BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1005 (eif-6) DE:PUTATIVE TRANSLATION INITIATION FACTOR 6
(EIF-6).
(227 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75066 probable translation initiation factor aIF-6 PAB1005... 449 e-125
sp|O58264|IF6_PYRHO PUTATIVE TRANSLATION INITIATION FACTOR 6 (EI... 418 e-116
sp|Q60357|IF6_METJA PUTATIVE TRANSLATION INITIATION FACTOR 6 (EI... 183 1e-45
sp|Q9YD27|IF6_AERPE PUTATIVE TRANSLATION INITIATION FACTOR 6 (EI... 183 2e-45
sp|O27648|IF6_METTH PUTATIVE TRANSLATION INITIATION FACTOR 6 (EI... 182 4e-45
gb|AAK40681.1| Translation initiation factor 6 (eiF 6) (eiF6) [S... 164 1e-39
emb|CAC11203.1| (AL445063) translation initiation factor eIF-6 r... 136 2e-31
gi|6325273 Similar to human translation initiation factor 6 (eIF... 131 7e-30
pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 131 7e-30
sp|P38619|IF6_SULAC PUTATIVE TRANSLATION INITIATION FACTOR 6 (EI... 127 8e-29
gb|AAF97182.1|AF268611_5 (AF268611) translation initiatin factor... 127 1e-28
pir||T47701 translation initiation factor eIF-6-like protein [im... 126 2e-28
sp|P56538|IF6_DROME EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (... 120 1e-26
gi|11499647 conserved hypothetical protein [Archaeoglobus fulgid... 119 2e-26
sp|O94476|IF6_SCHPO EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (... 116 2e-25
gi|4504771 integrin beta 4 binding protein; p27BBP; eukaryotic t... 116 3e-25
sp|O55135|IF6_MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (... 116 3e-25
gb|AAF07396.1|AF108462_1 (AF108462) b4 integrin interactor homol... 116 3e-25
sp|O81920|IF6_BETVU EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (... 115 6e-25
dbj|BAA87842.1| (AP000815) ESTs C98259(C1345),D15820(C1345) corr... 112 4e-24
pir||JC7273 inducible mast cell-415 protein - bovine >gi|6006746... 111 5e-24
gb|AAF72895.2|AF228511_3 (AF228511) putative translation factor ... 111 7e-24
sp|O62106|IF6_CAEEL EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (... 100 1e-20
sp|O22290|IF6_ARATH EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (... 100 2e-20
gb|AAF07057.1|AF179902_1 (AF179902) integrin interactor protein ... 68 1e-10
>pir||E75066 probable translation initiation factor aIF-6 PAB1005 [imported] -
Pyrococcus abyssi (strain Orsay)
>gi|5458939|emb|CAB50426.1| (AJ248287) PUTATIVE
TRANSLATION INITIATION FACTOR 6 (EIF-6). [Pyrococcus
abyssi]
Length = 227
Score = 449 bits (1143), Expect = e-125
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MHIERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGT 60
MHIERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGT
Sbjct: 1 MHIERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGT 60
Query: 61 LATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVS 120
LATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVS
Sbjct: 61 LATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVS 120
Query: 121 AKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFK 180
AKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFK
Sbjct: 121 AKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFK 180
Query: 181 VDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI 227
VDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI
Sbjct: 181 VDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI 227
>sp|O58264|IF6_PYRHO PUTATIVE TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7450222|pir||D71166 hypothetical protein PH0528 -
Pyrococcus horikoshii >gi|3256934|dbj|BAA29617.1|
