2078
[Archaeoglobus fulgidus]
Length = 343
Score = 251 bits (634), Expect = 9e-66
Identities = 142/336 (42%), Positives = 201/336 (59%), Gaps = 14/336 (4%)
Query: 1 MRASDLIIDLVILGIILPSVIGFMMGRPVFVSYAYSDSMTPTINRWDVFFINPLSKGDVG 60
M+ SDL++ L++ +L S GF++ RPV +SY SDSMTPT+NR D+F INPL++
Sbjct: 4 MKLSDLLM-LILAVFLLASTAGFLLNRPVLLSYVTSDSMTPTLNRGDLFLINPLAEAKPD 62
Query: 61 DIIVFNLSGKWTVHRVYAITESGYITKGDNNVATDQQDNKNPPIPRNQVIGKVITLGGRP 120
DIIVFNL+G WTVHRV A T+ GYITKGD+N+ATDQQ N + R V G V+ L G P
Sbjct: 63 DIIVFNLNGHWTVHRVVAETDGGYITKGDHNIATDQQ-GSNSVVKRESVAGVVLVLLGNP 121
Query: 121 IKIPKLGKYLQSKDSHYLAIGL---VALGGVMLGSNEKRRRKRRGKV--IDTGTIYIALS 175
IKIP++G Y+Q + I L + +GG ML + ++ RRK+ KV + T Y+A+S
Sbjct: 122 IKIPEVGNYIQRLSGTTMNILLAVFMIVGGAMLLTGKEERRKKERKVYRLRYKTAYVAVS 181
Query: 176 ALLAFGVVFTGSIAWGEISIPYTSTLAGGQREGWYLPGSVVERNVTVENYAKFPMVMVVE 235
+ ++ + WG + Y STLAGGQ+EGWYLP S +R + ++N A FP++ +
Sbjct: 182 TISIAMLLLSVIATWGVVGFNYASTLAGGQKEGWYLPESEFDRQIEIKNNALFPLLYLFS 241
Query: 236 GEDIRRVFK-----LEGGEERKIEITIDVPEETRVYNKVIKVYPYYPILPLKLIDWANSK 290
E R K L GG+ ++ + + VP ETR+Y + +KV+ Y ILP LI
Sbjct: 242 SESERVELKDESKILSGGDRAELSVHVRVPSETRIYYEEVKVHAYPLILPSDLIIRMYGL 301
Query: 291 SPYLPL--LMEGLMVFLGLLALKPLLGEPEYINLGR 324
+P+LPL L LG++ GE E I L +
Sbjct: 302 NPFLPLAAFAVELAAVLGVIYYATRAGEEEVIRLSK 337
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.143 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127992169
Number of Sequences: 2977
Number of extensions: 5681761
Number of successful extensions: 13459
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13449
Number of HSP's gapped (non-prelim): 3
length of query: 327
length of database: 189,106,746
effective HSP length: 52
effective length of query: 275
effective length of database: 157,985,422
effective search space: 43445991050
effective search space used: 43445991050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)