BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1010 (PAB1010) DE:Hypothetical protein
(253 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75067 hypothetical protein PAB1010 - Pyrococcus abyssi (st... 493 e-139
pir||A71165 hypothetical protein PH0518 - Pyrococcus horikoshii ... 404 e-112
dbj|BAB07173.1| (AP001518) unknown conserved protein [Bacillus h... 138 9e-32
pir||A75507 conserved hypothetical protein - Deinococcus radiodu... 134 1e-30
pir||H69217 hypothetical protein MTH882 - Methanobacterium therm... 118 5e-26
pir||H70015 hypothetical protein yunE - Bacillus subtilis >gi|26... 113 2e-24
pir||B83602 conserved hypothetical protein PA0340 [imported] - P... 110 2e-23
gb|AAK42433.1| Membrane conserved hypothetical protein [Sulfolob... 108 1e-22
emb|CAC11558.1| (AL445064) conserved hypothetical membrane prote... 106 2e-22
pir||E72774 hypothetical protein APE0183 - Aeropyrum pernix (str... 105 6e-22
pir||H81844 conserved hypothetical integral membrane protein NMA... 104 1e-21
pir||F81376 probable integral membrane protein Cj0343c [imported... 103 2e-21
gb|AAK40382.1| Conserved hypothetical protein [Sulfolobus solfat... 103 2e-21
sp|P44070|Y902_HAEIN HYPOTHETICAL PROTEIN HI0902 >gi|1074554|pir... 100 3e-20
sp|Q57883|Y441_METJA HYPOTHETICAL PROTEIN MJ0441 >gi|2127986|pir... 99 4e-20
pir||H83213 hypothetical protein PA3457 [imported] - Pseudomonas... 99 4e-20
pir||A82295 conserved hypothetical protein VC0673 [imported] - V... 98 8e-20
pir||F69783 conserved hypothetical protein ydhB - Bacillus subti... 98 8e-20
sp|P54437|YRKJ_BACSU HYPOTHETICAL 27.6 KD PROTEIN IN BLTR-SPOIII... 97 2e-19
emb|CAC11726.1| (AL445064) conserved hypothetical membrane prote... 97 2e-19
pir||F81096 conserved hypothetical protein NMB1319 [imported] - ... 94 2e-18
gb|AAD10707.1| (AF047001) unknown [Oenococcus oeni temperate bac... 91 1e-17
pir||B83290 conserved hypothetical protein PA2847 [imported] - P... 90 2e-17
emb|CAC12114.1| (AL445066) conserved hypothetical membrane prote... 90 2e-17
gi|11497741 conserved hypothetical transmembrane protein [Archae... 89 4e-17
pir||D71910 hypothetical protein jhp0619 - Helicobacter pylori (... 88 9e-17
emb|CAB62748.1| (AL133424) putative membrane protein [Streptomyc... 88 9e-17
gi|11499156 conserved hypothetical protein [Archaeoglobus fulgid... 88 1e-16
pir||E64604 conserved hypothetical integral membrane protein HP0... 87 3e-16
pir||T44070 conserved hypothetical protein [imported] - Staphylo... 86 5e-16
dbj|BAA94322.1| (AB033763) hypothetical protein [Staphylococcus ... 83 2e-15
emb|CAC12235.1| (AL445066) conserved hypothetical membrane prote... 82 9e-15
pir||B64548 conserved hypothetical integral membrane protein HP0... 79 5e-14
pir||A82766 membrane protein XF0764 [imported] - Xylella fastidi... 77 2e-13
dbj|BAB05177.1| (AP001512) unknown conserved protein [Bacillus h... 77 2e-13
pir||F71960 hypothetical protein jhp0211 - Helicobacter pylori (... 77 2e-13
pir||B81200 conserved hypothetical protein NMB0432 [imported] - ... 76 3e-13
pir||C71006 hypothetical protein PH1345 - Pyrococcus horikoshii ... 76 4e-13
emb|CAB61305.1| (AL132991) hypothetical protein SCF55.35 [Strept... 76 5e-13
pir||A81776 conserved hypothetical integral membrane protein NMA... 76 5e-13
gi|11499120 conserved hypothetical protein [Archaeoglobus fulgid... 75 7e-13
gi|11499224 conserved hypothetical protein [Archaeoglobus fulgid... 74 2e-12
sp|P29942|YCB9_PSEDE HYPOTHETICAL 27.4 KD PROTEIN IN COBO 3'REGI... 73 3e-12
pir||D75343 conserved hypothetical protein - Deinococcus radiodu... 73 4e-12
pir||E83546 hypothetical protein PA0790 [imported] - Pseudomonas... 71 1e-11
sp|P44054|Y806_HAEIN HYPOTHETICAL PROTEIN HI0806 >gi|1074517|pir... 70 3e-11
pir||F72385 conserved hypothetical protein - Thermotoga maritima... 69 4e-11
pir||T44107 conserved hypothetical protein [imported] - Staphylo... 69 5e-11
pir||B83419 conserved hypothetical protein PA1824 [imported] - P... 69 5e-11
>pir||F75067 hypothetical protein PAB1010 - Pyrococcus abyssi (strain Orsay)
>gi|5458948|emb|CAB50435.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 253
Score = 493 bits (1256), Expect = e-139
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MIDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALS 60
MIDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALS
Sbjct: 1 MIDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALS 60
Query: 61 SSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRG 120
SSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRG
Sbjct: 61 SSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRG 120
Query: 121 KRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAI 180
KRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAI
Sbjct: 121 KRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAI 180
Query: 181 VFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILA 240
VFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILA
Sbjct: 181 VFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILA 240
Query: 241 IRMILKGLGYSVP 253
IRMILKGLGYSVP
Sbjct: 241 IRMILKGLGYSVP 253
>pir||A71165 hypothetical protein PH0518 - Pyrococcus horikoshii
>gi|3256923|dbj|BAA29606.1| (AP000002) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 404 bits (1026), Expect = e-112
Identities = 198/249 (79%), Positives = 225/249 (89%), Gaps = 1/249 (0%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
+LLK+ +TG++TGTLAAMFGLGGGFLLVP LN++GVEIHHA+GTSSASIIFTALSSSYAY
Sbjct: 4 LLLKSLITGLITGTLAAMFGLGGGFLLVPTLNILGVEIHHAIGTSSASIIFTALSSSYAY 63
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGER 125
++QK+I Y +GI LASTAV+GAY+GAW+TS ISP KLKVIFG+TLIFVAYRM + K E
Sbjct: 64 YKQKKIYYDIGIALASTAVIGAYIGAWLTSIISPSKLKVIFGITLIFVAYRMIKKKPAEE 123
Query: 126 -REEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIVFTS 184