(AP000002) 227aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 227
Score = 418 bits (1064), Expect = e-116
Identities = 205/227 (90%), Positives = 217/227 (95%)
Query: 1 MHIERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGT 60
MHIERLDFENSPYLGVFGVATDRVVL+REGLQEKKLEVIRE LKVPVIE S+MKSRIIGT
Sbjct: 1 MHIERLDFENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLKVPVIEVSVMKSRIIGT 60
Query: 61 LATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVS 120
LATGNSNAI++PWYVWD EIERIK A EYGI+ E+VPFR+KYTALGNLILTNDKAALVS
Sbjct: 61 LATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVS 120
Query: 121 AKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFK 180
AKFSR EA+EIG+ILGVEVERG+IAGLHAVGSAGVVTNKGGLVHPE SDEELEWLS+LFK
Sbjct: 121 AKFSRKEAQEIGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFK 180
Query: 181 VDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI 227
VDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALG +
Sbjct: 181 VDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGFV 227
>sp|Q60357|IF6_METJA PUTATIVE TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|2127991|pir||H64305 hypothetical protein homolog
MJ0048 - Methanococcus jannaschii
>gi|11513603|pdb|1G61|A Chain A, Crystal Structure Of
M.Jannaschii Eif6 >gi|11513604|pdb|1G61|B Chain B,
Crystal Structure Of M.Jannaschii Eif6
>gi|1498809|gb|AAB98029.1| (U67463) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 228
Score = 183 bits (461), Expect = 1e-45
Identities = 104/226 (46%), Positives = 143/226 (63%), Gaps = 2/226 (0%)
Query: 3 IERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGTLA 62
I R F P +GV + T+ + L+ L + + + EVL+ ++ +I S ++G+L+
Sbjct: 4 IIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLS 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
N +L+P V D E++RIK+ KE ++ + ++K TALGNLILTNDK AL+S +
Sbjct: 64 VANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPE 123
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
+D K+I D L VEVE G IA L VGS VVTNKG L HP D+ELE+L LFKV+
Sbjct: 124 L-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVE 182
Query: 183 -VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI 227
+ GTAN G VG C++ANS G VVG TTGPE++ IE+ALGLI
Sbjct: 183 YIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGLI 228
>sp|Q9YD27|IF6_AERPE PUTATIVE TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7450220|pir||F72708 probable translation initiation
factor aIF-6 APE1085 [imported] - Aeropyrum pernix
(strain K1) >gi|5104755|dbj|BAA80070.1| (AP000060) 233aa
long hypothetical eukaryotic translation initiation
factor 6 [Aeropyrum pernix]
Length = 233
Score = 183 bits (459), Expect = 2e-45
Identities = 102/226 (45%), Positives = 145/226 (64%), Gaps = 8/226 (3%)
Query: 3 IERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVP---VIEASIMKSRIIG 59
+E+L +P +GV+ A+D VL + + + I EVL V V+ ++ R++G
Sbjct: 9 VEKLSLYGNPNIGVYLTASDSYVLAPDDIGADDVRTISEVLGVAMERVVRLRVLGMRLVG 68
Query: 60 TLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALV 119
L TGNS IL+P V D E+E ++ A + G+E IVP T+ ALGN+I+ ND+A L
Sbjct: 69 VLTTGNSRGILLPEGV-DREVELVRKALE--GVEVGIVP--TRSNALGNVIVCNDRACLA 123
Query: 120 SAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELF 179
S ++ K + D LGVEV G +AG++ VGSA VVTN+GGL HP+AS+EEL++LS++F
Sbjct: 124 SPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVF 183
Query: 180 KVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALG 225
KV GT N GV +V T ++ANS G +VG TTGPEI +I+ ALG
Sbjct: 184 KVPFEAGTINFGVEFVRTGLVANSYGALVGEDTTGPEIARIQVALG 229
