BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0998 (PAB0998) DE:Hypothetical protein
         (241 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75064 hypothetical protein PAB0998 - Pyrococcus abyssi (st...   487  e-137

>pir||E75064 hypothetical protein PAB0998 - Pyrococcus abyssi (strain Orsay)
           >gi|5458923|emb|CAB50410.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 241
           
 Score =  487 bits (1239), Expect = e-137
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MEVNLVQKKFLMGIVVGLLTIGMIAESVAAAPWDNQITPKSGVGLGSYVSISIENAKHYS 60
           MEVNLVQKKFLMGIVVGLLTIGMIAESVAAAPWDNQITPKSGVGLGSYVSISIENAKHYS
Sbjct: 1   MEVNLVQKKFLMGIVVGLLTIGMIAESVAAAPWDNQITPKSGVGLGSYVSISIENAKHYS 60

Query: 61  IMLFPNAPIRVLDVWRVKENTWYIIEVKYYRIPLSGQYQFAVILPESAEVNLKEATDLDG 120
           IMLFPNAPIRVLDVWRVKENTWYIIEVKYYRIPLSGQYQFAVILPESAEVNLKEATDLDG
Sbjct: 61  IMLFPNAPIRVLDVWRVKENTWYIIEVKYYRIPLSGQYQFAVILPESAEVNLKEATDLDG 120

Query: 121 KKILSDEYKKVEYLGPWLGRNSFHFKKEGWLAWKVGVRLPTKFTKRGWTIIGTVGTSMSS 180
           KKILSDEYKKVEYLGPWLGRNSFHFKKEGWLAWKVGVRLPTKFTKRGWTIIGTVGTSMSS
Sbjct: 121 KKILSDEYKKVEYLGPWLGRNSFHFKKEGWLAWKVGVRLPTKFTKRGWTIIGTVGTSMSS 180

Query: 181 FGDSGKLIASFYGIKRLVESLGKKFTLSALKKLALRSNFIGLIVTIIETGLNVDIGFIYV 240
           FGDSGKLIASFYGIKRLVESLGKKFTLSALKKLALRSNFIGLIVTIIETGLNVDIGFIYV
Sbjct: 181 FGDSGKLIASFYGIKRLVESLGKKFTLSALKKLALRSNFIGLIVTIIETGLNVDIGFIYV 240

Query: 241 G 241
           G
Sbjct: 241 G 241


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.417 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87328342
Number of Sequences: 2977
Number of extensions: 3614504
Number of successful extensions: 7107
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7106
Number of HSP's gapped (non-prelim): 1
length of query: 241
length of database: 189,106,746
effective HSP length: 53
effective length of query: 188
effective length of database: 157,386,935
effective search space: 29588743780
effective search space used: 29588743780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)