BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0993 (PAB0993) DE:Hypothetical protein
(320 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75063 hypothetical protein PAB0993 - Pyrococcus abyssi (st... 612 e-174
pir||C71168 hypothetical protein PH0543 - Pyrococcus horikoshii ... 503 e-142
pir||F75103 probable purine NTPase PAB0812 - Pyrococcus abyssi (... 78 2e-13
gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae] 75 8e-13
gi|6320145 Integrin analogue gene; Uso1p [Saccharomyces cerevisi... 75 8e-13
pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae) 75 8e-13
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae] 75 8e-13
sp|P25386|USO1_YEAST INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO... 75 8e-13
gi|11498637 purine NTPase, putative [Archaeoglobus fulgidus] >gi... 73 3e-12
pir||F71190 probable chromosome assembly protein - Pyrococcus ho... 73 3e-12
pir||A72287 hypothetical protein TM1182 - Thermotoga maritima (s... 73 4e-12
pir||B70356 chromosome assembly protein homolog - Aquifex aeolic... 71 1e-11
pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|18509... 71 2e-11
pir||E70318 hypothetical protein aq_197 - Aquifex aeolicus >gi|2... 69 6e-11
pir||E71169 hypothetical protein PH0553 - Pyrococcus horikoshii ... 69 6e-11
>pir||F75063 hypothetical protein PAB0993 - Pyrococcus abyssi (strain Orsay)
>gi|5458916|emb|CAB50403.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 320
Score = 612 bits (1561), Expect = e-174
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MFGGKKEERVNWAFIQEHYPEVVEGLKELREWENVKNALADAERLEDYSILALAALVALK 60
MFGGKKEERVNWAFIQEHYPEVVEGLKELREWENVKNALADAERLEDYSILALAALVALK
Sbjct: 1 MFGGKKEERVNWAFIQEHYPEVVEGLKELREWENVKNALADAERLEDYSILALAALVALK 60
Query: 61 REMNLNIEDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVE 120
REMNLNIEDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVE
Sbjct: 61 REMNLNIEDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVE 120
Query: 121 KVLPRISELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFI 180
KVLPRISELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFI
Sbjct: 121 KVLPRISELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFI 180
Query: 181 DKYDSLVRENVELRRRLESREKIIKDLREKLAKMQESVKEMEEIEKKVNEYGKIADEIKE 240
DKYDSLVRENVELRRRLESREKIIKDLREKLAKMQESVKEMEEIEKKVNEYGKIADEIKE
Sbjct: 181 DKYDSLVRENVELRRRLESREKIIKDLREKLAKMQESVKEMEEIEKKVNEYGKIADEIKE 240
Query: 241 VRVKLAKLTGSYDVREALRIIEKNFIPKSKVEDLAKKLKALMEENEKLREENEKLKKDLE 300
VRVKLAKLTGSYDVREALRIIEKNFIPKSKVEDLAKKLKALMEENEKLREENEKLKKDLE
Sbjct: 241 VRVKLAKLTGSYDVREALRIIEKNFIPKSKVEDLAKKLKALMEENEKLREENEKLKKDLE 300
Query: 301 RITQAVKMLMEEGLIEAQEE 320
RITQAVKMLMEEGLIEAQEE
Sbjct: 301 RITQAVKMLMEEGLIEAQEE 320
>pir||C71168 hypothetical protein PH0543 - Pyrococcus horikoshii
>gi|3256949|dbj|BAA29632.1| (AP000002) 318aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 318