>sp|O27648|IF6_METTH PUTATIVE TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7450219|pir||C69082 conserved hypothetical protein
MTH1611 - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622736|gb|AAB86084.1| (AE000920) conserved
protein [Methanobacterium thermoautotrophicum]
Length = 222
Score = 182 bits (456), Expect = 4e-45
Identities = 99/225 (44%), Positives = 140/225 (62%), Gaps = 6/225 (2%)
Query: 3 IERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGTLA 62
I R++ +P LGV+ TD V L+ + EK V+RE L+V V++ SI S + G LA
Sbjct: 2 IRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALA 61
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GNSN +V D EI+ + +A G+E +P R +TA+GNL+L ND A+ S
Sbjct: 62 VGNSNGFVVSNQAMDREIDALAAA----GVEAVRIPER--FTAVGNLVLANDNGAVASPL 115
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
S D + IGD+L V+V+ +AGL+ VGS G TN+G L++P+AS EE+ + + V+
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVE 175
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI 227
VGT N GV +G C +ANSNGV+VG TTGPE+ +IEEALG +
Sbjct: 176 ADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFL 220
>gb|AAK40681.1| Translation initiation factor 6 (eiF 6) (eiF6) [Sulfolobus
solfataricus]
Length = 223
Score = 164 bits (410), Expect = 1e-39
Identities = 90/226 (39%), Positives = 140/226 (61%), Gaps = 5/226 (2%)
Query: 1 MHIERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGT 60
M+++RL + +GV+ ++ ++ GL + E I +VL ++EA I +S ++G
Sbjct: 1 MNLQRLSVFGTDNIGVYIYTNNKYTIIPRGLDSETKENIAQVLGTELLEAEISRSFLLGI 60
Query: 61 LATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVS 120
+GN N IL+P D E +K ++ +E +K TALGN IL N+KAAL+
Sbjct: 61 FISGNDNGILLPKSTIDDEFRFLKENLRDCRVEI----LNSKVTALGNTILANNKAALIY 116
Query: 121 AKFSRDEAKEIGDILGVE-VERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELF 179
+F+ E K I + LGVE ++RG IA + VGS GV+TNKGGLVH + S++EL+ L +LF
Sbjct: 117 PEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLF 176
Query: 180 KVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALG 225
V + +GT N G ++ + ++AN G +VG TTGPEI++I++ALG
Sbjct: 177 GVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGPEILRIQKALG 222
>emb|CAC11203.1| (AL445063) translation initiation factor eIF-6 related protein
[Thermoplasma acidophilum]
Length = 189
Score = 136 bits (340), Expect = 2e-31
Identities = 80/192 (41%), Positives = 112/192 (57%), Gaps = 8/192 (4%)
Query: 33 EKKLEVIREVLKVPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGI 92
EK + +EVL+V V SI S +IGT+ NSN ++VP+ T + +
Sbjct: 5 EKTVADFQEVLQVDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDLDGR------ 58
Query: 93 ETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGS 152
++ + K A+GN I+ ND A++ FS KEI D LGVE R I + VGS
Sbjct: 59 --NVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGS 116
Query: 153 AGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLT 212
AG++T+KG LV+PE D+ELE+L + FKV V GTAN G YVG ++ANS GV+VG T
Sbjct: 117 AGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVANSKGVLVGKDT 176
Query: 213 TGPEIVKIEEAL 224
T E+ +I++ L
Sbjct: 177 TPIEMDRIDDVL 188
>gi|6325273 Similar to human translation initiation factor 6 (eIF6); Tif6p
[Saccharomyces cerevisiae]
>gi|3122261|sp|Q12522|IF6_YEAST EUKARYOTIC TRANSLATION
INITIATION FACTOR 6 (EIF-6) >gi|1362412|pir||S57550
hypothetical protein YPR016c - yeast (Saccharomyces
cerevisiae) >gi|887594|emb|CAA90161.1| (Z49919) unknown
[Saccharomyces cerevisiae] >gi|939749|gb|AAA97594.1|
(U31900) Lpz15p [Saccharomyces cerevisiae]
>gi|1314090|emb|CAA95012.1| (Z71255) unknown
