BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0997 (PAB0997) DE:Hypothetical protein
(217 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75064 hypothetical protein PAB0997 - Pyrococcus abyssi (st... 427 e-119
emb|CAC11861.1| (AL445065) conserved hypothetical protein [Therm... 106 3e-22
pir||B69206 conserved hypothetical protein MTH796 - Methanobacte... 93 3e-18
sp|Q58193|Y783_METJA HYPOTHETICAL PROTEIN MJ0783 >gi|2128501|pir... 91 8e-18
gb|AAK43170.1| Conserved hypothetical protein [Sulfolobus solfat... 84 1e-15
pir||S75497 hypothetical protein slr2121 - Synechocystis sp. (st... 78 1e-13
dbj|BAB04097.1| (AP001508) unknown conserved protein in others [... 76 2e-13
>pir||D75064 hypothetical protein PAB0997 - Pyrococcus abyssi (strain Orsay)
>gi|5458922|emb|CAB50409.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 217
Score = 427 bits (1085), Expect = e-119
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MCYIKFTSALSKGKITATKEIDKSQIIVRLSMIVDLSVELSEETRVYPGDPRVEIIPWAR 60
MCYIKFTSALSKGKITATKEIDKSQIIVRLSMIVDLSVELSEETRVYPGDPRVEIIPWAR
Sbjct: 1 MCYIKFTSALSKGKITATKEIDKSQIIVRLSMIVDLSVELSEETRVYPGDPRVEIIPWAR 60
Query: 61 EEFYMNLLKLGEHSGTHVDAPIHFIPNGKAINELPLEKFIGEGIVIDAREKIEIPQEVEG 120
EEFYMNLLKLGEHSGTHVDAPIHFIPNGKAINELPLEKFIGEGIVIDAREKIEIPQEVEG
Sbjct: 61 EEFYMNLLKLGEHSGTHVDAPIHFIPNGKAINELPLEKFIGEGIVIDAREKIEIPQEVEG 120
Query: 121 KIVLLLTGGKEITIEIAKELVDRNVKAVGIDGMSIGNEEVHKVLLSAEIPIYENLVNLEK 180
KIVLLLTGGKEITIEIAKELVDRNVKAVGIDGMSIGNEEVHKVLLSAEIPIYENLVNLEK
Sbjct: 121 KIVLLLTGGKEITIEIAKELVDRNVKAVGIDGMSIGNEEVHKVLLSAEIPIYENLVNLEK 180
Query: 181 LIGRRFLFVGLPLKIRKGSGSPVRAVAIIMDGAPAGI 217
LIGRRFLFVGLPLKIRKGSGSPVRAVAIIMDGAPAGI
Sbjct: 181 LIGRRFLFVGLPLKIRKGSGSPVRAVAIIMDGAPAGI 217
>emb|CAC11861.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 220
Score = 106 bits (261), Expect = 3e-22
Identities = 76/219 (34%), Positives = 115/219 (51%), Gaps = 33/219 (15%)
Query: 26 IIVRLSMIVDLSVELSEETRVYPGDPRVEIIPW---AREEFYMNLLKLGEHSGTHVDAPI 82
I++ + I DL+V L ++P +P +EI P AR+ + + + HSGTH+DAP
Sbjct: 2 IMIHIKAIHDLTVPLETYMPIWPTNPLLEIKPVGTVARDGYKIETISGSTHSGTHIDAPA 61
Query: 83 HFIPNGKAINELPLEKFIGEGIVID---------AREKIE-IPQEVEGKIVLLLTGGKE- 131
H + NG I+++ +FIG G I + IE +E +G I+L+ TG +
Sbjct: 62 HMLENGITIDQIDPIRFIGTGYCIKTIPDGNFVRSTHLIEKWKEEYDGSIILIETGWYKK 121
Query: 132 -------------ITIEIAKELVDRNVKAVGIDGMSI-----GNEEVHKVLLSAEIPIYE 173
+T + A+ L++RNVK VGID + I + VHK LLS IP E
Sbjct: 122 RGFTREFQYEFPGLTEDAAEFLIERNVKLVGIDTLGIEPYQDSDFHVHKKLLSKGIPFIE 181
Query: 174 NLVNLEKL-IGRRFLFVGLPLKIRKGSGSPVRAVAIIMD 211
+L L+ L G+ +L V LPLK++ SGS R +A+ MD
Sbjct: 182 DLYGLDDLEEGKPYLVVALPLKMKGASGSMARVMALEMD 220
>pir||B69206 conserved hypothetical protein MTH796 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621886|gb|AAB85296.1| (AE000858) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 204