Score = 503 bits (1282), Expect = e-142
Identities = 251/320 (78%), Positives = 299/320 (93%), Gaps = 4/320 (1%)
Query: 1 MFGGKKEERVNWAFIQEHYPEVVEGLKELREWENVKNALADAERLEDYSILALAALVALK 60
MF GKKEE VNWAF+QEHYP+VVEGLKELREW+NVKNALADAERLEDYSILALAALVALK
Sbjct: 1 MFRGKKEEGVNWAFLQEHYPDVVEGLKELREWDNVKNALADAERLEDYSILALAALVALK 60
Query: 61 REMNLNIEDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVE 120
RE+N+++E+L+ERIYNVS+KLDSFKTETENN KRIE+EI+ IK+ +EELDRRTVVV NVE
Sbjct: 61 REVNIDLEELSERIYNVSNKLDSFKTETENNFKRIEKEINGIKEVVEELDRRTVVVANVE 120
Query: 121 KVLPRISELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFI 180
KVLPR+SELEERM SFP+E+AESLEKRLIKSLEK+VEELVEEKV +NN ++EF+
Sbjct: 121 KVLPRVSELEERMLSFPIEVAESLEKRLIKSLEKKVEELVEEKVGKANN----INLKEFL 176
Query: 181 DKYDSLVRENVELRRRLESREKIIKDLREKLAKMQESVKEMEEIEKKVNEYGKIADEIKE 240
DKYDSLVRENVEL+R+LE+RE+II++LR+KLAKMQESVKE+EEIEKKV+EYGK+A+++KE
Sbjct: 177 DKYDSLVRENVELKRKLENRERIIRELRDKLAKMQESVKEVEEIEKKVSEYGKLAEDMKE 236
Query: 241 VRVKLAKLTGSYDVREALRIIEKNFIPKSKVEDLAKKLKALMEENEKLREENEKLKKDLE 300
VRV+LAK+TGSYD++EALRIIE NFIPKS+VE+LAK +K LM+ENE+LR+ENEKLKKDLE
Sbjct: 237 VRVRLAKITGSYDLKEALRIIENNFIPKSRVEELAKSIKNLMKENEELRKENEKLKKDLE 296
Query: 301 RITQAVKMLMEEGLIEAQEE 320
RITQAVK L++EGLIE +E
Sbjct: 297 RITQAVKTLVDEGLIEPPQE 316
>pir||F75103 probable purine NTPase PAB0812 - Pyrococcus abyssi (strain Orsay)
>gi|5458643|emb|CAB50131.1| (AJ248286) purine NTPase,
putative [Pyrococcus abyssi]
Length = 880
Score = 77.6 bits (188), Expect = 2e-13
Identities = 89/368 (24%), Positives = 169/368 (45%), Gaps = 80/368 (21%)
Query: 15 IQEHYPEVVEGLKELREWENVKNALAD----AERLEDYSILALAALVALKR---EMNLNI 67
I+ +V E +KEL E++K +++ E+L+ +V ++R E I
Sbjct: 223 IRGELEKVRENVKEL---ESIKGKISELKIQVEKLKGRKKGLEEKIVQIERSIEEKKAKI 279
Query: 68 EDLAERIYNVSS---------KLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTN 118
+L E + ++ KL F+ E E+ L+R+E+E+S + ++ ++ V+
Sbjct: 280 SELEEIVKDIPKLQEKEKEYRKLKGFRDEYESKLRRLEKELSKWESELKAIEE---VIKE 336
Query: 119 VEKVLPRISELEERMFSFPLEIAESLEKRLIKSLEKRVEELVE--------EKVKNSNNG 170
EK R E+ E++ +EKRL + L+ VEEL + E++K G
Sbjct: 337 GEKKKERAEEIREKL--------SEIEKRL-EELKPYVEELEDAKQVQKQIERLKARLKG 387
Query: 171 ISPEVIREFIDKYDSLVRENVELRRRLES--------------REKIIKDLREKLAKM-- 214
+SP E I+K +SL +E E+ ++ R K I++LR+ K
Sbjct: 388 LSPG---EVIEKLESLEKERTEIEEAIKEITTRIGQMEQEKNERMKAIEELRKAKGKCPV 444
Query: 215 ------QESVKEM------------EEIEKKVNEYGKIADEIKEVRVKLAKLTGSYDVRE 256
+E KE+ EE+++ E K+ ++++ +KL + + D+ E
Sbjct: 445 CGRELTEEHKKELMERYTLEIKKIEEELKRTTEEERKLRVNLRKLEIKLREFSVMRDIAE 504
Query: 257 ALRIIEKNF--IPKSKVEDLAKKLKALMEENEKLREENEKLKKDLERI--TQAVKMLMEE 312
++ +E ++E ++ + L EE KL+ E L++DL+RI + + L+EE
Sbjct: 505 QIKELESKLKGFNLEELEQKEREFEGLNEEFNKLKGELLGLERDLKRIKALEGRRKLIEE 564
Query: 313 GLIEAQEE 320
+ +A+EE
Sbjct: 565 KVRKAKEE 572
Score = 70.6 bits (170), Expect = 2e-11