[Saccharomyces cerevisiae]
Length = 245
Score = 131 bits (326), Expect = 7e-30
Identities = 82/224 (36%), Positives = 116/224 (51%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVL--KVPVIEASIMKSRIIGTLA 62
R FENS +GVF T+ LV G E L +P++ +I +RIIG +
Sbjct: 4 RTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMT 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN +LVP D E++ ++++ + +I + +ALGN+I ND ALV
Sbjct: 64 AGNRRGLLVPTQTTDQELQHLRNSLPD---SVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
R+ + I D+LGVEV R I+G VGS ++N+GGLVHP+ S ++ E LS L +V
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G VG M+ N V G TT PE+ IE L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224
>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6
Length = 224
Score = 131 bits (326), Expect = 7e-30
Identities = 82/224 (36%), Positives = 116/224 (51%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVL--KVPVIEASIMKSRIIGTLA 62
R FENS +GVF T+ LV G E L +P++ +I +RIIG +
Sbjct: 4 RTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMT 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN +LVP D E++ ++++ + +I + +ALGN+I ND ALV
Sbjct: 64 AGNRRGLLVPTQTTDQELQHLRNSLPD---SVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
R+ + I D+LGVEV R I+G VGS ++N+GGLVHP+ S ++ E LS L +V
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G VG M+ N V G TT PE+ IE L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224
>sp|P38619|IF6_SULAC PUTATIVE TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|1076158|pir||S53700 hypothetical protein 1 -
Sulfolobus acidocaldarius >gi|453440|emb|CAA54640.1|
(X77509) ao2sac [Sulfolobus acidocaldarius]
>gi|1095508|prf||2109236C ORF 1 [Sulfolobus
acidocaldarius]
Length = 203
Score = 127 bits (317), Expect = 8e-29
Identities = 74/207 (35%), Positives = 123/207 (58%), Gaps = 5/207 (2%)
Query: 1 MHIERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGT 60
M +++L + +G++ D+ ++ + ++ +E I+ +LK +I+ +I KS ++G
Sbjct: 1 MILDKLSIFGTDNIGIYIFTNDKYTIIPKIDDKEVIEKIQGILKTEIIQTTISKSVLVGI 60
Query: 61 LATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVS 120
L TGN++ IL+P EI+ IK K+ + E+V R TALGN+IL+N AL+
Sbjct: 61 LVTGNNDVILLPRTALADEIKVIKEQAKD--VRVEVVDIRP--TALGNIILSNTHGALIY 116
Query: 121 AKFSRDEAKEIGDILGVEVE-RGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELF 179
S E ++ L ++ +G IA + VGS V+T+K GLVH +A++EEL+ LSELF
Sbjct: 117 QDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELF 176
Query: 180 KVDVYVGTANMGVPYVGTCMLANSNGV 206
KV + GT N G ++ + ++AN NGV
Sbjct: 177 KVKLDSGTVNFGSVFIRSGLVANRNGV 203
>gb|AAF97182.1|AF268611_5 (AF268611) translation initiatin factor 6 [uncultured marine group
II euryarchaeote 37F11]
Length = 220
Score = 127 bits (315), Expect = 1e-28
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%)
Query: 1 MHIERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGT 60
M I+ LD S +G+ + V+ L +E + +V+ + + SI S +IG
Sbjct: 1 MPIDTLDIHGSDQIGIHLASVGNVLFHPRELPTPTIEKLEQVVGLELAPISIGGSNLIGA 60
Query: 61 LATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVS 120
L GN+ + V +++I+ A YG ++V GNL+L N++ + S
Sbjct: 61 LLAGNTKGMAVADIATESDID----ALTAYG---DVVVMEGGVNTAGNLLLVNEQGCVAS 113
Query: 121 AKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFK 180
+D + ++LGV++ I G VGS GVV ++G L+HP+ + EE+ + E+
Sbjct: 114 PSIPKDGLDILSEVLGVDIISTTIGGQDVVGSLGVVNSQGVLLHPDVAPEEVLLIEEILG 173
Query: 181 VDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI 227
V VGT + G PYVG + A++NG + G TTGPE+ +IE+ALGLI
Sbjct: 174 VPPMVGTVSFGSPYVGAGICASNNGALAGSETTGPELNRIEDALGLI 220
