BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0985 (PAB0985) DE:Hypothetical protein
(305 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75061 hypothetical protein PAB0985 - Pyrococcus abyssi (st... 611 e-174
pir||E71170 hypothetical protein PH0561 - Pyrococcus horikoshii ... 435 e-121
gi|11499658 A. fulgidus predicted coding region AF2076 [Archaeog... 133 3e-30
>pir||H75061 hypothetical protein PAB0985 - Pyrococcus abyssi (strain Orsay)
>gi|5458902|emb|CAB50389.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 305
Score = 611 bits (1558), Expect = e-174
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MIKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYG 60
MIKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYG
Sbjct: 1 MIKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYG 60
Query: 61 EFASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYK 120
EFASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYK
Sbjct: 61 EFASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYK 120
Query: 121 GKLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIN 180
GKLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIN
Sbjct: 121 GKLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIN 180
Query: 181 DAASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPR 240
DAASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPR
Sbjct: 181 DAASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPR 240
Query: 241 KRKWAIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE 300
KRKWAIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE
Sbjct: 241 KRKWAIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE 300
Query: 301 IRSEP 305
IRSEP
Sbjct: 301 IRSEP 305
>pir||E71170 hypothetical protein PH0561 - Pyrococcus horikoshii
>gi|3256967|dbj|BAA29650.1| (AP000002) 309aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 309
Score = 435 bits (1107), Expect = e-121
Identities = 204/302 (67%), Positives = 248/302 (81%), Gaps = 1/302 (0%)
Query: 2 IKDNRLSYAFLGLFALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYGE 61
IKD R+ YAF+GLF +FL LS+ASY +P SF R+V+ S+VEEG+L H H NSTIYG
Sbjct: 4 IKDKRMQYAFIGLFLIFLTLSIASYMKPASFERRVLVESVVEEGVLTHTAHFTNSTIYGS 63
Query: 62 FASLGYYPTKITDYIVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYKG 121
+ASL YYPTK+TDYI+G+Y+YR+ PKE+GNYTL+G+ SYYVTKGK K+YL+NET F Y G
Sbjct: 64 YASLEYYPTKVTDYILGEYKYRIIPKEEGNYTLEGITSYYVTKGKEKIYLLNETTFRYTG 123
Query: 122 KLTNGMFEEKFTVNLSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVIND 181
LTNG F + F VNL+KIN R +EIS+ALNLPRLSYE+ V+A + R NGTF+QEMPV+ND
Sbjct: 124 NLTNGRFMQDFKVNLTKINGREAEISKALNLPRLSYELTVIARVKRGNGTFTQEMPVVND 183
Query: 182 AASGLTYIDNTNIKKRNALTKTVKEELKFLGMRVSTARIVFPILAFISGVVALLAWEPRK 241
AASGLTYI+NT KK N KT+ E L+FLGM VS ARI+FP+L I G++ + WEPRK
Sbjct: 184 AASGLTYIENTEEKKVNNKVKTINENLEFLGMPVSRARILFPVLTLIFGILTPVTWEPRK 243
Query: 242 RKW-AIEARPTGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWE 300
+KW AIE RPTGIG+RVIV DMKSLKK++ IVGSPIIHYETDGI +YGVIDG+VLYEYWE
Sbjct: 244 KKWKAIEGRPTGIGQRVIVEDMKSLKKVSSIVGSPIIHYETDGIDIYGVIDGNVLYEYWE 303
Query: 301 IR 302
+R
Sbjct: 304 LR 305
>gi|11499658 A. fulgidus predicted coding region AF2076 [Archaeoglobus fulgidus]
>gi|7483755|pir||C69509 hypothetical protein AF2076 -
Archaeoglobus fulgidus >gi|2648462|gb|AAB89183.1|
(AE000960) A. fulgidus predicted coding region AF2076
[Archaeoglobus fulgidus]
Length = 303
Score = 133 bits (331), Expect = 3e-30
Identities = 87/291 (29%), Positives = 150/291 (50%), Gaps = 10/291 (3%)
Query: 16 ALFLLLSLASYSRPTSFSRQVIEGSIVEEGMLKHEGHLMNSTIYGEFASLGYYPTKITDY 75
AL +++L ++S P R VI + ++G KH L N +IYG ASL YYP IT
Sbjct: 18 ALLAVMALYAFSTPAESVRSVINEVVEQKGEFKHHAMLSNESIYGSKASLDYYPAGITGS 77
Query: 76 IVGDYRYRVTPKEDGNYTLKGLVSYYVTKGKGKVYLINETMFSYKGKLTNGMFEEKFTVN 135
I G+Y Y ++P+ G Y + +Y+V G+ KV + +T+ +G+ G N
Sbjct: 78 IEGEYLYSISPERAGEYRMTVRTTYFVQDGRDKVQIWEDTLKDEQGEFA-GSLSIPIAFN 136
Query: 136 LSKINKRRSEISEALNLPRLSYEIKVVADIDRENGTFSQEMPVINDAASGLTYIDNTNIK 195
+++ +R + + + LPRL+ ++ EN +F+ + + + + ++ D++
Sbjct: 137 FTQMGERLAAVKDGTALPRLTRITEIAFTAKAENESFNHTI-TLKEGSDLYSFSDDSKSI 195
Query: 196 KRNALTKTVKEELKFLGMRVSTARIVFPILAFISGV-VALLAWEPRKRK----WAIEARP 250
+ TK V E F G+ V++ARIV+ +A + V VA+L + KR+ I R
Sbjct: 196 RTVYSTKEVTEN-SFGGLSVNSARIVYAAMAVFAAVPVAILNRDAFKRERRNPHVINGRR 254
Query: 251 TGIGERVIVNDMKSLKKIAGIVGSPIIHYETDGISVYGVIDGHVLYEYWEI 301
G ++I+ + LKK+ + SP++ E DG +VY + V+YEY EI
Sbjct: 255 E--GAKIILESEEDLKKVFAMSDSPVVKTEIDGKAVYSIAAEGVVYEYREI 303
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112636316
Number of Sequences: 2977
Number of extensions: 4811051
Number of successful extensions: 11642
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11637
Number of HSP's gapped (non-prelim): 3
length of query: 305
length of database: 189,106,746
effective HSP length: 57
effective length of query: 248
effective length of database: 154,992,987
effective search space: 38438260776
effective search space used: 38438260776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)