BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1002 (PAB1002) DE:Hypothetical protein
(428 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75064 hypothetical protein PAB1002 - Pyrococcus abyssi (st... 864 0.0
pir||C82942 conserved hypothetical UU038 [imported] - Ureaplasma... 112 9e-24
pir||H75098 hypothetical protein PAB0790 - Pyrococcus abyssi (st... 108 1e-22
pir||F75302 ATP-dependent DNA helicase RecG-related protein - De... 83 7e-15
sp|O50224|RECG_THIFE ATP-DEPENDENT DNA HELICASE RECG >gi|1126750... 70 5e-11
>pir||G75064 hypothetical protein PAB1002 - Pyrococcus abyssi (strain Orsay)
>gi|5458925|emb|CAB50412.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 428
Score = 864 bits (2207), Expect = 0.0
Identities = 428/428 (100%), Positives = 428/428 (100%)
Query: 1 MNIEEFLKLIREGESERIEFKSRVTKDIHKEICALANAYGGYIIIGVGKDGKLIGCNAKE 60
MNIEEFLKLIREGESERIEFKSRVTKDIHKEICALANAYGGYIIIGVGKDGKLIGCNAKE
Sbjct: 1 MNIEEFLKLIREGESERIEFKSRVTKDIHKEICALANAYGGYIIIGVGKDGKLIGCNAKE 60
Query: 61 AREKISQSLLSIIPPVRIKTHVIKIDNKEFLVIEVPKSNTLCTVGGVAYIRVGNSIRPLS 120
AREKISQSLLSIIPPVRIKTHVIKIDNKEFLVIEVPKSNTLCTVGGVAYIRVGNSIRPLS
Sbjct: 61 AREKISQSLLSIIPPVRIKTHVIKIDNKEFLVIEVPKSNTLCTVGGVAYIRVGNSIRPLS 120
Query: 121 IHEIIMLSTELGALTWDEVPVEPFNNAKREYIEWFFDAMEKARGRKIPKEDWNRYLRSIK 180
IHEIIMLSTELGALTWDEVPVEPFNNAKREYIEWFFDAMEKARGRKIPKEDWNRYLRSIK
Sbjct: 121 IHEIIMLSTELGALTWDEVPVEPFNNAKREYIEWFFDAMEKARGRKIPKEDWNRYLRSIK 180
Query: 181 AVKGDKLTNAGVLFFTDVETMPHAGGRIIYMRGDEPIATKEFHGPIWKVIDEMFNELERN 240
AVKGDKLTNAGVLFFTDVETMPHAGGRIIYMRGDEPIATKEFHGPIWKVIDEMFNELERN
Sbjct: 181 AVKGDKLTNAGVLFFTDVETMPHAGGRIIYMRGDEPIATKEFHGPIWKVIDEMFNELERN 240
Query: 241 FKWLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYTISSDVRVFVYADRLIIKNPGGLM 300
FKWLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYTISSDVRVFVYADRLIIKNPGGLM
Sbjct: 241 FKWLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYTISSDVRVFVYADRLIIKNPGGLM 300
Query: 301 PGVDLDDPEHVPRNPVLSQLLYDSGYIEKYGYGIRMMRSECKKHGLVEIEFKAGANTFEV 360
PGVDLDDPEHVPRNPVLSQLLYDSGYIEKYGYGIRMMRSECKKHGLVEIEFKAGANTFEV
Sbjct: 301 PGVDLDDPEHVPRNPVLSQLLYDSGYIEKYGYGIRMMRSECKKHGLVEIEFKAGANTFEV 360
Query: 361 IFRKKTEELLDEEDKIILELLSEPKSSGEIERVLGLSKPTILKRLERLINLGLVKKLGSG 420
IFRKKTEELLDEEDKIILELLSEPKSSGEIERVLGLSKPTILKRLERLINLGLVKKLGSG
Sbjct: 361 IFRKKTEELLDEEDKIILELLSEPKSSGEIERVLGLSKPTILKRLERLINLGLVKKLGSG 420
Query: 421 RSTKYVRA 428
RSTKYVRA
Sbjct: 421 RSTKYVRA 428
>pir||C82942 conserved hypothetical UU038 [imported] - Ureaplasma urealyticum
>gi|6898985|gb|AAF30443.1|AE002103_8 (AE002103)
conserved hypothetical [Ureaplasma urealyticum]
Length = 463
Score = 112 bits (277), Expect = 9e-24
Identities = 113/460 (24%), Positives = 215/460 (46%), Gaps = 66/460 (14%)