>pir||T47701 translation initiation factor eIF-6-like protein [imported] -
Arabidopsis thaliana >gi|7263550|emb|CAB81587.1|
(AL161667) eukaryotic translation initiation factor 6
(EIF-6)-like protein [Arabidopsis thaliana]
Length = 245
Score = 126 bits (313), Expect = 2e-28
Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
RL FEN+ +GVF T+ LV G E L +P+++ SI +RIIG L
Sbjct: 4 RLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIGRLC 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN N +LVP D E++ ++++ + + I + +ALGN I ND AL
Sbjct: 64 AGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRI---DERLSALGNCIACNDYVALAHTD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
++ + I D+LGVEV R IAG VGS ++NKGG+VHP S E+LE LS L +V
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G + M N G TT E+ I+ L
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKL 224
>sp|P56538|IF6_DROME EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7291652|gb|AAF47074.1| (AE003462) bgcn gene product
[Drosophila melanogaster]
Length = 245
Score = 120 bits (299), Expect = 1e-26
Identities = 79/224 (35%), Positives = 115/224 (51%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVL--KVPVIEASIMKSRIIGTLA 62
R+ FEN+ +GVF T+ LV G E L +PV+ A++ RIIG L
Sbjct: 4 RVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLT 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN N +LVP D E++ ++++ + +I + +ALGN+I ND ALV
Sbjct: 64 VGNRNGLLVPNSTTDEELQHLRNSLPD---AVKIYRVEERLSALGNVIACNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
++ + I D+L VEV R IA VGS V++N+GG+VHP+ S ++ + LS L +V
Sbjct: 121 LDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G + M+ N VG TT EI IE L
Sbjct: 181 LVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKL 224
>gi|11499647 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3122256|sp|O28214|IF6_ARCFU PUTATIVE TRANSLATION
INITIATION FACTOR 6 (EIF-6) >gi|7450218|pir||H69507
conserved hypothetical protein AF2065 - Archaeoglobus
fulgidus >gi|2648468|gb|AAB89188.1| (AE000961) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 215
Score = 119 bits (296), Expect = 2e-26
Identities = 68/214 (31%), Positives = 114/214 (52%), Gaps = 8/214 (3%)
Query: 11 SPYLGVFGVATDRVVLVREGLQEKKLEVIREVLKVPVIEASIMKSRIIGTLATGNSNAIL 70
+P +G++ ++ +V E ++ I+E L V VI I S ++G + NS +
Sbjct: 8 NPLIGLYAKVSEEYAVVGVN-HEPLIDAIQEKLDVDVIVTKIAGSELVGAMMALNSRGAV 66
Query: 71 VPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKE 130
V V +E+ ++ + IET + T GN +L ND+ + + + ++
Sbjct: 67 VSDQVLSSELRELEKSLDVLVIETPM-------TCFGNNLLINDRGGIANPEMESSVVEK 119
Query: 131 IGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANM 190
+ D + +E+ +G + G+ VG A VVTN+GGL +P ++ E + L E+ V+V GT N
Sbjct: 120 VADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNF 179
Query: 191 GVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEAL 224
G VG+ ++ANS G VVG TTG E+ +EEAL
Sbjct: 180 GTDMVGSGLVANSKGYVVGRDTTGFELGIVEEAL 213
>sp|O94476|IF6_SCHPO EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7490545|pir||T41234 translation initiation factor
eIF-6 [imported] - fission yeast (Schizosaccharomyces
pombe) >gi|4107312|emb|CAA22640.1| (AL035075) eukaryotic
translation initiation factor 6 [Schizosaccharomyces
pombe]
Length = 244
Score = 116 bits (288), Expect = 2e-25
Identities = 77/224 (34%), Positives = 110/224 (48%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
R FENS +GVF T+ LV G E V L VPV+ +I +RIIG L
Sbjct: 4 RAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLT 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN +LVP D E++ ++++ + +I + +ALGN++ ND ALV