+E++ K VPIGGFFSG+ SGLLGVGGGIINVP LTWLGVPIH AVATSSFAI+FTS
Sbjct: 124 VKEKVRERRKWVPIGGFFSGVLSGLLGVGGGIINVPFLTWLGVPIHNAVATSSFAIIFTS 183
Query: 185 TSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRMI 244
TSSAIKHY LGNVELYWLPLLVPGLI+GAQIGARIAK+TKA SL+ GFA+VMLILAIRMI
Sbjct: 184 TSSAIKHYLLGNVELYWLPLLVPGLIVGAQIGARIAKKTKARSLKNGFAIVMLILAIRMI 243
Query: 245 LKGLGYSVP 253
LKGLGY+VP
Sbjct: 244 LKGLGYNVP 252
>dbj|BAB07173.1| (AP001518) unknown conserved protein [Bacillus halodurans]
Length = 273
Score = 138 bits (343), Expect = 9e-32
Identities = 86/261 (32%), Positives = 140/261 (52%), Gaps = 27/261 (10%)
Query: 14 GVVTGTLAAMFGLGGGFLLVPILNLMG--------VEIHHAVGTSSASIIFTALSSSYAY 65
G++ GT+ ++ GLGGG ++VP L +G V AVGTS +IFT LSS++AY
Sbjct: 10 GLLAGTIGSLMGLGGGIIVVPALLWLGGTALLSEAVTPQVAVGTSLLIMIFTGLSSTFAY 69
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRG----- 120
++ + Y+ G++ + GA +G W+ + + ++ FG+ +I +++ +
Sbjct: 70 MKKGTVDYKSGLIFFIGSGPGALVGVWLNQGLQVQQFQIYFGLFVILMSFLLMIRHRLKP 129
Query: 121 ----KRGERREEISVNEKLVPIG---------GFFSGIASGLLGVGGGIINVPLLTWL-G 166
K+G RR + + G FF G+ SGL G+GGG + VP + L
Sbjct: 130 MEIKKKGIRRVYVDPEGQRYDYGFQAWLGILIAFFVGLLSGLFGIGGGTLLVPAMILLFA 189
Query: 167 VPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKAS 226
P H AVATS F I+FT+ S++ H LGNV + LVPG IGA++GA + R K+
Sbjct: 190 FPPHVAVATSMFMIIFTALLSSLSHLALGNVNWLFAAGLVPGAWIGAKLGAILNTRLKSD 249
Query: 227 SLRKGFAVVMLILAIRMILKG 247
++ F + +L + +R+I +G
Sbjct: 250 TIVFVFRLFLLFVGLRLIYEG 270
>pir||A75507 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458232|gb|AAF10119.1|AE001912_4 (AE001912)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 255
Score = 134 bits (334), Expect = 1e-30
Identities = 81/256 (31%), Positives = 143/256 (55%), Gaps = 11/256 (4%)
Query: 4 TAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLM------GVEIHHAVGTSSASIIFT 57
+A++L G++ G L A+ GLGGG ++VP L + + I AV S ++
Sbjct: 3 SAMMLAVIGVGLLAGVLGAILGLGGGVVVVPALEFVLPRFGHDITISQAVAVSQIGVLAV 62
Query: 58 ALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRM 117
LS + AY +Q + R G LL+ ++G +G+++ + + +F + L + AY +
Sbjct: 63 GLSGAAAYLQQGLVRARTGYLLSPYTIIGGAVGSFLGLVLPARAVATVFALLLFYSAYNL 122
Query: 118 FRG-KRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWL-GVPIHYAVAT 175
RG KR E E S KLVP F+G+ SGLLG+GGG + VP+L + G+PI A+AT
Sbjct: 123 LRGLKRVEVEREPS---KLVPPAMTFAGVMSGLLGIGGGTVQVPVLNLMQGMPIRQAIAT 179
Query: 176 SSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVV 235
S+F + T+ +A+ + G +++ + G++IGA+ GA + R A+ L+ F+++
Sbjct: 180 STFIMGLTAVGNALVYQAGGLLDVKLAAGVALGVLIGAKAGASLQSRIPAAQLKLFFSLL 239
Query: 236 MLILAIRMILKGLGYS 251
++ A +++ K G++
Sbjct: 240 LIFTAGQLLWKYWGHA 255
>pir||H69217 hypothetical protein MTH882 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621976|gb|AAB85380.1| (AE000864)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 261
Score = 118 bits (294), Expect = 5e-26
Identities = 84/266 (31%), Positives = 136/266 (50%), Gaps = 29/266 (10%)
Query: 2 IDTAILLKAFV-TGVVTGTLAAMFGLGGGFLLVPILNLM--------GVEIHHAVGTSSA 52
+D I + A + TG++ G + G+GGGF++ P+L + + I A GTS A
Sbjct: 3 MDPLIYVAALLFTGLLAGLATGLLGVGGGFIIAPVLFFLMEAGGTPPDIAIRTAFGTSLA 62
Query: 53 SIIFTALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIF 112
I+ TALS +++++R+K + R+GI + G+ G + S L+ FGV LI
Sbjct: 63 IILPTALSGAHSHYRRKCVDSRIGITMGVLGACGSVAGVFTASASPAYVLRAFFGVLLIL 122
Query: 113 VAYRMFRGKRGERREEISVN----EKLVPIGGFFSGIASGLLGVGGGIINVPLLTWL-GV 167
V+ ++ R IS + P+ GF +G SGLLG+GGG++ VPLL + G
Sbjct: 123 VSAQLLLSSR------ISPSGFGRNAAFPL-GFLAGFLSGLLGIGGGVVLVPLLVMVAGF 175
Query: 168 PIHYAVATSSFAIVFTSTSSAIKHYF--------LGNVELYWLPLLVPGLIIGAQIGARI 219
+ AV TSS I FT+ S I + F +G V L L++ + +++GA I
Sbjct: 176 DVLEAVGTSSLVIAFTAASGTISYIFTGPGGPFTVGYVNLLQFLLVIVMSVPSSRLGALI 235
Query: 220 AKRTKASSLRKGFAVVMLILAIRMIL 245
A R +R F +++L ++M+L
Sbjct: 236 AHRVDVRYIRYIFIILLLFTGLKMLL 261
>pir||H70015 hypothetical protein yunE - Bacillus subtilis
>gi|2635735|emb|CAB15228.1| (Z99120) yunE [Bacillus
subtilis]
Length = 273
Score = 113 bits (280), Expect = 2e-24
Identities = 75/265 (28%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 12 VTGVVTGTLAAMFGLGGGFLLVPILNLMG--------VEIHHAVGTSSASIIFTALSSSY 63
V G++ GT+ ++ GLGGG ++VP L + V A+GTS IIFT LSS+
Sbjct: 8 VLGLIAGTVGSLIGLGGGIVIVPSLMFLSTVTQLFQDVTPQVAIGTSLLVIIFTGLSSTL 67
Query: 64 AYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAY-------- 115
AY + K + Y+ G++ + G+ +GA+++ + V FG+ +I ++
Sbjct: 68 AYIKYKTVDYKSGLIFFIGSGPGSMIGAYVSKLFNSNSFSVWFGIFMILISLSLMLKAKA 127
Query: 116 -----------RMFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTW 164
R F+ GE S + F G GL G+GGG + VP +
Sbjct: 128 RPINKAHKGIIRTFQDDAGEPYT-YSYQASVGIAIAFVVGFLGGLFGIGGGSLMVPAMML 186
Query: 165 LGV-PIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRT 223
L + P AVATS F I +S + ++ H G+V + LVPG G ++GA I ++
Sbjct: 187 LFLFPPKVAVATSMFIIFLSSMTGSVSHMISGHVNWLYALALVPGAWFGGKLGAAINRKM 246
Query: 224 KASSLRKGFAVVMLILAIRMILKGL 248
+ ++ +V++++ ++I +G+
Sbjct: 247 QTKTIVMIMRIVLILIGCQLIYEGI 271
>pir||B83602 conserved hypothetical protein PA0340 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946189|gb|AAG03729.1|AE004472_1 (AE004472)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 267
Score = 110 bits (272), Expect = 2e-23
Identities = 80/259 (30%), Positives = 128/259 (48%), Gaps = 21/259 (8%)
Query: 12 VTGVVTGTLAAMFGLGGGFLLVPILNLM--------GVEIHHAVGTSSASIIFTALSSSY 63
V G G LA +FG+GGG ++VP L V AVGTS A+I+FT+++S
Sbjct: 8 VLGACAGVLAGLFGVGGGLIIVPALVFSFTAHGFGGDVLTQMAVGTSLATIVFTSINSIL 67
Query: 64 AYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRG 123
+HR+ + + V + ++G+ LGA + I L+ I GV I VA +M +
Sbjct: 68 EHHRRGAVRWPVFAWMTLGILIGSALGALTAAQIKGPLLQKIIGVFAILVALQMVLDLKP 127
Query: 124 ERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIVFT 183
+ E+ L + G G AS + G+GGG + VP L+W VP+ AVATSS +
