BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1006 (PAB1006) DE:Hypothetical protein
         (148 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75066 hypothetical protein PAB1006 - Pyrococcus abyssi (st...   282  1e-75
pir||B71166 hypothetical protein PH0527 - Pyrococcus horikoshii ...   257  3e-68
pir||H69081 conserved hypothetical protein MTH1609 - Methanobact...    79  2e-14
sp|Q58362|Y952_METJA HYPOTHETICAL PROTEIN MJ0952 >gi|2129075|pir...    68  5e-11

>pir||G75066 hypothetical protein PAB1006 - Pyrococcus abyssi (strain Orsay)
           >gi|5458941|emb|CAB50428.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 148
           
 Score =  282 bits (714), Expect = 1e-75
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MAQSNKELEKLAYEYQLLQAQAQLLAQNLELLNLARAEVQTVKETLENLKKIEEEKPEIL 60
           MAQSNKELEKLAYEYQLLQAQAQLLAQNLELLNLARAEVQTVKETLENLKKIEEEKPEIL
Sbjct: 1   MAQSNKELEKLAYEYQLLQAQAQLLAQNLELLNLARAEVQTVKETLENLKKIEEEKPEIL 60

Query: 61  VPIGAGSFLKGIIVDKNNAIVSVGSGYAVERSVDDAISFLEKRLNEYDDAIKKTQQALTE 120
           VPIGAGSFLKGIIVDKNNAIVSVGSGYAVERSVDDAISFLEKRLNEYDDAIKKTQQALTE
Sbjct: 61  VPIGAGSFLKGIIVDKNNAIVSVGSGYAVERSVDDAISFLEKRLNEYDDAIKKTQQALTE 120

Query: 121 LEKRLGDVAKKAQEIQQKQAMGSFKVKK 148
           LEKRLGDVAKKAQEIQQKQAMGSFKVKK
Sbjct: 121 LEKRLGDVAKKAQEIQQKQAMGSFKVKK 148


>pir||B71166 hypothetical protein PH0527 - Pyrococcus horikoshii
           >gi|3256932|dbj|BAA29615.1| (AP000002) 151aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 151
           
 Score =  257 bits (651), Expect = 3e-68
 Identities = 130/148 (87%), Positives = 144/148 (96%)

Query: 1   MAQSNKELEKLAYEYQLLQAQAQLLAQNLELLNLARAEVQTVKETLENLKKIEEEKPEIL 60
           MAQ+NKELEKLAYEYQ+LQAQAQ+LAQNLELLNLA+AEVQTV+ETLENLKKIEEEKPEIL
Sbjct: 4   MAQNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEIL 63

Query: 61  VPIGAGSFLKGIIVDKNNAIVSVGSGYAVERSVDDAISFLEKRLNEYDDAIKKTQQALTE 120
           VPIGAGSFLKG+IVDKNNAIVSVGSGYAVERS+D+AISFLEKRL EYD+AIKKTQ AL E
Sbjct: 64  VPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAE 123

Query: 121 LEKRLGDVAKKAQEIQQKQAMGSFKVKK 148
           LEKR+G+VA+KAQE+QQKQ+M SFKVKK
Sbjct: 124 LEKRIGEVARKAQEVQQKQSMTSFKVKK 151


>pir||H69081 conserved hypothetical protein MTH1609 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622734|gb|AAB86082.1| (AE000920) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 141
           
 Score = 78.8 bits (191), Expect = 2e-14
 Identities = 36/136 (26%), Positives = 86/136 (62%), Gaps = 2/136 (1%)

Query: 3   QSNKELEKLAYEYQLLQAQAQLLAQNLELLNLARAEVQTVKETLENLKKIEEEKPEILVP 62
           +  + LE++  +  + Q+Q +L+ Q +E +    +E++ +++TL +++   ++  E LVP
Sbjct: 2   EDQQRLEEIVNQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVP 59

Query: 63  IGAGSFLKGIIVDKNNAIVSVGSGYAVERSVDDAISFLEKRLNEYDDAIKKTQQALTELE 122
           +GAGSF+K  + D +  I+SVG+G A++++ +DA+  ++ + NE +  ++K  + L ++ 
Sbjct: 60  VGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRKIT 119

Query: 123 KRLGDVAKKAQEIQQK 138
             +  ++ +A+E+ +K
Sbjct: 120 DIMMKLSPQAEELLKK 135


>sp|Q58362|Y952_METJA HYPOTHETICAL PROTEIN MJ0952 >gi|2129075|pir||H64418 hypothetical
           protein YML094w homolog - Methanococcus jannaschii
           >gi|1592316|gb|AAB98957.1| (U67539) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 142
           
 Score = 67.9 bits (163), Expect = 5e-11
 Identities = 45/146 (30%), Positives = 78/146 (52%), Gaps = 12/146 (8%)

Query: 1   MAQSNKELEKLAYEYQLLQAQAQLLAQNLELLNLARAEVQTVKETLENLKKIEEEKPEIL 60
           M    ++L + A   ++   Q Q++   +  +   ++E+    +T+EN+K  E    E L
Sbjct: 1   MENMAEDLRQKAMALEIYNQQLQMIQSEITSIRALKSEIMNSIKTIENIKADE----ETL 56

Query: 61  VPIGAGSFLKGIIVDKNNAIVSVGSGYAVERSVDDAISFLEKRLNEYDDA----IKKTQQ 116
           +P+G G FLK  IVD + A++ V S   VE+S ++ I  L+K + + D A    +KK ++
Sbjct: 57  IPVGPGVFLKAKIVD-DKALIGVKSDIYVEKSFNEVIEDLKKSVEDLDKAEKEGMKKAEE 115

Query: 117 ---ALTELEKRLGDVAKKAQEIQQKQ 139
              A+T L K L    +KAQ+ Q K+
Sbjct: 116 LAKAITALRKELQTEIQKAQQAQDKK 141


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.310    0.129    0.321 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44532142
Number of Sequences: 2977
Number of extensions: 1677639
Number of successful extensions: 12901
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12896
Number of HSP's gapped (non-prelim): 4
length of query: 148
length of database: 189,106,746
effective HSP length: 65
effective length of query: 83
effective length of database: 150,205,091
effective search space: 12467022553
effective search space used: 12467022553
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 161 (67.1 bits)