Score = 92.8 bits (227), Expect = 3e-18
Identities = 65/198 (32%), Positives = 105/198 (52%), Gaps = 24/198 (12%)
Query: 33 IVDLSVELSEETRVYPGDPRVEI-IPWAREEFYMNLLKLGEHSGTHVDAPIHFIPNGKAI 91
I+DL+ ++ + V+PGDP V++ I + ++ + L LG H+GTH+DAP+H + +
Sbjct: 3 IIDLTHKIEDSMPVFPGDPPVKLRIESSDADYITSSLSLGMHTGTHIDAPLHAHCSALTV 62
Query: 92 NELPLEKFIGEGIVIDAREKIEIPQEVEGKIVLLLTG-----GKE--------ITIEIAK 138
+ + LE+ GEG ++ E + G I ++ TG G E I +A+
Sbjct: 63 DGIGLEELTGEGFLVSGGEILN-----GGDIAVIRTGWSSRWGSEGYFRDYPGIKRRLAE 117
Query: 139 ELVDRNVKAVGIDGMSI---GNEEVHKVLLSAEIPIYENLVNLEKLIGRRFLFVGLPLKI 195
ELV+ V V +DG S+ G ++HK+LL I I EN+ N + L + LFV +PL +
Sbjct: 118 ELVEHEVLGVCVDGPSVDRPGETDIHKLLLKNGIWIVENITNTDLLPPKFRLFV-VPLSV 176
Query: 196 RKGSGSPVRAVAIIMDGA 213
R SP R A+ G+
Sbjct: 177 R-AEASPARVFAVTGSGS 193
>sp|Q58193|Y783_METJA HYPOTHETICAL PROTEIN MJ0783 >gi|2128501|pir||G64397 hypothetical
protein MJ0783 - Methanococcus jannaschii
>gi|1591483|gb|AAB98780.1| (U67523) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 186
Score = 91.3 bits (223), Expect = 8e-18
Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 23/179 (12%)
Query: 47 YPGDPRVEIIPWAREEFYMNLLKLGEHSGTHVDAPIHFIPNGKAINELPLEKFIGEG--- 103
YPGDP + II + F ++ + +G H TH+D P H N +P + I +G
Sbjct: 15 YPGDPELRIIEKKIDGFIVSEIIMGSHLCTHIDYPKHV----GLENRIPFKDGIIKGKGY 70
Query: 104 -IVIDAREKIEIPQEVEGKIVLLLTGGKEI-----------TIEIAKELVDRNVKAVGID 151
I +D E+ ++P I+L+ TG + I +++ N+K VGID
Sbjct: 71 CISLDDFERNKLPA---CDILLIYTGFSKYWGRDEYFEKIPEIPFLDDIIKSNIKCVGID 127
Query: 152 GMSIGNEEVHKVLLSAEIPIYENL-VNLEKLIGRRFLFVGLPLKIRKGSGSPVRAVAII 209
+IG E HK LLS I I ENL NL+ L+G+ F F+GLPLKI SP+R +AI+
Sbjct: 128 ACTIGGFEEHKRLLSNNILIIENLNENLKNLVGKSFYFLGLPLKIFDIDASPIRCIAIL 186
>gb|AAK43170.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 243
Score = 83.9 bits (204), Expect = 1e-15
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 48/225 (21%)
Query: 32 MIVDLSVELSEETRVYPGDPRVEIIPWAREEFY----MNLLKLGEHSGTHVDAPIHFIPN 87
+++D++ ++ + Y GDP + + + Y ++ + +G HSGTH+D P+HF+PN
Sbjct: 15 LLIDMTYDMFNGMQTYIGDPPFKHEYFRKGNKYGEVTLSTVYMGLHSGTHIDLPLHFVPN 74
Query: 88 GKAINELPLEKFIGEGIVID-AREKIEIP-----------QEVEGKIVLLLTG-----GK 130
G+++ + + +FIG G V+D + +K+ P + E +V+L TG GK
Sbjct: 75 GESVEKFNIIQFIGYGNVLDLSYKKLGEPISSNDLKKFDDRIKENYVVMLYTGFSATRGK 134
Query: 131 E--------ITIEIAKELVDRNVKAVGIDGMSI----GNE-----------EVHKVLLSA 167
E + A LV + ++AVGI+ MSI G E VH LLS
Sbjct: 135 EDFLYNWPYLDSNGADYLVSKKIRAVGIESMSIAGWAGKEYPPRTNWDEVVYVHHKLLSN 194
Query: 168 EIPIYENLVNLEKLI----GRRFLFVGLPLKIRKGSGSPVRAVAI 208
+I I E++ N++K++ LF PLKI G P R AI
Sbjct: 195 DIIILESVNNMKKVLEECKNGEALFFYAPLKIVGAEGGPTRLFAI 239
>pir||S75497 hypothetical protein slr2121 - Synechocystis sp. (strain PCC 6803)
>gi|1653142|dbj|BAA18058.1| (D90911) hypothetical
protein [Synechocystis sp.]