Sbjct: 128 KGSREVPGKGGLT-LAGAVIGWASAIFGIGGGSLTVPFLSWRSVPMQQAVATSSACGLPI 186
Query: 184 STSSAIKHYFLG---------NVELYWLPLLV---PGLIIGAQIGARIAKRTKASSLRKG 231
+ S A+ +G ++ +LP LV ++ A+ GAR+A R L++
Sbjct: 187 AISGALSFIAVGWHNPQLPEWSLGYVYLPALVGIAATSMLFARFGARLAHRLSPRVLKRL 246
Query: 232 FAVVMLILAIRMILKGLGY 250
FA+++ + I + L +
Sbjct: 247 FALLLFSVGISFLTPDLAF 265
>gb|AAK42433.1| Membrane conserved hypothetical protein [Sulfolobus solfataricus]
Length = 293
Score = 108 bits (266), Expect = 1e-22
Identities = 75/261 (28%), Positives = 132/261 (49%), Gaps = 28/261 (10%)
Query: 8 LKAFVTGVVTGTLAAMFGLGGGFLLVPIL-NLMGVE-------------IHHAVGTSSAS 53
L + ++G++ G + G GG L +P+L +G+ H +GT++ +
Sbjct: 17 LLSIISGILVGFSLGLIGGGGSILAIPLLLYFVGLANGIPPGSPEYTYITHLTLGTTALA 76
Query: 54 IIFTALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFV 113
+ + +SY + R+ + GI+ V+G +GA+++ +S + +FG +I V
Sbjct: 77 VGLNSYINSYMHFRRGNVRVPEGIIFTIPGVIGDVIGAYLSHLMSGALILFLFGFLMIAV 136
Query: 114 AYRMFRGKRGERR-------EEISVNE-----KLVPIGGFFSGIASGLLGVGGGIINVP- 160
A RM+R K R ++S+ E K++P GF G ASG G+GGG + VP
Sbjct: 137 AIRMWRSKCNPNRSVLYNNSHKLSLRERIKVTKVIP-AGFLVGFASGYFGIGGGFLVVPG 195
Query: 161 LLTWLGVPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIA 220
LL G+ + AV TS A+ ++AI + G V++ L + G ++G G+ IA
Sbjct: 196 LLFSTGLDMLRAVGTSLIAVGTFGVTAAITYAVYGYVDIVISLLYLLGGVVGGYTGSTIA 255
Query: 221 KRTKASSLRKGFAVVMLILAI 241
R +LRK FA++++++AI
Sbjct: 256 SRMPRQTLRKLFAIIIIVVAI 276
>emb|CAC11558.1| (AL445064) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 331
Score = 106 bits (263), Expect = 2e-22
Identities = 84/281 (29%), Positives = 137/281 (47%), Gaps = 34/281 (12%)
Query: 1 MIDTAILLKAFVTGV-VTGTLAAMFGLGGGFLLVPILNLM-GVEIHHAVGTSSASIIFTA 58
+I+ + + V G + G + ++ GLGGG +LVP+L L G+ I +A G S S I T+
Sbjct: 9 LIEIIVRFLSIVAGAFIAGLIGSLTGLGGGTVLVPVLTLFYGIPIIYATGASLISTIATS 68
Query: 59 LSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLK----VIFGVTLI-FV 113
S+ AY ++K R+G+ L GA +G+ FI L VIFG L+ +
Sbjct: 69 AGSASAYAKEKIANIRLGVGLEVATTTGAIVGSLTAVFIYDHHLSWLIYVIFGFVLLGSL 128
Query: 114 AYRMFRGK-------------------------RGERREEIS-VNEKLVPIGGFFSGIAS 147
+ RGK R + E S V L I FF+G+ S
Sbjct: 129 VPTIQRGKYEIPKMLKPDWTTRVFQLSGSYYDARLHKNVEYSGVRWWLGEIIMFFAGMIS 188
Query: 148 GLLGVGGGIINVPLLTW-LGVPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLV 206
GLLG+G G + V + W + +P+ +S+F I T+ + + +++ G ++ +
Sbjct: 189 GLLGIGSGALKVLGMDWAINLPMKVTTTSSNFMIGITAATGSSIYWYAGYIQPFIAAATA 248
Query: 207 PGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRMILKG 247
G++IGA +GA+I R S+R F +++ L I+M+LKG
Sbjct: 249 IGVLIGAFLGAKILVRITNRSIRWIFFAILMFLGIQMVLKG 289
>pir||E72774 hypothetical protein APE0183 - Aeropyrum pernix (strain K1)
>gi|5103574|dbj|BAA79095.1| (AP000058) 270aa long
hypothetical protein [Aeropyrum pernix]
Length = 270
Score = 105 bits (259), Expect = 6e-22
Identities = 76/246 (30%), Positives = 124/246 (49%), Gaps = 15/246 (6%)
Query: 14 GVVTGTLAAMFGLGGGFLLVPI-LNLMGVEIHHAVGTSSASIIFTALSSSYAYHRQKRIL 72
GV LA++ G+GGG VPI L ++G+ + AVG+S + ++ S Y RQ
Sbjct: 24 GVAAAALASLSGVGGGVFFVPIFLFIVGLPPNIAVGSSKVVVAIVSIVSGLTYLRQGTTR 83
Query: 73 YRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMF--RGKRGERREEIS 130
L + + GA LGA++ ++I P L+VI G+ + + + R+ ++ RE
Sbjct: 84 LSRAAPLMVSMIPGAALGAYLVAYIDPRLLEVILGLFITYYSLRLLLVTARKALAREAKP 143
Query: 131 VNEK-----------LVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVP-IHYAVATSSF 178
V E+ L+ G +G+ +GL G GGG I VP+LT L + + AVA S
Sbjct: 144 VEEEGSRGPRPGGRYLMLATGVAAGLFAGLTGTGGGAILVPMLTLLRIAKLKEAVAISML 203
Query: 179 AIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLI 238
+I + SA H + G V+ G +IG+ +G A R +LR A+V+L+
Sbjct: 204 SISLGAVVSAAIHVWTGVVDFGGAAPFALGALIGSILGPMAASRLSTDALRPIVALVLLL 263
Query: 239 LAIRMI 244
+A+R++
Sbjct: 264 VALRLL 269
>pir||H81844 conserved hypothetical integral membrane protein NMA1533 [imported]
- Neisseria meningitidis (group A strain Z2491)
>gi|7380174|emb|CAB84760.1| (AL162756) conserved
hypothetical integral membrane protein [Neisseria
meningitidis Z2491]
Length = 268
Score = 104 bits (257), Expect = 1e-21
Identities = 75/261 (28%), Positives = 123/261 (46%), Gaps = 24/261 (9%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPI----LNLMGVEIHH-----AVGTSSASIIF 56
I+L G G +A +FG+GGG L+VP+ L+L G+ H AVGTS A ++F
Sbjct: 6 IILILLAVGSAAGFIAGLFGVGGGTLIVPVVLWVLDLQGLAQHPYAQHLAVGTSFAVMVF 65
Query: 57 TALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYR 116
TA SS H+++ + ++ + V G + GA +I L++ F + L VA++
Sbjct: 66 TAFSSMLGQHKKQAVDWKTVFTMMPGMVFGVFAGALSAKYIPAFGLQIFFILFLTAVAFK 125
Query: 117 MFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATS 176
+ L + F G S +G+GGG ++VP L G P H A+ TS
Sbjct: 126 TLHTDPQTASRPLPGLPGLTAVSTLF-GTMSSWVGIGGGSLSVPFLIHCGFPAHKAIGTS 184
Query: 177 SFAIVFTSTSSAIKHYFLGNVELYWLP-------------LLVPGLIIGAQIGARIAKRT 223
S + S AI Y L + + LP +L I A +G + A +
Sbjct: 185 SGLAWPIALSGAIS-YLLNGLNIAGLPEGSLGFLYLPAVAVLSAATIAFAPLGVKTAHKL 243
Query: 224 KASSLRKGFAVVMLILAIRMI 244
++ L+K F +++L++A +M+
Sbjct: 244 SSAKLKKSFGIMLLLIAGKML 264
>pir||F81376 probable integral membrane protein Cj0343c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967818|emb|CAB74180.1| (AL139075) putative integral
membrane protein [Campylobacter jejuni]
Length = 261
Score = 103 bits (254), Expect = 2e-21
Identities = 68/244 (27%), Positives = 126/244 (50%), Gaps = 10/244 (4%)
Query: 8 LKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAYHR 67
L + G+++G + +FG+GGG ++VP + +G HHA+G S +IF A+ SY ++
Sbjct: 6 LPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHAIGISVLQMIFAAVFGSYINYK 65
Query: 68 QKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIF-GVTLIFVAYRMFRGKRG--E 124
+K + + GI++ ++GA + +S L +F V+ IF F K +
Sbjct: 66 KKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTSVFLAVSCIFFIKYAFGIKENIVQ 125