Identities = 82/328 (25%), Positives = 157/328 (47%), Gaps = 55/328 (16%)
Query: 32 WENVKNALADAERLEDYSILALAALVALKREMNLNIEDLAER---IYNVSSKLDSFKTET 88
+EN+K + L + +A ++ + N ++L ++ I +SSKL + E
Sbjct: 168 YENLKRIKTNINLLIESKKSFIARTENIEELIKANEDELTKKLSEINEISSKLPPIRGEL 227
Query: 89 ENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRISELEERMFSFPLEIAESLEKRL 148
E + + +E+ SIK I EL VEK+ R LEE++ ++I S+E++
Sbjct: 228 EKVRENV-KELESIKGKISELK------IQVEKLKGRKKGLEEKI----VQIERSIEEKK 276
Query: 149 IKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLVR----ENVELRRRLESREKII 204
K E +EE+V++ K ++ F D+Y+S +R E + L++ E++I
Sbjct: 277 AKISE--LEEIVKDIPKLQEKEKEYRKLKGFRDEYESKLRRLEKELSKWESELKAIEEVI 334
Query: 205 KDLREKLAKMQESVKEMEEIEKKVNE---YGKIADEIKEVRVKLAKLTGSY------DVR 255
K+ +K + +E +++ EIEK++ E Y + ++ K+V+ ++ +L +V
Sbjct: 335 KEGEKKKERAEEIREKLSEIEKRLEELKPYVEELEDAKQVQKQIERLKARLKGLSPGEVI 394
Query: 256 EALRIIEKNFIPKSKVEDLAKKLKALM-----EENEKL-----------------REENE 293
E L +EK ++++E+ K++ + E+NE++ RE E
Sbjct: 395 EKLESLEKE---RTEIEEAIKEITTRIGQMEQEKNERMKAIEELRKAKGKCPVCGRELTE 451
Query: 294 KLKKDL-ERITQAVKMLMEEGLIEAQEE 320
+ KK+L ER T +K + EE +EE
Sbjct: 452 EHKKELMERYTLEIKKIEEELKRTTEEE 479
>gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae]
Length = 1015
Score = 75.3 bits (182), Expect = 8e-13
Identities = 77/325 (23%), Positives = 155/325 (47%), Gaps = 42/325 (12%)
Query: 24 EGLKELREWENVKNALADAER----------LEDYS--ILALA-ALVALKREMNLN---I 67
E L++L+ +KN + ER ++YS I L L+ L+ E L I
Sbjct: 568 EQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEI 627
Query: 68 EDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRIS 127
++ + VS D E +N +K ++ EI S KD I D + + + K +
Sbjct: 628 DNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDSK--RDLE 685
Query: 128 ELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLV 187
L+E+ L A+ + ++ + L+K EE +EK + + + + I+ ++ +
Sbjct: 686 SLKEQ-----LRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETEL 740
Query: 188 RENVELRRRLE--------SREKIIKDLREK----LAKMQESVKEMEEIEKKVNEYGKIA 235
+ ++E R+ + S E+ IK+L+ + ++++ ES K++EE++ K+ K +
Sbjct: 741 KSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSS 800
Query: 236 DEIKEVRVKLAKLTGSYDVREALRI-IEKNFIPKSKVEDLAKKLKALMEENEKLREENEK 294
E++ V+ +L + +E +R+ E+N + KSK+ED+ ++LK E + +EE E
Sbjct: 801 SELETVKQELN------NAQEKIRVNAEENTVLKSKLEDIERELKDKQAEIKSNQEEKEL 854
Query: 295 LKKDLERITQAVKMLMEEGLIEAQE 319
L L+ + Q + ++ +E
Sbjct: 855 LTSRLKELEQELDSTQQKAQKSEEE 879
>gi|6320145 Integrin analogue gene; Uso1p [Saccharomyces cerevisiae]
>gi|2133190|pir||S67593 transport protein USO1 - yeast
(Saccharomyces cerevisiae) >gi|1431059|emb|CAA98621.1|
(Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 75.3 bits (182), Expect = 8e-13
Identities = 78/325 (24%), Positives = 154/325 (47%), Gaps = 42/325 (12%)
Query: 24 EGLKELREWENVKNALADAER----------LEDYS--ILALA-ALVALKREMNLN---I 67