Query: 14 ESERIEFKSRVTKDIHKEICALANAYGGYIIIGVGKDGKLIGC-NAKEAREKISQSLLSI 72
+ E++E K K K +C AN GG +I GV ++ ++G N E IS+++ +
Sbjct: 16 KKEKLEKKK--IKSWLKSVCTFANGQGGKLIFGVNENNNVLGLENYLNDSEFISETIKTK 73
Query: 73 IPPV-RIKTHVIKIDNKEFLVIEV-----PKSNTLCTVGGVAYIRVGNSIRPLSIHEIIM 126
I + + + +NK L++ + P + Y RVGN SI++++
Sbjct: 74 IDNIPEFDIEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQSVIASINDLLN 133
Query: 127 LSTELGALTWDEVPVEPFNNAKREYIEWFFDAMEKARGRKIPKEDW-NRYLRSIKAVKGD 185
T+D + + ++ M K +K + W +++L+S + + +
Sbjct: 134 WCLRSQNRTYDSL-------VSNKLLKDVSFLMLKNEYQKHTENLWEDKFLKSFELIDNN 186
Query: 186 K-LTNAGVLFFTDVETMPHAGGRIIYMRGD---------------EPIATKEFHGPIWKV 229
LTNAG LF A G +Y G E + EF G + +
Sbjct: 187 NYLTNAGALF---------ADGYQVYQSGVFCTRWNGKTKTNGLIEALDDAEFEGNLLFL 237
Query: 230 IDEMFNELERNFKWLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYT-ISSDVRVFVYA 288
++ N ++RN K + R++ PEYP +AV+E I+NA HR+Y+ I S+V + +Y
Sbjct: 238 LNSSINFIKRNSKNMWRKGVLYRIQYPEYPIKAVQEVIVNALIHRDYSIIGSEVHIDMYD 297
Query: 289 DRLIIKNPGGLMPG-----VDLDDPEHVPRNPVLSQLLYDSGYIEKYGYGIR----MMRS 339
DRL + +PGG+ G +DL + + RNP+L+ L +E+ G G++ + S
Sbjct: 298 DRLEVYSPGGMFDGNFVQNIDLYNVWSIRRNPILADLFARMNLMERRGSGLKNILEIYAS 357
Query: 340 ECKKHGLVEIEFKAGANTFEVIFRKKT--EELLDEED----------KIILELLSE-PKS 386
+ ++ EF++ + F V+ + E+ + + + K I+E + + PK+
Sbjct: 358 KENYREDLKPEFRSTESAFFVVLKNLNYQEQNISKNENQKISPSQRRKKIIEFIGQNPKT 417
Query: 387 SG-EIERVLGLSKPTILKRLERLINLGLVKKLGSGRSTKY 425
+ E+ ++ +S TI + L +L++ G V+ +GS ++ ++
Sbjct: 418 TAYELTKIFFVSINTIERDLAKLVHDGYVEFVGSSKNGEW 457
>pir||H75098 hypothetical protein PAB0790 - Pyrococcus abyssi (strain Orsay)
>gi|5458605|emb|CAB50093.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 287
Score = 108 bits (268), Expect = 1e-22
Identities = 79/285 (27%), Positives = 136/285 (47%), Gaps = 10/285 (3%)
Query: 9 LIREGESERIEFKSRVTKDIHKEICALANAYGGYIIIGVGKDGKLIGCNAK-EAREKISQ 67
LI++GESE IEFK + ++K + A AN GG +++GV DGK+ G + ++ + +
Sbjct: 6 LIKKGESETIEFKRELNDSVYKTLSAFANTDGGILLLGVSNDGKVFGFSGDLDSLARSIR 65
Query: 68 SLLSIIPPVRIKTHVIKIDNKEFLVIEVPKSNTLCTVGGVAYIRVGNSIRPLSIHEIIML 127
L I PP++++ +I K+ ++I+V KS + G Y RVG + ++
Sbjct: 66 HNLRINPPIKVE----EIGEKKVVIIDVSKSPVPISFKGRYYKRVGAQTVEMGWEDLQRF 121
Query: 128 STELGALTWDEVPVE-PFNNAKREYIEWFFDAMEKARGRKIPKEDWNRYLRSIKAVKGDK 186
+ +TWD +P + E I F ED L + ++ K
Sbjct: 122 FLQKSGVTWDSLPSSAALEDLDEETIRKFVHMARNRLPYINENEDVESILDKLGLLEDGK 181
Query: 187 LTNAGVLFFTDVETMPHAGGRIIYMRGDEPIA---TKEFHGPIWKVIDEMFNELERNF-K 242
+TNA +L F + ++ R +PI KE G ++ ++E+ + +
Sbjct: 182 ITNAALLLFGKEPQRYYIQAKVRIGRFKDPITIIDDKEIGGNLFTQVEEVMKVIMSHIGV 241
Query: 243 WLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYTISSDVRVFVY 287
E +R I +YP A+REAIINA HR+YT S+V++ ++