Query: 125 RREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTW-LGVPIHYAVATSSFAIVFT 183
+ + V ++ I G F+GI + LG+GGG++ P+L + LG V+ S F ++F
Sbjct: 126 NQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIAPILAYFLGYDSKKVVSLSLFFVIFA 185
Query: 184 STSSAIKHYFLGNV--ELYWLPLLVP-GLIIGAQIGARIAKRTKASSLRKGFAVVMLILA 240
S S I G + E+ +LV ++G IG +I ++ S+ RK +++ + A
Sbjct: 186 SVSGIISFSNSGVIDSEVIHKGILVGIASMVGVFIGIKIIEKMHISAHRK---ILLCVYA 242
Query: 241 IRMI 244
+ ++
Sbjct: 243 LSIL 246
>gb|AAK40382.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 286
Score = 103 bits (254), Expect = 2e-21
Identities = 78/282 (27%), Positives = 135/282 (47%), Gaps = 37/282 (13%)
Query: 8 LKAFVTGVV----TGTLAAMFGLGGGFLLVPILNL-MGVEIHHAVGTSSASIIFTALSSS 62
++ FVT V+ +G L A+ GLGG LVPI L + V I +A G S S I T+ ++
Sbjct: 5 IEFFVTVVLISALSGILGALTGLGGATFLVPIYTLYLNVPIAYASGASLISTIATSSGAA 64
Query: 63 YAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLK----VIFGVTLIFVAYRMF 118
AY + + ++G+ L G+ GA ++I L+ ++FG+ L+ Y
Sbjct: 65 SAYVKDRITNVKIGMGLEIATTTGSIAGALTVAYIYAHHLEFIVYIVFGIVLLSQVYVQL 124
Query: 119 RGKRGERREEI-----------------SVNEKLVPIGG----------FFSGIASGLLG 151
+ E + I +V ++ V G FF+G SGLLG
Sbjct: 125 AKSKFELPKPIKPDWTTRVFELYGKYYDTVLKQEVEYHGVRWWLGEIIMFFAGFISGLLG 184
Query: 152 VGGGIINVPLLTW-LGVPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLI 210
+G G + V + W + +P+ + TS+F I T+ + + ++ G ++ + G++
Sbjct: 185 IGSGALKVLGMDWAMNLPMKVSTTTSNFMIGVTAATGSSIYWIFGYIQPFLAAGTALGVL 244
Query: 211 IGAQIGARIAKRTKASSLRKGFAVVMLILAIRMILKGLGYSV 252
IGA +G +I R ++R F +++ L I+MIL+G GY +
Sbjct: 245 IGAFVGTKILVRVTNKTIRYIFTAILIFLGIQMILRGFGYGL 286
>sp|P44070|Y902_HAEIN HYPOTHETICAL PROTEIN HI0902 >gi|1074554|pir||G64015 hypothetical
protein HI0902 - Haemophilus influenzae (strain Rd KW20)
>gi|1573922|gb|AAC22562.1| (U32772) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 264
Score = 99.8 bits (245), Expect = 3e-20
Identities = 68/260 (26%), Positives = 125/260 (47%), Gaps = 20/260 (7%)
Query: 7 LLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLM--------GVEIHHAVGTSSASIIFTA 58
+L + G + G LA +FG+GGG ++VP L + + + A+GTS A+I+ T
Sbjct: 5 ILLCLLVGALAGFLAGLFGIGGGLVIVPTLVYLLPIVDVPESLLMSTALGTSFATIVITG 64
Query: 59 LSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMF 118
+ S+ +H+ I+++ +LA ++ ++ + IF ++++A +M
Sbjct: 65 IGSAQRHHKLGNIVWQAVRILAPVIMLSVFICGLFIGRLDREISAKIFACLVVYLATKMV 124
Query: 119 RGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSF 178
+ ++ S+ IGG G+AS G+GGG VP LT G+ I A+ +S+F
Sbjct: 125 LSIKKDQVTTKSLTPLSSVIGGILIGMASSAAGIGGGGFIVPFLTARGINIKQAIGSSAF 184
Query: 179 A------------IVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKAS 226
IV + + Y LG + L + + +++GA + S
Sbjct: 185 CGMLLGISGMFSFIVSGWGNPLMPEYSLGYIYLPAVLGITATSFFTSKLGASATAKLPVS 244
Query: 227 SLRKGFAVVMLILAIRMILK 246
+L+KGFA+ ++++AI M LK
Sbjct: 245 TLKKGFALFLIVVAINMFLK 264
>sp|Q57883|Y441_METJA HYPOTHETICAL PROTEIN MJ0441 >gi|2127986|pir||A64355 hypothetical
protein HI0902 homolog - Methanococcus jannaschii
>gi|1591145|gb|AAB98428.1| (U67495) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 267
Score = 99.5 bits (244), Expect = 4e-20
Identities = 72/253 (28%), Positives = 127/253 (49%), Gaps = 22/253 (8%)
Query: 12 VTGVVTGTLAAMFGLGGGFLLVPILNLM----GVE--IHHAVGTSSASIIFTALSSSYAY 65
+ G + G L ++FG+GGGFL+ PIL + G+ + AVGTS + ++ S + +
Sbjct: 18 IVGFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRH 77
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMT-SFISPGKLKVIFGVTLIFVAYRMFRGKRGE 124
+ K I ++ I + ++V +Y ++ +FI LK +FG+ LI A M +
Sbjct: 78 AKIKNINWKASITIGIISLVFSYFSGFLVVNFIDSAILKKLFGIFLIANAIYM---AKSH 134
Query: 125 RREEISVNE-KLVP--IGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIV 181
++IS E KL P + G +G SGL G+GGGI+ +P+L P+ AVA S I
Sbjct: 135 HIDKISDREDKLEPFILCGVITGFLSGLFGIGGGIVIIPILAMAKYPVKRAVAISVGVIP 194
Query: 182 FTSTSSAIKH---------YFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGF 232
TS I + Y +G V + ++ +I +++G +I ++ LR
Sbjct: 195 LTSIGGLISYLTANTEGYIYNIGYVSIPIALIMAIPIIYSSKLGIKINQKISPKHLRIML 254
Query: 233 AVVMLILAIRMIL 245
+ ++ ++ + M+L
Sbjct: 255 SSILGVMGLFMLL 267
>pir||H83213 hypothetical protein PA3457 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949599|gb|AAG06845.1|AE004766_6
(AE004766) hypothetical protein [Pseudomonas aeruginosa]
Length = 250
Score = 99.5 bits (244), Expect = 4e-20
Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 3/245 (1%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
+L ++ G + G L + G GG + +P+L + + + A+G S ++ +AL +
Sbjct: 4 LLFESLGIGAILGLLLGLTGAGGSLVALPLLLSLHLPLRDAIGVSLGAVALSALIGAIPR 63
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGER 125
RQ ++ +R ++LA + +G W+ F+ G L V F + +++ A+RM+RG G +
Sbjct: 64 ARQGQVAWRPVLVLALAGLPSNAVGQWLGRFVPEGVLIVAFCLLVLWSAWRMWRG-AGMK 122
Query: 126 REEISVNEKLVPIG-GFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIVFTS 184
RE L +G G G+ SGL+GVGGG + VP L W A +S A++
Sbjct: 123 REASDQARSLPLLGIGLAVGLLSGLMGVGGGFLVVPGLLWFTPLSMMAATATSMAVIALV 182
Query: 185 TSSAIKHYFLG-NVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRM 243
+ Y G + L L L G +G G +A+R +L++ FA++++ ++ +
Sbjct: 183 SGGGFLIYLTGAHPPLPLLGGLAAGGAVGVLGGNLLAQRLGGPTLQRLFALMLVAVSFSL 242
Query: 244 ILKGL 248
+ L
Sbjct: 243 AAQKL 247
>pir||A82295 conserved hypothetical protein VC0673 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655111|gb|AAF93838.1|
(AE004153) conserved hypothetical protein [Vibrio
cholerae]
Length = 264
Score = 98.3 bits (241), Expect = 8e-20
Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 24/262 (9%)
Query: 5 AILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLM--------GVEIHHAVGTSSASIIF 56
AILL + G V G LA + G+GGG L+VP L + + + A+ TS A+II
Sbjct: 7 AILL---LLGAVVGVLAGLLGIGGGLLVVPALLFLLPYAGISTEIVMQLALATSLATIIL 63
Query: 57 TALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYR 116
T+ SS+ + + + V L VVG +LG+ + +I L +FGV ++ ++ +