E L++L+ +KN + ER ++YS I L L+ L+ E L I
Sbjct: 1349 EQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEI 1408
Query: 68 EDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRIS 127
++ + VS D E +N +K ++ EI S KD I D + + + K +
Sbjct: 1409 DNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNK--RDLE 1466
Query: 128 ELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLV 187
L+E+ L A+ + ++ + L+K EE +EK + + + + I+ ++ +
Sbjct: 1467 SLKEQ-----LRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETEL 1521
Query: 188 RENVELRRRLE--------SREKIIKDLREK----LAKMQESVKEMEEIEKKVNEYGKIA 235
+ ++E R+ + S E+ IK+L+ + ++++ ES K++EE++ K+ K
Sbjct: 1522 KSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSG 1581
Query: 236 DEIKEVRVKLAKLTGSYDVREALRI-IEKNFIPKSKVEDLAKKLKALMEENEKLREENEK 294
E++ V+ +L + +E +RI E+N + KSK+ED+ ++LK E + +EE E
Sbjct: 1582 SELETVKQELN------NAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKEL 1635
Query: 295 LKKDLERITQAVKMLMEEGLIEAQE 319
L L+ + Q + ++ +E
Sbjct: 1636 LTSRLKELEQELDSTQQKAQKSEEE 1660
>pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae)
Length = 1726
Score = 75.3 bits (182), Expect = 8e-13
Identities = 77/325 (23%), Positives = 155/325 (47%), Gaps = 42/325 (12%)
Query: 24 EGLKELREWENVKNALADAER----------LEDYS--ILALA-ALVALKREMNLN---I 67
E L++L+ +KN + ER ++YS I L L+ L+ E L I
Sbjct: 1279 EQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEI 1338
Query: 68 EDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRIS 127
++ + VS D E +N +K ++ EI S KD I D + + + K +
Sbjct: 1339 DNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDSK--RDLE 1396
Query: 128 ELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLV 187
L+E+ L A+ + ++ + L+K EE +EK + + + + I+ ++ +
Sbjct: 1397 SLKEQ-----LRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETEL 1451
Query: 188 RENVELRRRLE--------SREKIIKDLREK----LAKMQESVKEMEEIEKKVNEYGKIA 235
+ ++E R+ + S E+ IK+L+ + ++++ ES K++EE++ K+ K +
Sbjct: 1452 KSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSS 1511
Query: 236 DEIKEVRVKLAKLTGSYDVREALRI-IEKNFIPKSKVEDLAKKLKALMEENEKLREENEK 294
E++ V+ +L + +E +R+ E+N + KSK+ED+ ++LK E + +EE E
Sbjct: 1512 SELETVKQELN------NAQEKIRVNAEENTVLKSKLEDIERELKDKQAEIKSNQEEKEL 1565
Query: 295 LKKDLERITQAVKMLMEEGLIEAQE 319
L L+ + Q + ++ +E
Sbjct: 1566 LTSRLKELEQELDSTQQKAQKSEEE 1590
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 75.3 bits (182), Expect = 8e-13
Identities = 78/325 (24%), Positives = 154/325 (47%), Gaps = 42/325 (12%)
Query: 24 EGLKELREWENVKNALADAER----------LEDYS--ILALA-ALVALKREMNLN---I 67
E L++L+ +KN + ER ++YS I L L+ L+ E L I
Sbjct: 827 EQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEI 886
Query: 68 EDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRIS 127
++ + VS D E +N +K ++ EI S KD I D + + + K +
Sbjct: 887 DNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNK--RDLE 944