Sbjct: 242 RYEFEGELRRKEIWDYPLDALREAIINALIHRDYTDPSNVQIKIF 286
>pir||F75302 ATP-dependent DNA helicase RecG-related protein - Deinococcus
radiodurans (strain R1)
>gi|6460002|gb|AAF11748.1|AE002053_3 (AE002053)
ATP-dependent DNA helicase RecG-related protein
[Deinococcus radiodurans]
Length = 596
Score = 82.7 bits (201), Expect = 7e-15
Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 20/226 (8%)
Query: 220 KEFHGPIWKVIDEMFNELERNFKWLEVTVGAKRVRIPEYPPRAVREAIINAFAHRNYTIS 279
++ PI ++ + ++ ++ V VG RV + ++ REA++NA HR+YT+
Sbjct: 236 EDLRRPIPSLLLRLSELIQARNRFTPVQVGLFRVEVWDHDESVYREALLNALTHRDYTLR 295
Query: 280 SDVRVFVYADRLIIKNPGGLMPGVDLDD-PEHVP--RNPVLSQLLYDSGYIEKYGYGIRM 336
V V Y DRL I NPGG G+ + H P RNP+L+ +L G +E+ G G+
Sbjct: 296 DVVHVHHYPDRLEIMNPGGFPGGITPGNILRHQPKRRNPLLAGVLARLGLVEQAGVGVDK 355
Query: 337 MRSECKKHGLVEIEF-------------KAGANTFEVIFRKKTEEL--LDEEDKIILELL 381
M S +HG E+ A + F +K EEL L + I+L LL
Sbjct: 356 MFSLMLRHGKEPPEYVNYPDAVTLTLHGSAFDSDFVRFVARKQEELPQLSLDMLIVLSLL 415
Query: 382 SEPKSS--GEIERVLGLSKPTILKRLERLINLGLVKKLGSGRSTKY 425
S + ++ R L L + + L ++ +L L+ + G GR Y
Sbjct: 416 SREGEAPRAQLARALQLPEDRTPRLLRQMEDLALITRAGIGRGIAY 461
>sp|O50224|RECG_THIFE ATP-DEPENDENT DNA HELICASE RECG >gi|11267506|pir||T45499 probable
DNA recombinase recG [imported] - Thiobacillus
ferrooxidans >gi|2653995|gb|AAC21662.1| (AF032884) RecG
[Acidithiobacillus ferrooxidans]
Length = 652
Score = 69.9 bits (168), Expect = 5e-11
Identities = 56/201 (27%), Positives = 93/201 (45%), Gaps = 25/201 (12%)
Query: 185 DKLTNAGVLFF--TDVETMPHAGGRIIYMRG-DEPIATKE---FHGPIWKVIDEMFNELE 238
D +T +G+L F T +P AG + G D+ A +E GP+ ++++ + +E
Sbjct: 448 DGITVSGILLFGRTPNRFLPQAGIDAVAFPGVDKDYAARERAALRGPMTPLLNDAGDIVE 507
Query: 239 RNFKWLEVTV--------------GAKRVRIPEYPPRAVREAIINAFAHRNYTISS-DVR 283
+ GA+R +P YP A+REAI+NA HR+Y +SS D+
Sbjct: 508 AGLVEQAIAFVQRNTAIGGQLEEGGARRENLPAYPREAIREAIVNALIHRDYLLSSTDIE 567
Query: 284 VFVYADRLIIKNPGGLMPGVD---LDDPEHVPRNPVLSQLLYDSGYIEKYGYGIRMMRSE 340
+ +Y DRL I +PG L G+ + RN ++ ++ D Y+E G G+ +
Sbjct: 568 LSIYEDRLEITSPGRLPNGITPARMLTGCRATRNQLIKDVMRDYRYLEHSGMGVPRKIVK 627
Query: 341 C-KKHGLVEIEFKAGANTFEV 360
C ++H E + F V
Sbjct: 628 CMREHNGTEPQLIEDGELFTV 648
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164428665
Number of Sequences: 2977
Number of extensions: 7122476
Number of successful extensions: 17453
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17441
Number of HSP's gapped (non-prelim): 8
length of query: 428
length of database: 189,106,746
effective HSP length: 55
effective length of query: 373
effective length of database: 156,189,961
effective search space: 58258855453
effective search space used: 58258855453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)