BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0984 (PAB0984) DE:Hypothetical protein
         (133 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75061 hypothetical protein PAB0984 - Pyrococcus abyssi (st...   281  2e-75
pir||F71170 hypothetical protein PH0562 - Pyrococcus horikoshii ...   141  3e-33

>pir||G75061 hypothetical protein PAB0984 - Pyrococcus abyssi (strain Orsay)
           >gi|5458901|emb|CAB50388.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 133
           
 Score =  281 bits (712), Expect = 2e-75
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MELRKIIGILLIAMALLTLEVGSVSNFREASMEREVIVGYGDPFIDVSCETHVICCHQIG 60
           MELRKIIGILLIAMALLTLEVGSVSNFREASMEREVIVGYGDPFIDVSCETHVICCHQIG
Sbjct: 1   MELRKIIGILLIAMALLTLEVGSVSNFREASMEREVIVGYGDPFIDVSCETHVICCHQIG 60

Query: 61  VITVKNNLDEPIEVYLLRKRCHCTQRTYIGTIEPGHSENIYVLPGNYTIQAEWNSGGAKI 120
           VITVKNNLDEPIEVYLLRKRCHCTQRTYIGTIEPGHSENIYVLPGNYTIQAEWNSGGAKI
Sbjct: 61  VITVKNNLDEPIEVYLLRKRCHCTQRTYIGTIEPGHSENIYVLPGNYTIQAEWNSGGAKI 120

Query: 121 NVTCPCIRREHHD 133
           NVTCPCIRREHHD
Sbjct: 121 NVTCPCIRREHHD 133


>pir||F71170 hypothetical protein PH0562 - Pyrococcus horikoshii
           >gi|3256968|dbj|BAA29651.1| (AP000002) 128aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 128
           
 Score =  141 bits (352), Expect = 3e-33
 Identities = 74/123 (60%), Positives = 92/123 (74%), Gaps = 4/123 (3%)

Query: 4   RKIIGILLIAMALLTLEVGSVSNFREASMEREVIVGYGD-PFIDVSCETHVICCHQIGVI 62
           RK+IGILLI++ALL ++VGS S FRE SMER++IVGYGD PFIDV C+  + CC    VI
Sbjct: 3   RKVIGILLISLALLMVKVGSSSTFRETSMERQIIVGYGDDPFIDVQCK-FIRCCPG-NVI 60

Query: 63  TVKNNLDEPIEVYLLRKR-CHCTQRTYIGTIEPGHSENIYVLPGNYTIQAEWNSGGAKIN 121
           T+KNNLD PI   L+R+  C  T    IG I+PG+S+ IYV PGNYTI+A W+ GGAK+N
Sbjct: 61  TIKNNLDYPIYATLVRRSFCGHTCEVNIGRIDPGYSKKIYVFPGNYTIKASWDGGGAKLN 120

Query: 122 VTC 124
           V C
Sbjct: 121 VKC 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.141    0.439 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52365894
Number of Sequences: 2977
Number of extensions: 2115372
Number of successful extensions: 3527
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3523
Number of HSP's gapped (non-prelim): 2
length of query: 133
length of database: 189,106,746
effective HSP length: 48
effective length of query: 85
effective length of database: 160,379,370
effective search space: 13632246450
effective search space used: 13632246450
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)