Query: 128 ELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLV 187
L+E+ L A+ + ++ + L+K EE +EK + + + + I+ ++ +
Sbjct: 945 SLKEQ-----LRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETEL 999
Query: 188 RENVELRRRLE--------SREKIIKDLREK----LAKMQESVKEMEEIEKKVNEYGKIA 235
+ ++E R+ + S E+ IK+L+ + ++++ ES K++EE++ K+ K
Sbjct: 1000 KSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSG 1059
Query: 236 DEIKEVRVKLAKLTGSYDVREALRI-IEKNFIPKSKVEDLAKKLKALMEENEKLREENEK 294
E++ V+ +L + +E +RI E+N + KSK+ED+ ++LK E + +EE E
Sbjct: 1060 SELETVKQELN------NAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKEL 1113
Query: 295 LKKDLERITQAVKMLMEEGLIEAQE 319
L L+ + Q + ++ +E
Sbjct: 1114 LTSRLKELEQELDSTQQKAQKSEEE 1138
>sp|P25386|USO1_YEAST INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1 >gi|4778|emb|CAA38253.1|
(X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 75.3 bits (182), Expect = 8e-13
Identities = 78/325 (24%), Positives = 154/325 (47%), Gaps = 42/325 (12%)
Query: 24 EGLKELREWENVKNALADAER----------LEDYS--ILALA-ALVALKREMNLN---I 67
E L++L+ +KN + ER ++YS I L L+ L+ E L I
Sbjct: 1349 EQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEI 1408
Query: 68 EDLAERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRIS 127
++ + VS D E +N +K ++ EI S KD I D + + + K +
Sbjct: 1409 DNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNK--RDLE 1466
Query: 128 ELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLV 187
L+E+ L A+ + ++ + L+K EE +EK + + + + I+ ++ +
Sbjct: 1467 SLKEQ-----LRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETEL 1521
Query: 188 RENVELRRRLE--------SREKIIKDLREK----LAKMQESVKEMEEIEKKVNEYGKIA 235
+ ++E R+ + S E+ IK+L+ + ++++ ES K++EE++ K+ K
Sbjct: 1522 KSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSG 1581
Query: 236 DEIKEVRVKLAKLTGSYDVREALRI-IEKNFIPKSKVEDLAKKLKALMEENEKLREENEK 294
E++ V+ +L + +E +RI E+N + KSK+ED+ ++LK E + +EE E
Sbjct: 1582 SELETVKQELN------NAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKEL 1635
Query: 295 LKKDLERITQAVKMLMEEGLIEAQE 319
L L+ + Q + ++ +E
Sbjct: 1636 LTSRLKELEQELDSTQQKAQKSEEE 1660
>gi|11498637 purine NTPase, putative [Archaeoglobus fulgidus]
>gi|7451889|pir||H69378 purine NTPase homolog -
Archaeoglobus fulgidus >gi|2649562|gb|AAB90211.1|
(AE001032) purine NTPase, putative [Archaeoglobus
fulgidus]
Length = 886
Score = 73.4 bits (177), Expect = 3e-12
Identities = 72/309 (23%), Positives = 137/309 (44%), Gaps = 42/309 (13%)
Query: 29 LREWENVKNALADAERLEDYSILALAALVALKREMNLNIEDLAERIYNVSSKLDSFKTET 88
+R+ E+ + + R+EDY A L A+ R + E L E + + ++ K E
Sbjct: 135 IRDDESRERIIRQITRIEDYEN-AWKNLGAVIRMLEREKERLKEFL-SQEEQIKRQKEEK 192
Query: 89 ENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRISELEERMFSF------PLEIAE 142
+ ++RI EI SI+ E+L V N+E L + E + R+ S L+
Sbjct: 193 KAEIERISEEIKSIESLREKLSEE---VRNLESRLKELEEHKSRLESLRKQESSVLQEVR 249
