BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0985 (PAB0985) DE:Hypothetical protein
         (305 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75061 hypothetical protein PAB0985 - Pyrococcus abyssi (st...   611  e-174
pir||E71170 hypothetical protein PH0561 - Pyrococcus horikoshii ...   435  e-121
gi|11499658 A. fulgidus predicted coding region AF2076 [Archaeog...   133  3e-30

>pir||H75061 hypothetical protein PAB0985 - Pyrococcus abyssi (strain Orsay)
           >gi|5458902|emb|CAB50389.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 305
           
 Score =  611 bits (1558), Expect = e-174
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MIKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYG 60
           MIKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYG
Sbjct: 1   MIKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYG 60

Query: 61  EFASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYK 120
           EFASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYK
Sbjct: 61  EFASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYK 120

Query: 121 GKLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIN 180
           GKLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIN
Sbjct: 121 GKLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIN 180

Query: 181 DAASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPR 240
           DAASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPR
Sbjct: 181 DAASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPR 240

Query: 241 KRKWAIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE 300
           KRKWAIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE
Sbjct: 241 KRKWAIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE 300

Query: 301 IRSEP 305
           IRSEP
Sbjct: 301 IRSEP 305


>pir||E71170 hypothetical protein PH0561 - Pyrococcus horikoshii
           >gi|3256967|dbj|BAA29650.1| (AP000002) 309aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 309
           
 Score =  435 bits (1107), Expect = e-121
 Identities = 204/302 (67%), Positives = 248/302 (81%), Gaps = 1/302 (0%)

Query: 2   IKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYGE 61
           IKD R+ YAF+GLF +FL LS+ASY +P SF R+V+  S+VEEG+L H  H  NSTIYG 
Sbjct: 4   IKDKRMQYAFIGLFLIFLTLSIASYMKPASFERRVLVESVVEEGVLTHTAHFTNSTIYGS 63

Query: 62  FASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYKG 121
           +ASL YYPTK+TDYI+G+Y+YR+ PKE+GNYTL+G+ SYYVTKGK K+YL+NET F Y G
Sbjct: 64  YASLEYYPTKVTDYILGEYKYRIIPKEEGNYTLEGITSYYVTKGKEKIYLLNETTFRYTG 123

Query: 122 KLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIND 181
            LTNG F + F VNL+KIN R +EIS+ALNLPRLSYE+ V+A + R NGTF+QEMPV+ND
Sbjct: 124 NLTNGRFMQDFKVNLTKINGREAEISKALNLPRLSYELTVIARVKRGNGTFTQEMPVVND 183

Query: 182 AASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPRK 241
           AASGLTYI+NT  KK N   KT+ E L+FLGM VS ARI+FP+L  I G++  + WEPRK
Sbjct: 184 AASGLTYIENTEEKKVNNKVKTINENLEFLGMPVSRARILFPVLTLIFGILTPVTWEPRK 243

Query: 242 RKW-AIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE 300
           +KW AIE RPTGIG+RVIV DMKSLKK++ IVGSPIIHYETDGI +YGVIDG+VLYEYWE
Sbjct: 244 KKWKAIEGRPTGIGQRVIVEDMKSLKKVSSIVGSPIIHYETDGIDIYGVIDGNVLYEYWE 303

Query: 301 IR 302
           +R
Sbjct: 304 LR 305


>gi|11499658 A. fulgidus predicted coding region AF2076 [Archaeoglobus fulgidus]
           >gi|7483755|pir||C69509 hypothetical protein AF2076 -
           Archaeoglobus fulgidus >gi|2648462|gb|AAB89183.1|
           (AE000960) A. fulgidus predicted coding region AF2076
           [Archaeoglobus fulgidus]
           Length = 303
           
 Score =  133 bits (331), Expect = 3e-30
 Identities = 87/291 (29%), Positives = 150/291 (50%), Gaps = 10/291 (3%)

Query: 16  ALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYGEFASLGYYPTKITDY 75
           AL  +++L ++S P    R VI   + ++G  KH   L N +IYG  ASL YYP  IT  
Sbjct: 18  ALLAVMALYAFSTPAESVRSVINEVVEQKGEFKHHAMLSNESIYGSKASLDYYPAGITGS 77

Query: 76  IVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYKGKLTNGMFEEKFTVN 135
           I G+Y Y ++P+  G Y +    +Y+V  G+ KV +  +T+   +G+   G        N
Sbjct: 78  IEGEYLYSISPERAGEYRMTVRTTYFVQDGRDKVQIWEDTLKDEQGEFA-GSLSIPIAFN 136

Query: 136 LSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVINDAASGLTYIDNTNIK 195
            +++ +R + + +   LPRL+   ++      EN +F+  +  + + +   ++ D++   
Sbjct: 137 FTQMGERLAAVKDGTALPRLTRITEIAFTAKAENESFNHTI-TLKEGSDLYSFSDDSKSI 195

Query: 196 KRNALTKTVKEELKFLGMRVSTARIVFPILAFISGV-VALLAWEPRKRK----WAIEARP 250
           +    TK V E   F G+ V++ARIV+  +A  + V VA+L  +  KR+      I  R 
Sbjct: 196 RTVYSTKEVTEN-SFGGLSVNSARIVYAAMAVFAAVPVAILNRDAFKRERRNPHVINGRR 254

Query: 251 TGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWEI 301
              G ++I+   + LKK+  +  SP++  E DG +VY +    V+YEY EI
Sbjct: 255 E--GAKIILESEEDLKKVFAMSDSPVVKTEIDGKAVYSIAAEGVVYEYREI 303


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.138    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112636316
Number of Sequences: 2977
Number of extensions: 4811051
Number of successful extensions: 11642
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11637
Number of HSP's gapped (non-prelim): 3
length of query: 305
length of database: 189,106,746
effective HSP length: 57
effective length of query: 248
effective length of database: 154,992,987
effective search space: 38438260776
effective search space used: 38438260776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)