BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0994 1461757 1462293 179 !not a gene!
         (179 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71059 hypothetical protein PH1168 - Pyrococcus horikoshii ...    88  6e-17

>pir||B71059 hypothetical protein PH1168 - Pyrococcus horikoshii
           >gi|3257585|dbj|BAA30268.1| (AP000005) 118aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 118
           
 Score = 88.2 bits (215), Expect = 6e-17
 Identities = 51/111 (45%), Positives = 67/111 (59%)

Query: 1   MMTYKSFNLLVFTILTVKLTDSPGPITFGSKLETLRPGTLNVTLRISTVSLKGFKMVYMS 60
           ++ YK F+L+VF  +TVKLT   G I+ GSK   L PGTL +T  IST S KGF++VY+S
Sbjct: 4   LIMYKLFSLVVFVRVTVKLTTPLGGISRGSKSTILSPGTLKLTFTISTASSKGFEIVYIS 63

Query: 61  LGTEGSGPIKAPIWESILSPLSSAGFIISNSILPRGTFLRELPCQTSRYAL 111
           LGT    P KA  +  I++  SS    + NSI+P G F   L  Q + Y L
Sbjct: 64  LGTNELEPTKASTYAGIVNVFSSEASKMLNSIIPIGIFFVMLFLQITTYVL 114


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.139    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61261887
Number of Sequences: 2977
Number of extensions: 2267041
Number of successful extensions: 4265
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4264
Number of HSP's gapped (non-prelim): 1
length of query: 179
length of database: 189,106,746
effective HSP length: 54
effective length of query: 125
effective length of database: 156,788,448
effective search space: 19598556000
effective search space used: 19598556000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 162 (67.5 bits)