Query: 143 SLEKRL-------------IKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLVRE 189
LE++L I+ LEK+ +E+ E K K I +++ E + +
Sbjct: 250 GLEEKLRELEKQLKEVVERIEDLEKKAKEVKELKPKAERYSILEKLLSEINQALRDVEKR 309
Query: 190 NVELRRRLESREKIIKDLREKLAKMQESVKEMEEIEKKVNEYGKIADEIKEVRVKLAKLT 249
+L R + +K E +K++E K +EE+E+++ + K ++ ++ K+ ++
Sbjct: 310 EGDLTREAAGIQAQLKKAEEDNSKLEEITKRIEELERELERFEKSHRLLETLKPKMDRMQ 369
Query: 250 GSYDVREALRIIEKNFIP-------------KSKVEDLAKKLKALMEENEKLREENEKLK 296
G ++ EKN P K + +++ +KLK L+ + L+ +LK
Sbjct: 370 GI-----KAKLEEKNLTPDKVEKMYDLLSKAKEEEKEITEKLKKLIAKKSSLKTRGAQLK 424
Query: 297 KDLERITQA 305
K +E + A
Sbjct: 425 KAVEELKSA 433
>pir||F71190 probable chromosome assembly protein - Pyrococcus horikoshii
>gi|3258234|dbj|BAA30917.1| (AP000007) 1179aa long
hypothetical chromosome assembly protein [Pyrococcus
horikoshii]
Length = 1179
Score = 73.4 bits (177), Expect = 3e-12
Identities = 77/308 (25%), Positives = 157/308 (50%), Gaps = 38/308 (12%)
Query: 21 EVVEGLKELRE-WENVKNAL-ADAERLEDYSILALAALVALKREMNLNIEDLAERIYNVS 78
E VE L+ ++E E N+L + LE+ S + +++E++L +DL E++
Sbjct: 668 EKVENLRIMKESLEGEVNSLRVKLKALENQSFELRIRMSDVEKEISLISKDL-EKLIKEE 726
Query: 79 SKLDSFKTETENNLKRIEREISSIKDAIEELDRRTVVVTNVEKVLPRISELEERMFSFPL 138
L S ++E + I+ IS KD + +L R +E++ R +L++ + +
Sbjct: 727 ESLRSEIEDSERKIAEIDETISKKKDEVAKLKGR------IERLEKRRDKLKKALEN--P 778
Query: 139 EIAESLEKRLIKSLEKRVEELVEE------KVKNSNNGISPEVI---REFIDKYDSLVRE 189
E E EK I+ +E+ + +L EE K+++ N+ ++ E+I ++ + LV +
Sbjct: 779 EAREVTEK--IREVEREIAKLREELSRVEGKLESLNSRLNDELIPRKASLEEEIEGLVNK 836
Query: 190 NVELRRRLESREKIIKDLREKLAKM-----------QESVKEMEEIEKKV----NEYGKI 234
L+ + E+ +K L EKL K+ +E K+ EE+E+KV E KI
Sbjct: 837 INALKANINENEEALKSLTEKLEKLKKEEGEIYSRIEEQKKKKEELERKVAELREEKEKI 896
Query: 235 ADEIKEVRVKLAKLTGSYDVREALRIIEKNFIPKSKVEDLAKKLKALMEENEKLREENEK 294
+ I+E+R+++ L ++L ++EKN K +++ K ++ + + E L++E EK
Sbjct: 897 SRRIQELRIEVNTLKVRNSQLKSL-LMEKNSQLKHFSKEVIKSIRDIPSDLEGLKKEIEK 955
Query: 295 LKKDLERI 302
++++++ +
Sbjct: 956 MEEEIKAL 963
>pir||A72287 hypothetical protein TM1182 - Thermotoga maritima (strain MSB8)
>gi|4981731|gb|AAD36257.1|AE001774_14 (AE001774)
chromosome segregation SMC protein, putative [Thermotoga
maritima]
Length = 1170
Score = 73.0 bits (176), Expect = 4e-12
Identities = 78/342 (22%), Positives = 155/342 (44%), Gaps = 38/342 (11%)
Query: 7 EERVNWAFIQEHYPEVVEGLKELR--------EWENVKNALADAER-LEDYSILALAALV 57
E R+ +++ E + E R E EN+KN A +R L + S + +
Sbjct: 666 ERRIKLKHLEQEMEETERQIAEKRDELASLKTEQENLKNQEALVQRELFELSRKSSSTKT 725
Query: 58 ALKREMNLNIEDLAERIYNVSSKLDSFKTETENNLKRIER---EISSIKDAIEELDRR-T 113
L E+ +I L E + N+ L ++ + E R E+ EI +K E L R T
Sbjct: 726 VLS-EILRSINQLQEEVENLEKLLVEYRAKEEGLNARREKIFEEIDELKQNRENLQRSLT 784
Query: 114 VVVTNVEKVLPRISELEERMFSFPLEIAESLEKRLIKSLEKRVEELVEEKVKNSNNGISP 173
+EK + EL E++F+ E+ LE + E R + E++ I