Sbjct: 64 TSGSSALNHLKLGNVDVFVVKWLMPGVVVGGFLGSVVAEWIPSQYLPKVFGVIVLCLSVQ 123
Query: 117 MFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATS 176
M+R R + + + + + G G+ S L G+GGG ++VP L G+ + A+ +S
Sbjct: 124 MYRSIRALQNHPMP-SAWITTLCGTGIGVISSLAGIGGGSLSVPFLNRHGIEMKKAIGSS 182
Query: 177 S---FAIVFTSTSSAIKH---------YFLGNVELYWLPLLVPGLIIGAQIGARIAKRTK 224
S FAI + I H Y LG V L L + ++ +IGA++A +
Sbjct: 183 SVCGFAIAISGMIGFILHGYQVENLPQYSLGYVYLPALLAIATTSMLTTRIGAKLATQMP 242
Query: 225 ASSLRKGFAVVMLILAIRMILK 246
+ L++ FA+ ++ +A+ M+ +
Sbjct: 243 TARLKRFFAIFLMCVAVTMLFQ 264
>pir||F69783 conserved hypothetical protein ydhB - Bacillus subtilis
>gi|1945085|dbj|BAA19693.1| (D88802) transmembrane
[Bacillus subtilis] >gi|2632882|emb|CAB12388.1| (Z99107)
similar to hypothetical proteins [Bacillus subtilis]
Length = 259
Score = 98.3 bits (241), Expect = 8e-20
Identities = 63/220 (28%), Positives = 113/220 (50%), Gaps = 11/220 (5%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
I+L F+ G++ G + A G GF++ + L + IH A+GTS A + FT+LS +Y++
Sbjct: 3 IILVMFLLGIILGFIGAG---GAGFVIALLTLLFHIPIHTALGTSLAGMAFTSLSGAYSH 59
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKL------KVIFGVTLIFVAYRMFR 119
+R+ I ++G+++ A VG++ GA +TSFI L + LI + + +
Sbjct: 60 YREGNIQMKIGLIVGGFAAVGSFFGAKLTSFIPADLLHYLTAGMLFLSAILILIRLFILK 119
Query: 120 GKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGG-IINVPLLTWLGVPIHYAVATSSF 178
K + +S + V I G +G+ SG G+G I + L+ L + I ++V T+
Sbjct: 120 EKAQVNQSTLSTYTRAV-ILGIAAGVLSGTFGIGSAPFIQIGLMIMLNLSIRHSVGTTML 178
Query: 179 AIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGAR 218
I+ + I + G V+ L ++ G + GA +GA+
Sbjct: 179 VIIPLAVGGGIGYITEGFVDYVLLVKVLVGTMCGAYVGAK 218
>sp|P54437|YRKJ_BACSU HYPOTHETICAL 27.6 KD PROTEIN IN BLTR-SPOIIIC INTERGENIC REGION
>gi|7475357|pir||H69976 hypothetical protein yrkJ -
Bacillus subtilis >gi|1303709|dbj|BAA12365.1| (D84432)
YrkJ [Bacillus subtilis] >gi|2635094|emb|CAB14590.1|
(Z99117) yrkJ [Bacillus subtilis]
Length = 261
Score = 96.7 bits (237), Expect = 2e-19
Identities = 70/260 (26%), Positives = 124/260 (46%), Gaps = 16/260 (6%)
Query: 2 IDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPIL-------NLMGVEIHHAVGTSSASI 54
+D A + F+ G + ++ M G+GG + P+L +M + H G + +
Sbjct: 1 MDIAFITTLFIIGFIGAFISGMIGIGGAVINYPMLLYIPSLVGVMSLTAHEVSGIGAIQV 60
Query: 55 IFTALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA 114
F L +AY + I + I + S+ ++G+ LG++ + +IS + I+G+ I
Sbjct: 61 FFATLGGVWAYRKSGLINKTLIIYMGSSILLGSVLGSYFSHYISEKGINFIYGILAIIAV 120
Query: 115 YRMFRGKRGERRE------EISVNEKLVPIGGFFSGIASGLLGVGGGIINVP-LLTWLGV 167
MF K+G++ + E+ N+ L F G SG+LG GG I VP +L+ L +
Sbjct: 121 ILMFIPKKGQKGQEHSEDKEVIFNKWLASSLAFIIGGVSGILGAGGAFILVPIMLSILNI 180
Query: 168 PIHYAVATSSFAIVFTSTSSA-IKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKAS 226
P+ VA SS AI F S+ A + G V +L+ +I + IGA + ++
Sbjct: 181 PVRVTVA-SSLAITFLSSIGATVGKVITGQVLFVPALVLMITSLIASPIGASVGQKVNTK 239
Query: 227 SLRKGFAVVMLILAIRMILK 246
L+ A ++ AI++ L+
Sbjct: 240 FLQWVLAQLIGATAIKIWLE 259
>emb|CAC11726.1| (AL445064) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 269
Score = 96.7 bits (237), Expect = 2e-19
Identities = 65/258 (25%), Positives = 126/258 (48%), Gaps = 21/258 (8%)
Query: 10 AFVTGVVTGTLAAMFGLGGGFLLVPIL-NLMGVEIHHAV-GTSSASIIFTALSSSYAYHR 67
+ ++G++ G + G GG L +P+L +G++ H V GT++ ++ AL + Y++ R
Sbjct: 6 SIISGIIVGFSLGLIGGGGSILAIPLLIYFVGIKNPHLVIGTTALAVGINALINVYSHLR 65
Query: 68 QKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGERRE 127
+K + R G + ++G LG + GKL +F +I + MF K +
Sbjct: 66 KKNVSLRTGAIFTVFGILGVLLGTTLGLITPGGKLLFLFSFLMIVIGAYMFITKCKTCKN 125
Query: 128 EISVNEK------------------LVPIGGFFSGIASGLLGVGGGIINVPLLTWLG-VP 168
++ +K + + G +G ASG G+GGG + VP L + +
Sbjct: 126 YDAIPKKNNNDDPPDPPKKGLWQKIKLEVFGVLAGFASGYFGIGGGFLIVPALLYSADIT 185
Query: 169 IHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSL 228
++ AV TS ++ +A+++ G V + L V G I G GA+++ K S+L
Sbjct: 186 MNLAVGTSLMSVGTFGLVTALRYGIAGKVLVTIALLYVLGGIFGGYAGAKLSSSMKRSTL 245
Query: 229 RKGFAVVMLILAIRMILK 246
R+ F+++++++ I M ++
Sbjct: 246 RRFFSLIIIVVGIYMAIE 263
>pir||F81096 conserved hypothetical protein NMB1319 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226561|gb|AAF41694.1| (AE002480) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 257
Score = 94.0 bits (230), Expect = 2e-18
Identities = 71/251 (28%), Positives = 114/251 (45%), Gaps = 24/251 (9%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPI----LNLMGVEIHH-----AVGTSSASIIF 56
I+L G G +A +FG+GGG L+VP+ L+L G+ H AVGTS A ++F
Sbjct: 6 IILILLAVGSAAGFIAGLFGVGGGTLIVPVVLWVLDLQGLAQHPYAQHLAVGTSFAVMVF 65
Query: 57 TALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYR 116
TA SS H+++ + ++ + + G + GA +I L++ F + L VA++
Sbjct: 66 TAFSSMLGQHKKQAVDWKTVFTMMPGMIFGVFTGALSAKYIPAFGLQIFFILFLTAVAFK 125
Query: 117 MFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATS 176
+ L + F G S +G+GGG ++VP L G P H A+ TS
Sbjct: 126 TLHTDPQTASRPLPGLPGLTAVSTLF-GTMSSWVGIGGGSLSVPFLIHCGFPAHKAIGTS 184
Query: 177 SFAIVFTSTSSAIKHYFLGNVELYWLP-------------LLVPGLIIGAQIGARIAKRT 223
S + S AI Y L + + LP +L I A +G + A +
Sbjct: 185 SGLAWPIALSGAIS-YLLNGLNIAGLPEGSLGFLYLPAVAVLSAATIAFAPLGVKTAHKL 243
Query: 224 KASSLRKGFAV 234
++ L+K A+
Sbjct: 244 SSAKLKKSSAL 254
>gb|AAD10707.1| (AF047001) unknown [Oenococcus oeni temperate bacteriophage fOg44]
Length = 252
Score = 90.9 bits (222), Expect = 1e-17
Identities = 67/243 (27%), Positives = 117/243 (47%), Gaps = 10/243 (4%)
Query: 12 VTGVVTGTLAAMFGLGGGFLLVPILN-LMGVEIHHAVGTSSASIIFTALSSSYAYHRQKR 70
V G++ GT +FG GG + + IL ++G+ A TS +++ + + + Y+RQ
Sbjct: 8 VIGLIVGTFVILFGGGGAAIYLGILTGVVGLNASTAASTSLVTVLPSLILGVWTYYRQGT 67
Query: 71 ILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGERREEI- 129
I R+G + TA+ +G+ ++S+I K I G+ LI + M K+ + + +
Sbjct: 68 IKTRLGNQMLITAIPAVIIGSLISSYIPDNLYKWIVGIILILLGINMLFQKQKSQVDPVM 127