Length = 215
Score = 77.6 bits (188), Expect = 1e-13
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 32/205 (15%)
Query: 33 IVDLSVELSEETRVYPGDPRVEIIP---WAREEFYMNL-LKLGEHSGTHVDAPIHFIPNG 88
++D+SV + + +PG P +E P A + + + + H+GTHVDAP HF+ G
Sbjct: 6 LIDISVAVHPQLPRWPGSPAIEFQPELDLANGDIATDTTIHMSVHTGTHVDAPSHFLQGG 65
Query: 89 KAINELPLEKFIGEGIVIDAR--EKIEIPQEVEGKI------VLLLTGGK---------- 130
K + LPLE +G VID + IE + I +L+ T
Sbjct: 66 KTVETLPLETLLGPVTVIDLSHVDAIEPHHLAQAPIPDRTQRLLIRTRNSLHWQQNQSEF 125
Query: 131 -----EITIEIAKELVDRNVKAVGIDGMSI----GNEEVHKVLLSAEIPIYENLVNLEKL 181
+T + A+ +V++ +K +GID +S+ + H++LL AE+ I E L NL +
Sbjct: 126 DPNFVALTAQAAQWVVEQGIKLIGIDYLSVQRFRDDATTHQILLGAEVIIIEEL-NLYAV 184
Query: 182 IGRRFLFVGLPLKIRKGSGSPVRAV 206
+ + LP+K++ G+P R +
Sbjct: 185 QPGEYELICLPIKLQGLEGAPARVI 209
>dbj|BAB04097.1| (AP001508) unknown conserved protein in others [Bacillus
halodurans]
Length = 223
Score = 76.5 bits (185), Expect = 2e-13
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 26/175 (14%)
Query: 62 EFYMNLLKLGEHSGTHVDAPIHFIPNGKAINELPLEKFIG-EGIVIDARE---KIEIP-- 115
EF + +++ ++GT++D P H +GK ++E +E+ G EG+VI + KI++
Sbjct: 49 EFQIGKIEMVTNTGTYIDVPFHRYADGKDLSEATVEQMAGLEGVVIPVDKHVKKIDVDVF 108
Query: 116 --QEVEGKIVLLLTGGKE-------------ITIEIAKELVDRNVKAVGIDGMSIGNEE- 159
++ GK VL+ TG E +T E A L ++ V VGID +I +
Sbjct: 109 KSADLHGKAVLIYTGWDEHWNTERYFEDHPYVTEEAANYLKEQKVALVGIDSHNIDDTSG 168
Query: 160 ----VHKVLLSAEIPIYENLVNLEKLIGRRFLFVGLPLKIRKGSGSPVRAVAIIM 210
VH +LL A+I I E+L L +L+ + FLF + K + PVRA A I+
Sbjct: 169 KRRPVHTILLRADILIVEHLCKLGQLVDQSFLFYAVAPKFKGAGTFPVRAFAEIV 223
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77773230
Number of Sequences: 2977
Number of extensions: 3363754
Number of successful extensions: 7815
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7801
Number of HSP's gapped (non-prelim): 8
length of query: 217
length of database: 189,106,746
effective HSP length: 55
effective length of query: 162
effective length of database: 156,189,961
effective search space: 25302773682
effective search space used: 25302773682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)