Sbjct: 785 EYSEELEKEKKILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIARETEDIKL 844
Query: 174 EV--IREFIDKYDSLVRENV-ELRRRLESREKIIKDLREKLAKMQESVKEMEEIEKKVNE 230
++ + E ++ Y +RE+ E+ + + + + ++ + +E ++E++E+E +++E
Sbjct: 845 QMTSLEEEMENYRKFIREHEREIEHLKKEMDSVFEAMKLHRSGKEEKMRELQEVENRMDE 904
Query: 231 YGKIADEIK-----------EVRVKLAKLTGSYDVREA-LRIIEKNFIPK--SKVEDLAK 276
+ + ++ E R+K+A L + E + +++ + + +++DL
Sbjct: 905 LKEEKERLRNHLHQIDLALQETRLKIANLLEEFSGNEEDVEELDEEKLEEIYRQIKDLEN 964
Query: 277 KLKAL-------MEENEKLREENEKLKKDLERITQAVKMLME 311
K+K L ++E EKLREE E++ K E + +A + L E
Sbjct: 965 KIKYLGPVDLTAIDEYEKLREEYEEILKQKEDLEEAKRKLEE 1006
>pir||B70356 chromosome assembly protein homolog - Aquifex aeolicus
>gi|2983243|gb|AAC06839.1| (AE000699) chromosome assembly
protein homolog [Aquifex aeolicus]
Length = 1156
Score = 71.4 bits (172), Expect = 1e-11
Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 40/282 (14%)
Query: 62 EMNLNIED----LAERIYNVSSKLDSFKTETENNLKR----------------IEREISS 101
E LN+ED LAE I KL++ K + E ++KR + +++S
Sbjct: 738 EKLLNVEDKLKELAEEIEYYEEKLNNLKLK-EGDIKRHYSREGVEEKRREYSKVRKQVSE 796
Query: 102 IKDAIEELDRRTVVVTNVEKVLPRISELEERMFSFPLEIAESLEKR---LIKSLEKRVEE 158
I+ ++ E++R T + L + + +ER + E +SL+K LI EK ++E
Sbjct: 797 IEKSLNEIERELNKKTYELEYLEKEIQEKEREREYLTERIKSLKKEIENLILFKEKTLQE 856
Query: 159 LVEEKVKNSNNGISPEVIREFI----DKYDSLVRENVELRRRLESREKIIKDLREKLAKM 214
+ E +VK + E + + I K L + EL+ ++ +EK +K L EK+ +
Sbjct: 857 VKEAEVKVYDYIKQKEELEKEILNLKSKLGKLKIKEEELKEKIFEKEKNLKVLEEKIENL 916
Query: 215 QESVKEMEEIEKKVNEYG--KIADEIKEVRVKLAKL-----TGSYDVREALRIIEKNFIP 267
E +KE E+++ +E K+ +++K V ++ KL D E L+
Sbjct: 917 NEELKEYEDLKLGADEESIPKLKEKLKRVTEEIQKLGSVNFRAEEDYAEELKRFNDYKEK 976
Query: 268 KSKVEDLAKKLKALMEENEKLREENEKLKKDLERITQAVKML 309
+ K+++ +K +K L+EE EN+K K LE Q K L
Sbjct: 977 QQKLKEESKAIKKLIEET-----ENKKRKVFLEAFNQINKSL 1013
>pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|1850913|gb|AAB48065.1|
(L03534) myosin heavy chain [Entamoeba histolytica]
Length = 2139
Score = 70.6 bits (170), Expect = 2e-11
Identities = 75/315 (23%), Positives = 148/315 (46%), Gaps = 39/315 (12%)
Query: 24 EGLKELREWENVKNALADAERLEDYSILALAALVALKREMNLNIEDLAERIYNVSSKLDS 83
EG K+ +E E++K LA+ + + + ALA+ A E+ I+DL ++I + SKL +
Sbjct: 862 EGKKKDKEIEDLKKKLAEEIKKREAAENALASATAKTGELEAKIQDLEDKISELESKLSA 921
Query: 84 F---KTETENNLKRIEREISSIKDAIEEL-----------DRRTVVVTNVEKVLPRISEL 129
K E ++ +E + +K+ I+ L + V +T + + ++
Sbjct: 922 AELDKQELNLKIENLEEDKEELKETIDNLKGDLKDSKLKGEDLEVEITELNSQINTLNAT 981
Query: 130 EERMFSFPLEIAESLEKRL---------IKSLEKRVEELVEEK--VKNSNNGISPEVIRE 178
++ E+ ES++++ IK LE+ ++L +++ V + + I+ ++ +
Sbjct: 982 VDKKDKTIAEMQESIDEKEDEITKLKGDIKLLEEEKDDLEQDRADVSATKDDIAKKLNKI 1041
Query: 179 FIDKYDSLVRENVELRRRLESREKIIKDLREKLAKMQESVKEMEE-IEKKVNEYGKIADE 237
I+ D+ E +L + LE E KDL +L + Q + E E+ + +V K +DE
Sbjct: 1042 TIECEDA-KDEIAKLEQELEDEENKNKDLTNELQQTQLKLGETEKSLAAQVAATKKASDE 1100