Query: 130 --SVNEK---LVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIVFTS 184
+N K I G G+ G+ G+ GG + L +G+ AVATS++ +VF S
Sbjct: 128 SKQINRKGRFKAGICGIIGGLMVGVAGMSGGAPIIAGLFLIGLSTVNAVATSAYVLVFMS 187
Query: 185 TSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRMI 244
+ H V+ L+ G +IGA IG R+ R S + K + ++A ++
Sbjct: 188 AIGTVFHIVGSQVDWNAGISLMVGALIGAAIGPRLLTRLTKSKVGK---YIKPVIAFFLV 244
Query: 245 LKG 247
L G
Sbjct: 245 LLG 247
>pir||B83290 conserved hypothetical protein PA2847 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948934|gb|AAG06235.1|AE004711_7 (AE004711)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 249
Score = 90.1 bits (220), Expect = 2e-17
Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 15/247 (6%)
Query: 11 FVTGVVTGTLAAMFGLGGGFLLVPILNLM-GVEIHHAVGTSSASIIFTALSSSYAYHRQK 69
F+ G+V G L +FG+GGG L +P L ++ G++ A GT+ ++ + + + YH++
Sbjct: 8 FLLGMVLGCLGGLFGIGGGLLAIPALGVIFGLDQQLAQGTALVMVVPNVVLALWRYHQRN 67
Query: 70 RILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMF-----RGKRGE 124
RI R +LA T ++ A+L + + + I +++ F + L+ +A MF R +G
Sbjct: 68 RIDPRQAGVLALTGLLCAFLASSVAARIDAARMREAFVIFLLALAGYMFWRLFRRPPQGG 127
Query: 125 RREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIVFTS 184
+ + + G +G GL GVGGG++ P+LT + + A+ S
Sbjct: 128 ATPRYGL--PWMGVLGLGAGSLGGLFGVGGGVLATPVLTSVFGLAQVVAQGLALALAAPS 185
Query: 185 TSSAIKHYFL-GNVELYW---LPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILA 240
T+ A+ Y + G+V+ W +PL + GL + G R+A SLR F + + A
Sbjct: 186 TAVALGTYAMHGHVD--WRMGIPLALGGL-LSISWGVRLAHALPERSLRMAFCAFLALCA 242
Query: 241 IRMILKG 247
+ ++++G
Sbjct: 243 VLLLVRG 249
>emb|CAC12114.1| (AL445066) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 255
Score = 90.1 bits (220), Expect = 2e-17
Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 27/262 (10%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
++L + G+ G L + G G ++VP L++MG+ +VGTS + T + Y Y
Sbjct: 3 LILILLLIGIAVGALTGITGSSGVLIVVPALSIMGLSFQDSVGTSLLVDVITTSTVIYVY 62
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGER 125
+ K I +++ A+VG +G + +S L++ F + I +A +MFR RG +
Sbjct: 63 LKNKNIDIIPAVIMGIGALVGTQIGIRIAISVSERPLEIAFAILTIILAIQMFRRSRGHK 122
Query: 126 REEISVNEK--------------LVPIGGFFSGIASGLLGVGGGIINVP-LLTWLGVPIH 170
S+N K +P+ GI +G LG GGI+ + L+ + +
Sbjct: 123 ---TSINGKKEYRRAAWVFAFLLSIPV-----GILTGTLGTSGGIMFIGILMLFFSLSAQ 174
Query: 171 YAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLI--IGAQIGARIAKRTKASSL 228
V T++FA++F++ S + + +G + + L +V G+I I + + A R K +
Sbjct: 175 KMVGTATFAMLFSALSGSAGYLIVGRISI--LDAVVIGIISLISGYLFSTTANRIKERIV 232
Query: 229 RKGFAVVMLILAIRMILKGLGY 250
+ + +I+ I +K +G+
Sbjct: 233 YEAIGSIFVIVVIVEGMKIMGF 254
>gi|11497741 conserved hypothetical transmembrane protein [Archaeoglobus
fulgidus] >gi|7450144|pir||D69265 conserved hypothetical
transmembrane protein AF0124 - Archaeoglobus fulgidus
>gi|2650525|gb|AAB91108.1| (AE001098) conserved
hypothetical transmembrane protein [Archaeoglobus
fulgidus]
Length = 289
Score = 89.3 bits (218), Expect = 4e-17
Identities = 84/282 (29%), Positives = 131/282 (45%), Gaps = 45/282 (15%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILN-LMGVEIHHAVGTSSASIIFTALSSSYA 64
+LL AF + G +A + G+GGG L VP+ I G A + +ALSSS
Sbjct: 8 VLLFAFT--FLIGIIAPISGVGGGVLFVPLTTAFFPFNIDFVRGAGLAIALTSALSSSPR 65
Query: 65 YHRQKRILYRVGILLAS----TAVVGAYLGAWMTSFISPGK--LKVIFGVTLIFVAYRMF 118
+ R I++A+ +++ G+ LG W+T+ + GK + + G++L F+ M
Sbjct: 66 LLEKGLANLRASIVIATVSIASSIAGSVLGLWITNEMPEGKHYITIALGISLFFIFAVMV 125
Query: 119 RGKRGERREEISVNE---KLVPIGGFFS------------------------GIASGLLG 151
+ KR E E SV+ KL G ++ G+ +G+ G
Sbjct: 126 KSKRVEFPEVDSVDSISAKLDLSGRWYEPSRDEVIEYRLTRLPYSLPAFAGVGLVAGMFG 185
Query: 152 VGGGIINVPLLTWL-GVPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVP--- 207
+G G NVP+L L G P+ AV+TS I ++ + G V LPL+V
Sbjct: 186 LGAGWANVPVLNLLMGAPLRVAVSTSMLIITLNDAAAMWVYIARGAV----LPLIVVPSV 241
Query: 208 -GLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRMILKGL 248
G+ +GA+IGA IA++ + +R +ML AI I KGL
Sbjct: 242 FGVTLGARIGAMIAEKVRPRVIRLVVLGIMLFAAILDIEKGL 283
>pir||D71910 hypothetical protein jhp0619 - Helicobacter pylori (strain J99)
>gi|4155164|gb|AAD06192.1| (AE001493) putative
[Helicobacter pylori J99]
Length = 255
Score = 88.2 bits (215), Expect = 9e-17
Identities = 61/243 (25%), Positives = 118/243 (48%), Gaps = 14/243 (5%)
Query: 14 GVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAYHRQKRILY 73
G+ TG L+ +FG+GGG ++VPI+ G ++G S ++ ++ S ++K + +
Sbjct: 11 GLFTGILSGIFGIGGGMIIVPIMLATGHSFEESIGISILQMVLSSFVGSVLNFKKKSLDF 70
Query: 74 RVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGERREEISVNE 133
+G+L+ + ++GA ++ +S L VIF + V Y M + +++++ +
Sbjct: 71 SLGLLIGAGGLIGASFSGFILKIVSSKILMVIFA---LLVVYSMIQFVLKPKKKDLITDT 127
Query: 134 KLVPIGG---FFSGIASGL----LGVGGGIINVPLLTW-LGVPIHYAVATSSFAIVFTST 185
K + G F G +G LG+GGG++ VPL+ + LG VA F I+F+S
Sbjct: 128 KRYHLQGLKLFLIGALTGFFAITLGIGGGMLMVPLMHYFLGYDSKKCVALGLFFILFSSI 187
Query: 186 SSAIK---HYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIR 242
S A H+ + L ++ G ++G IG + + K + + L++
Sbjct: 188 SGAFSLMYHHIINKEVLLAGAIVGLGSVMGVSIGIKWIMGLLNEKMHKALILGVYGLSLL 247
Query: 243 MIL 245
++L
Sbjct: 248 IVL 250
>emb|CAB62748.1| (AL133424) putative membrane protein [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 88.2 bits (215), Expect = 9e-17
Identities = 70/240 (29%), Positives = 113/240 (46%), Gaps = 5/240 (2%)
Query: 7 LLKAFVTGVVTGTLAAMFGLGGGFLLVPIL-NLMGVEIHHAVGTSSASIIFTALSSSYAY 65
L+ A + G G G GG L VP L L+G A S +I T++++ A+
Sbjct: 4 LILALLAGAAAGVSLGALGAGGSILTVPALVYLLGFTPAAATTASLVVVIVTSVTALVAH 63
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGER 125
R + +R G+L A+ V+ A ++S + L ++F M G+R
Sbjct: 64 ARAGAVRWRAGLLFAAAGVLPAAGAGALSSRVPATVLTLLFAALAALAGLHML-GRRAP- 121
Query: 126 REEISVNEKLVPIGGFFSGIASGLLGVGGGIINVP-LLTWLGVPIHYAVATSSFAIVFTS 184