Sbjct: 64 CGNRKGLLVPSSTTDNELQHLRNSLPD---PVKIQRVDERLSALGNIVACNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
R+ + I D+L VEV R +AG GS ++N+G LVHP S +E + LS L +V
Sbjct: 121 IERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G +G ++ N G TT E+ E L
Sbjct: 181 LVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKL 224
>gi|4504771 integrin beta 4 binding protein; p27BBP; eukaryotic translation
initiation factor 3A [Homo sapiens]
>gi|11422314|ref|XP_009691.1| integrin beta 4 binding
protein [Homo sapiens] >gi|3122258|sp|P56537|IF6_HUMAN
EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6) (B4
INTEGRIN INTERACTOR) (CAB) (P27(BBP)) (B(2)GCN HOMOLOG)
>gi|2809383|gb|AAB97735.1| (AF022229) translation
initiation factor 6 [Homo sapiens]
>gi|2910997|emb|CAA72243.1| (Y11435) b4 integrin
interactor [Homo sapiens] >gi|3335506|gb|AAC39897.1|
(AF047433) b(2)gcn homolog [Homo sapiens]
>gi|11342571|emb|CAC17101.1| (AL121753) dJ614O4.2
(integrin beta 4 binding protein) [Homo sapiens]
Length = 245
Score = 116 bits (287), Expect = 3e-25
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
R FEN+ +G F T+ LV G E V L +PV+ ASI RIIG +
Sbjct: 4 RASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMC 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN + +LVP D E++ I+++ + +I + +ALGN+ ND ALV
Sbjct: 64 VGNRHGLLVPNNTTDQELQHIRNSLPD---TVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
R+ + + D+L VEV R +A VGS V +N+GGLVHP+ S E+ + LS L +V
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G + M+ N G TT E+ +E L
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKL 224
>sp|O55135|IF6_MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6) (B4 INTEGRIN
INTERACTOR) (CAB) (P27(BBP))
>gi|4704410|gb|AAD28078.1|AF047046_1 (AF047046)
translation initiation factor eIF6 [Mus musculus]
Length = 245
Score = 116 bits (287), Expect = 3e-25
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
R FEN+ +G F T+ LV G E V L +PV+ ASI RIIG +
Sbjct: 4 RASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMC 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN + +LVP D E++ I+++ + +I + +ALGN+ ND ALV
Sbjct: 64 VGNRHGLLVPNNTTDQELQHIRNSLPD---SVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
R+ + + D+L VEV R +A VGS V +N+GGLVHP+ S E+ + LS L +V
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G + M+ N G TT E+ +E L
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKL 224
>gb|AAF07396.1|AF108462_1 (AF108462) b4 integrin interactor homolog [Mus musculus]
Length = 245
Score = 116 bits (287), Expect = 3e-25
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
R FEN+ +G F T+ LV G E V L +PV+ ASI RIIG +
Sbjct: 4 RASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMC 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN + +LVP D E++ I+++ + +I + +ALGN+ ND ALV
Sbjct: 64 VGNRHGLLVPNNTTDQELQHIRNSLPD---SVQIWRVEERLSALGNVTTCNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
R+ + + D+L VEV R +A VGS V +N+GGLVHP+ S E+ + LS L +V
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ GT N G + M+ N G TT E+ +E L
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKL 224
>sp|O81920|IF6_BETVU EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7484648|pir||T14618 probable translation initiation
factor 6 - beet (fragment) >gi|3355311|emb|CAA08809.1|
(AJ009737) eukaryotic translation initiation factor 6
[Beta vulgaris]
Length = 193
Score = 115 bits (284), Expect = 6e-25