Query: 238 IKEVRVKLAKLTGSYDVREALRIIEKNFIPKSKVEDLAKKLKALMEENEKLREENEKLKK 297
+ L E ++ KN + K+K DL KK+ L ++ E L ++ K++
Sbjct: 1101 RDTLSQNL----------ENEKLTTKN-LTKTKA-DLEKKISGLKQDYEDLEDDKNKIEG 1148
Query: 298 DLERITQAVKMLMEE 312
DL + +K L +E
Sbjct: 1149 DLRNAQRKIKELDDE 1163
>pir||E70318 hypothetical protein aq_197 - Aquifex aeolicus
>gi|2982915|gb|AAC06533.1| (AE000677) putative protein
[Aquifex aeolicus]
Length = 400
Score = 69.1 bits (166), Expect = 6e-11
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 146 KRLIKSLEKRVEELVEEKVKNSNNGISPEVIREFIDKYDSLVRENVELRRR--------- 196
+R ++ ++K E L+EE KN E RE + K SL++ +E + R
Sbjct: 108 ERELERIQKEKEALLEELEKNEEVRQKVEEERERLKKEISLIKLQIEQKERELERAKEAQ 167
Query: 197 -----LESREKIIKDLREKLAKMQESVKEMEEIEKKVNEYG-KIADEIKEVRVKLAKLTG 250
+E +EK + L+EKL ++++++K+ +E E+K+ E K+ ++ + K K G
Sbjct: 168 EKLEEVEKKEKEVNKLKEKLRELEKNLKKQKEKEEKLLESNRKLFQLLELLGRKEDKRRG 227
Query: 251 SYDVREALRIIEKNFIPKSKVEDLAKKLKALMEENEKLREENEKLKKDLERITQAVKMLM 310
S +VRE LR K + +V +L L+ ENE+L++E EKLK +LE + + L+
Sbjct: 228 SKEVRE-LRKERKKLV--KEVLELQDLLEIYSRENEELKKELEKLKSELEGAKKEIAKLL 284
Query: 311 EE 312
E
Sbjct: 285 TE 286
>pir||E71169 hypothetical protein PH0553 - Pyrococcus horikoshii
>gi|3256959|dbj|BAA29642.1| (AP000002) 399aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 399
Score = 69.1 bits (166), Expect = 6e-11
Identities = 61/237 (25%), Positives = 120/237 (49%), Gaps = 45/237 (18%)
Query: 102 IKDAIEELDRRTVVVTNVEKVLPRISE-LEERMFSFPLEIAESLEKRLIKSLEK--RVEE 158
I ++EL ++ + + L R+ E LEE+ F+ + AES+ ++ + EK R+EE
Sbjct: 67 ISKRVDELGKK---LGELSSQLSRLVEALEEKKFAVHEKKAESIAEKAAEVTEKVERIEE 123
Query: 159 LVEEKVKNSNNGISPEVIREFIDKYDSLVRENVELRRRLESREKIIKDLREKLA--KMQE 216
L+EEK K E EL +++E K +++L EKL K++E
Sbjct: 124 LLEEKPKE----------------------EKSELAKKVEEIHKKVEELEEKLTGEKLEE 161
Query: 217 SVKEMEEIEKKVN--------EYGKIADEIKEVRVKLAKLTGSYDVR-----EALRIIEK 263
+ K++EE+E+K+ E G++A++++E+ + AK V E + ++E+
Sbjct: 162 TKKKVEELEEKIEKGEEVTAEEVGELAEKVEELEAEAAKPEEEVVVEVPEEEEKVEVVEE 221
Query: 264 NFIPKSKVEDLAKKLKALMEENEKLREENEKLKKDLERITQAVKMLMEEGLIEAQEE 320
P+ E++ ++EE +K E EK K+++ ++++ +K+ + I +EE
Sbjct: 222 EVPPEE--EEVVTPEVEVVEEEKKEEVEEEKEKEEVGKMSEKMKIPEDIASILFEEE 276
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.311 0.131 0.332
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101871948
Number of Sequences: 2977
Number of extensions: 4165938
Number of successful extensions: 50132
Number of sequences better than 1.0e-10: 15
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 49751
Number of HSP's gapped (non-prelim): 114
length of query: 320
length of database: 189,106,746
effective HSP length: 67
effective length of query: 253
effective length of database: 149,008,117
effective search space: 37699053601
effective search space used: 37699053601
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 165 (68.7 bits)