RE +V+ G G +G LGVGGG + VP L+ L VP+ AV TS + +
Sbjct: 122 RENGAVSGARAAGAGAGLGAVTGFLGVGGGFLAVPALVAVLAVPMSAAVGTSLLVVGANA 181
Query: 185 -TSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRM 243
+ A + Y +++L L + ++GA G R+A + A +LR+ F V+L +A+ M
Sbjct: 182 LVALAARAYSSVHLDLTLLLPFLAAAVLGAWDGRRLAAKVSAGTLRRVFGAVLLAVAVAM 241
>gi|11499156 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450141|pir||H69444 conserved hypothetical protein
AF1561 - Archaeoglobus fulgidus
>gi|2648990|gb|AAB89677.1| (AE000994) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 285
Score = 87.8 bits (214), Expect = 1e-16
Identities = 73/279 (26%), Positives = 132/279 (47%), Gaps = 51/279 (18%)
Query: 11 FVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAYH---- 66
FV G LA M G+GGG L VP+++ G H A +F AL+ + A
Sbjct: 15 FVFTFFLGILAVMAGVGGGVLFVPLVS--GFFPFHLDYVRGAG-LFVALTGALAAGPGLL 71
Query: 67 ----RQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKR 122
R+ + ++ ++ +++GA +G + + I+ + + G+T++F+++ M KR
Sbjct: 72 KRGLANLRLAMPLALIASTCSIIGALIGLALPTNIT----QTLLGITILFISFVMVTSKR 127
Query: 123 GE--RREEISVNEKLVPIGGF-------------------------FSGIASGLLGVGGG 155
E + E+ +++ I G F GI +G+ G+G G
Sbjct: 128 VEFPKVEKADKISQMLGIYGIYYEESMGKEIEWKVHRTIPSMILFAFIGIIAGMFGLGAG 187
Query: 156 IINVPLLT-WLGVPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLL-VP---GLI 210
NVP+L ++G P+ A TS F + T TS+A + G+V +PL+ +P G++
Sbjct: 188 WANVPVLNLFMGTPLKIAAGTSKFLLSITDTSAAWVYLNNGSV----IPLITIPSCLGIM 243
Query: 211 IGAQIGARIAKRTKASSLRKGFAVVMLILAIRMILKGLG 249
+G+ +G R+ + +R V++ +R +LKGLG
Sbjct: 244 LGSYVGVRVLAKASPKMIRSIVIAVLIFAGLRSLLKGLG 282
>pir||E64604 conserved hypothetical integral membrane protein HP0677 -
Helicobacter pylori (strain 26695)
>gi|2313804|gb|AAD14882.1| (AE000581) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 255
Score = 86.6 bits (211), Expect = 3e-16
Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 14/243 (5%)
Query: 14 GVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAYHRQKRILY 73
G+ TG L+ +FG+GGG ++VPI+ G ++G S + ++ S ++K + +
Sbjct: 11 GLFTGILSGIFGIGGGLIIVPIMLATGHSFEESIGISILQMALSSFVGSVLNFKKKSLDF 70
Query: 74 RVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGERREEISVNE 133
+G+L+ + ++GA ++ +S L VIF + V Y M + +++++ +
Sbjct: 71 SLGLLIGAGGLIGASFSGFVLKIVSSKILMVIFA---LLVVYSMIQFVLKPKKKDLIADT 127
Query: 134 KLVPIGG---FFSGIASGL----LGVGGGIINVPLLTW-LGVPIHYAVATSSFAIVFTST 185
K + G F G +G LG+GGG++ VPL+ + LG VA F I+F+S
Sbjct: 128 KRYHLQGLKLFLIGTLTGFFAITLGIGGGMLMVPLMHYFLGYDSKKCVALGLFFILFSSI 187
Query: 186 SSAIK---HYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIR 242
S A H+ + L ++ G ++G IG + + K + + L++
Sbjct: 188 SGAFSLMYHHIINKEVLLAGAIVGLGSVMGVSIGIKWIMGLLNEKMHKALILGVYGLSLL 247
Query: 243 MIL 245
++L
Sbjct: 248 IVL 250
>pir||T44070 conserved hypothetical protein [imported] - Staphylococcus aureus
>gi|5360802|dbj|BAA82172.1| (D86934) ORF N002
[Staphylococcus aureus] >gi|6332751|dbj|BAA86633.1|
(AB033763) hypothetical protein [Staphylococcus aureus]
Length = 251
Score = 85.8 bits (209), Expect = 5e-16
Identities = 60/252 (23%), Positives = 121/252 (47%), Gaps = 10/252 (3%)
Query: 2 IDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLM-------GVEIHHAVGTSSASI 54
+D ++ + GV G ++ + G+GG ++ P + L+ + A G +S+ +
Sbjct: 1 MDIVNIVIMLLIGVFGGFISGLVGVGGAIIIYPAILLLPPLFGAPAYSAYIASGLTSSQV 60
Query: 55 IFTALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA 114
F+ LS S ++ ++ + + ++G+ LGA++ + + ++ + +
Sbjct: 61 FFSTLSGSLKARKKTEFSPQLVLYMGGGMIIGSMLGAFLANLFDATFVNTVYIIIALLAL 120
Query: 115 YRMFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVP-LLTWLGVPIHYAV 173
MF K E+ S N+ L+ I G F GI SG++G GG I +P LL +P++ V
Sbjct: 121 TLMFI-KVKPSSEKSSFNKYLLVIIGLFIGIISGIVGAGGAFIIIPILLVLFKLPMNTVV 179
Query: 174 ATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFA 233
A S +S + + G + LY L+ G II A IG +++K+ + ++K
Sbjct: 180 ANSIVIAFISSIGAFVIKLIQGYIPLYDALFLIIGSIIFAPIGLKLSKKV-PNIIQKWII 238
Query: 234 VVMLILAIRMIL 245
++++ AI ++
Sbjct: 239 SILIVFAIVQLI 250
>dbj|BAA94322.1| (AB033763) hypothetical protein [Staphylococcus aureus]
Length = 252
Score = 83.5 bits (203), Expect = 2e-15
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 12/250 (4%)
Query: 1 MIDTAILLKAFVTGVVTGTLAAMFGLGGGF-------LLVPILNLMGVEIHHAVGTSSAS 53
MI +++ V G++ G ++ + G+GG LL P+ L + A G +S+
Sbjct: 1 MISITVIIVMLVIGILGGFISGLVGIGGAIVIYPALLLLPPLFGLPTYSAYIASGLTSSQ 60
Query: 54 IIFTALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFV 113
+ F+ LS S ++ K + + + S V+G+ LGA + + + + VI+ + +
Sbjct: 61 VFFSTLSGSLKAYKNKNFSRTLILNMGSGMVIGSILGALLATVFNSQFVNVIYIIIALLA 120
Query: 114 AYRMFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVP-LLTWLGVPIHYA 172
MF K I N L+ G G+ SG++G GG I +P LL +P++
Sbjct: 121 LILMFI-KVTPSTSHIKFNRVLLITIGGIIGLVSGIVGAGGAFIIIPVLLVIFKLPMN-M 178
Query: 173 VATSSFAIVFTSTSSA-IKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKG 231
V T+S I F S+ A I G + + L+ G I+ +G +I ++ S++KG
Sbjct: 179 VVTNSIVIAFISSIGAFIIKLLQGYIPINSAIPLILGSILFTPLGMKIGQKI-PDSIQKG 237
Query: 232 FAVVMLILAI 241
+++++AI
Sbjct: 238 IVSILIVIAI 247
>emb|CAC12235.1| (AL445066) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 257
Score = 81.5 bits (198), Expect = 9e-15
Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 11/237 (4%)
Query: 15 VVTGTLAAMF---GLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAYHRQKRI 71
++T L+A+F G+G L+PI G+ A +F+ S++ + I
Sbjct: 13 ILTWILSAVFAISGVGAANTLIPIYYSFGIPFSIAAAAGLLLNVFSLSSATANNAKHSFI 72
Query: 72 LYRVGILLASTAVVGAYLGAWMTSFISPGK-LKVIFGVTLIFVAYRMFRGKRGERREEIS 130
L+++G++ AV A +GA M +P K L +IF V L + + + G++ +++ +
Sbjct: 73 LWKIGVIFLIPAVAMAPVGA-MVGVHTPRKYLLIIFVVFLSYTLFNLISGRKKGKKDAVL 131
Query: 131 VNEKLVPIG---GFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIVFTSTSS 187
G G +G GLLGVGGG+I +P+LT++ TS+F +F+S S