Identities = 73/189 (38%), Positives = 98/189 (51%), Gaps = 5/189 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
RL FEN+ +GVF T+ LV G E L +PV++ SI +RIIG
Sbjct: 4 RLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNV 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
N N +LVP D E++ +++ + + I K +ALGN I ND AL
Sbjct: 64 CRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRI---EEKLSALGNCIACNDYVALTHTD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
++ + I D+LGVEV IAG VGS +TNKGGLVHP S E+L+ LS L +V
Sbjct: 121 LDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVP 180
Query: 183 VYVGTANMG 191
+ GT N G
Sbjct: 181 LVAGTVNRG 189
>dbj|BAA87842.1| (AP000815) ESTs C98259(C1345),D15820(C1345) correspond to a region
of the predicted gene.~Similar to translation initiation
factor 6. (AF022229) [Oryza sativa]
>gi|11138067|dbj|BAB17740.1| (AP002862) putative
eukaryotic translation initiation factor 6 (EIF-6)
[Oryza sativa]
Length = 236
Score = 112 bits (277), Expect = 4e-24
Identities = 77/224 (34%), Positives = 108/224 (47%), Gaps = 15/224 (6%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
R+ FENS +GVF T+ ++ +G E V L VPV+ SI +RIIG +
Sbjct: 4 RVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIGRMC 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN N +L+P D E++ +K++ + + I + +ALGN + ND
Sbjct: 64 VGNKNGLLLPHTTTDQELQHLKNSLPDQVVVQRI---EERLSALGNCVACNDHGT----- 115
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
+ I D+LGVEV R IAG VGS +NKGGLVHP+ S E+ LS L +V
Sbjct: 116 -----EEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVP 170
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
+ G+ N G V M N G TT E+ +E L
Sbjct: 171 LAAGSINRGSEVVAAGMAVNDWAAFCGADTTATELSVVESVFRL 214
>pir||JC7273 inducible mast cell-415 protein - bovine
>gi|6006746|gb|AAF00595.1|AF141872_1 (AF141872) imc-415
homolog [Bos taurus]
Length = 245
Score = 111 bits (276), Expect = 5e-24
Identities = 75/219 (34%), Positives = 107/219 (48%), Gaps = 5/219 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
R FEN+ +G F T+ LV G E V L +PV+ ASI RIIG +
Sbjct: 4 RASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMC 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN + +LVP D E++ I++ + +I + +ALGN+ ND ALV
Sbjct: 64 VGNRHGLLVPNNTTDQELQHIRNCLPD---SVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
R+ + + D+L VEV R +A VGS V +N+GGLVHP+ S E+ + LS L +V
Sbjct: 121 LDRETEEILADVLKVEVFRQKVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIE 221
+ GT N G + M N G T E+ +E
Sbjct: 181 LVAGTVNRGSEVIAAGMAVNDWCAFCGLDATSTELSVVE 219
>gb|AAF72895.2|AF228511_3 (AF228511) putative translation factor [Trypanosoma cruzi]
Length = 244
Score = 111 bits (275), Expect = 7e-24
Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)
Query: 3 IERLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK-VPVIEASIMKSRIIGTL 61
I R FE+S +GVF T+ +++ G Q +E+ +PV+ SI SR+IG L
Sbjct: 2 ILRNTFESSDDVGVFSTLTNAMLVTAGGSQNFYSVFEQELANHIPVVYTSIGGSRVIGRL 61
Query: 62 ATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSA 121
GN + ++VP D E++ ++++ + ++ + ALGN ++ ND AL+
Sbjct: 62 TCGNRHGLVVPSIATDQELQHLRNSLPD---SVKVQRVEERLNALGNCVVCNDHVALIHT 118
Query: 122 KFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKV 181
SR+ + + D L V+ R IA VGS VV NKG +VHP+ ++++ ++ L +V
Sbjct: 119 DLSRETEEILRDTLQVQTFRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQV 178
Query: 182 DVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
V GT N G +G+ ++ N G TT EI +E L
Sbjct: 179 PVVAGTINRGNAAIGSGLVVNDWAAFCGLNTTATEITVVERIFQL 223
>sp|O62106|IF6_CAEEL EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7497541|pir||T19988 hypothetical protein C47B2.5 -
Caenorhabditis elegans >gi|3874970|emb|CAB16860.1|
(Z99709) contains similarity to Pfam domain: PF01912
(eIF-6 family), Score=422.9, E-value=9.6e-124, N=1~cDNA
EST EMBL:T00201 comes from this gene~cDNA EST yk82h4.5
comes from this gene~cDNA EST yk186d12.3 comes from this
gene~cDNA EST yk186d12.5 comes >
Length = 246
Score = 100 bits (247), Expect = 1e-20
Identities = 67/224 (29%), Positives = 111/224 (48%), Gaps = 5/224 (2%)
Query: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLA 62
R+D+E S +GVF T+ LV G + ++ L +PV+ SI +RI+G L
Sbjct: 4 RVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLT 63
Query: 63 TGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAK 122
GN + +LVP D E++ ++++ + E I + +ALGN+I ND A+V A+
Sbjct: 64 VGNRHGLLVPNATTDQELQHLRNSLPD---EVAIRRVDERLSALGNVIACNDHVAIVHAE 120
Query: 123 FSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVD 182
S + + + ++L VEV R +A VGS ++++ G LV E ++ L ++
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIP 180
Query: 183 VYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
V GT N G +G M+ N G +T E+ +E L
Sbjct: 181 VVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKL 224
>sp|O22290|IF6_ARATH EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (EIF-6)
>gi|7450217|pir||T01012 hypothetical protein T5I7.12 -
Arabidopsis thaliana >gi|2642164|gb|AAB87131.1|
(AC003000) putative translation initiation factor
[Arabidopsis thaliana]
Length = 247
Score = 100 bits (246), Expect = 2e-20
Identities = 71/232 (30%), Positives = 108/232 (45%), Gaps = 17/232 (7%)
Query: 5 RLDFENSPY-LGVFGVATDRVVLVREGLQ--------EKKLEVIREVLKVPVIEASIMKS 55
RL ++N+ +GVF T+ LV E KL+ + +P++ SI S
Sbjct: 4 RLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGV-----IPIVTTSIGGS 58
Query: 56 RIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDK 115
IG+L GN N +L+ + D E++ ++ + + E + ALGN I ND
Sbjct: 59 GTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPD---EVVVQRIEEPICALGNAIACNDY 115
Query: 116 AALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWL 175
ALV K +D + I D+LGVEV R IA VGS ++N GG+VH + EE+ L
Sbjct: 116 VALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVEL 175
Query: 176 SELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGLI 227
+ L +V + GT N G + + N G TT E+ + L+
Sbjct: 176 ANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLV 227
>gb|AAF07057.1|AF179902_1 (AF179902) integrin interactor protein [Biomphalaria glabrata]
Length = 113
Score = 67.9 bits (163), Expect = 1e-10
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 56 RIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDK 115
R+IG + GN + +LVP D E++ I++A + +I K +ALGN+I ND
Sbjct: 7 RVIGRMCVGNRHGLLVPNTTTDQELQHIRNALPD---TVKIYRAEEKLSALGNVIACNDY 63
Query: 116 AALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHP 165
ALV R+ + D L VEV R +A VGS V +N+GG+V P
Sbjct: 64 VALVHPDLDRETEDLLVDTLNVEVFRHTVANNVLVGSYTVFSNQGGMVSP 113
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80579612
Number of Sequences: 2977
Number of extensions: 3186778
Number of successful extensions: 8644
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8512
Number of HSP's gapped (non-prelim): 31
length of query: 227
length of database: 189,106,746
effective HSP length: 56
effective length of query: 171
effective length of database: 155,591,474
effective search space: 26606142054
effective search space used: 26606142054
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)