Sbjct: 132 TGISGAITGIFIGALAGFLGGLLGVGGGMIILPVLTFMESDYKKIAGTSAFIALFSSASG 191
Query: 188 AIKHYFL--GNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIR 242
+ + + G L W+ +L+ G I G G+ + R + +R +++L + ++
Sbjct: 192 FLSYLAILRGVNYLLWIVVLIGG-IAGGFTGSFLMHRFDSRKVRLLIIIIILFVTVK 247
>pir||B64548 conserved hypothetical integral membrane protein HP0226 -
Helicobacter pylori (strain 26695)
>gi|2313315|gb|AAD07292.1| (AE000542) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 277
Score = 79.2 bits (192), Expect = 5e-14
Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 38/275 (13%)
Query: 4 TAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSY 63
TA +L + G+ TG A FG+GGG ++VP HAVG S ++F+++ S
Sbjct: 5 TAFILA--LVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVGSI 62
Query: 64 AYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTL--IFVAYRMFRGK 121
+++ + R G A ++GA LG+++ I L +F V + F+ Y K
Sbjct: 63 INYKKGLLDLREGSFAALGGLMGAILGSFILKIIDDKILMAVFVVVVCYTFIKYAFSSNK 122
Query: 122 RGERREE----ISVNEK------------------LVPIGGFFSGIASGLLGVGGGIINV 159
+ + EE + N K ++ + GF +GI S LG+GGGI+ V
Sbjct: 123 KPKHFEEMHFDLHANNKTPEKKRAIPFVSMDRTHGVLMLAGFVTGIFSIPLGMGGGILMV 182
Query: 160 PLLTW-LGVPIHYAVATSSFAIVFTSTSSAIKHY---FLGNVELYWLPLLVPGLI--IGA 213
P L + L V F +VF S S I Y L N+ + G+I IGA
Sbjct: 183 PFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGRVLDNISVQ------AGVITGIGA 236
Query: 214 QIGARIAKRTKASSLRKGFAVVMLILAIRMILKGL 248
+G I + A + K +++L++ IL L
Sbjct: 237 FLGVGIGIKLIALANEKVHKILLLLIYALSILATL 271
>pir||A82766 membrane protein XF0764 [imported] - Xylella fastidiosa (strain
9a5c) >gi|9105656|gb|AAF83574.1|AE003917_8 (AE003917)
membrane protein [Xylella fastidiosa]
Length = 264
Score = 77.3 bits (187), Expect = 2e-13
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 9/247 (3%)
Query: 7 LLKAFVTGVVTGTLAAMFGLGGGFLLVPIL-NLMGVEIHH-AVGTSSASIIFTALSSSYA 64
L+ +G + G + G GG L P+L ++GV H A+GTS+ ++ A ++ A
Sbjct: 9 LIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSANAYANLIA 68
Query: 65 YHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGK--- 121
+ + + +R ++ A +GA+LG+ + I +L ++FG+ + V M RG+
Sbjct: 69 HAWKGHVWWRSAVIFALVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLRGRATA 128
Query: 122 -RGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTW-LGVPIHYAVATSSFA 179
E+ + + +G ASG G+GGG + VP L + +P A+ +S A
Sbjct: 129 PHAEQHQTVLRMCMKTSAVAILTGAASGFFGIGGGFLIVPALIFATRMPTINAIGSSLLA 188
Query: 180 IVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASS--LRKGFAVVML 237
+ + + + V+ + G I G +G +A R AS L + F ++++
Sbjct: 189 VGTFGLITTLNYARHDLVDWTIAMEFIVGGITGGGLGTLLATRFSASKHLLNRVFGLIVI 248
Query: 238 ILAIRMI 244
+AI +I
Sbjct: 249 AVAIYVI 255
>dbj|BAB05177.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 285
Score = 77.3 bits (187), Expect = 2e-13
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 7/238 (2%)
Query: 14 GVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAYHRQKRILY 73
G + G + FG+GGG +L P+L L G +GTS + T+L ++A+ R K I +
Sbjct: 10 GSIIGIFSGFFGIGGGIILTPLLLLFGFPPAVVIGTSLMLSLGTSLGGAWAHFRMKNIHW 69
Query: 74 RVGILLASTAVVGAYLGAWMTSFISPGKLKVI-----FGVTLIFVAYRMFRGKRGERREE 128
++ S +VG L + F+ +L I + L F A M + +
Sbjct: 70 SHVFIINSAGIVGTQLAVPLMLFLEERQLAEITISLCYIFLLGFFASSMLIPQTKRKPII 129
Query: 129 ISVNEKLVPIG-GFFSGIASGLLGVGGGIINVP-LLTWLGVPIHYAVATSSFAIVFTSTS 186
++ KL+ + G +G S +LGV GG VP L++ L AV TS +++F +
Sbjct: 130 RNLPNKLIAVFIGLGAGFISAMLGVSGGFFLVPMLISLLRFAPKKAVGTSLASVIFIVFA 189
Query: 187 SAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRMI 244
I + V LL+ G +IG+ +GA++ ++R + +++ +I
Sbjct: 190 GFISYSVQTPVNFGLGLLLIIGTLIGSPVGAKMTAFYSEKAMRTLLGSLYIVIIFSVI 247
>pir||F71960 hypothetical protein jhp0211 - Helicobacter pylori (strain J99)
>gi|4154732|gb|AAD05794.1| (AE001459) putative
[Helicobacter pylori J99]
Length = 277
Score = 76.9 bits (186), Expect = 2e-13
Identities = 75/272 (27%), Positives = 123/272 (44%), Gaps = 32/272 (11%)
Query: 4 TAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSY 63
TA +L + G+ TG A FG+GGG ++VP HAVG S ++F+++ S
Sbjct: 5 TAFILA--LVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVGSI 62
Query: 64 AYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTL--IFVAYRMFRGK 121
+++ + + G A ++GA LG+++ I+ L +F V + F+ Y K
Sbjct: 63 INYKKGLLDLKEGSFAALGGLMGAILGSFILKVINDKILMSVFVVVVCYTFIKYAFSSNK 122
Query: 122 RGERREE----ISVNEK------------------LVPIGGFFSGIASGLLGVGGGIINV 159
+ E EE + N K ++ + GF +GI S LG+GGGI+ V
Sbjct: 123 KPEHFEEMHFDLHANNKTPEKKRAIPFVSMDRTHGVLMLAGFVTGIFSIPLGMGGGILMV 182
Query: 160 PLLTW-LGVPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLI--IGAQIG 216
P L + L V F +VF S S I Y N ++ + G+I +GA +G
Sbjct: 183 PFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLY---NGKVLDDISVQAGVITGVGAFLG 239
Query: 217 ARIAKRTKASSLRKGFAVVMLILAIRMILKGL 248
I + A + K +++L++ IL L
Sbjct: 240 VGIGIKLIALANEKVHKILLLLIYALSILATL 271
>pir||B81200 conserved hypothetical protein NMB0432 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225656|gb|AAF40870.1| (AE002399) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 262
Score = 76.5 bits (185), Expect = 3e-13
Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 11/252 (4%)
Query: 1 MIDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALS 60
M D I+L + ++ G + A+ G GGG + +P L L G+ A+ T+ S
Sbjct: 1 MEDLYIILALGLVAMIAGFIDAIAG-GGGLITLPALLLAGIPPVSAIATNKLQAAAATFS 59
Query: 61 SSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA-YRMFR 119
++ ++ R+ I ++ G+ +A+ + VG GA S +S L + V LIFVA Y +F
Sbjct: 60 ATVSFARKGLIDWKKGLPIAAASFVGGVAGALSVSLVSKDILLAVVPVLLIFVALYFVFS 119
Query: 120 -----GKRGERREEISV-NEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAV 173
K G+ R + + P+ GF+ G+ GVG + + + LG + A+
Sbjct: 120 PKLDGSKEGKARMSFFLFGLTVAPLLGFYDGVFGP--GVGSFFL-IAFIVLLGCKLLNAM 176
Query: 174 ATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFA 233
+ + A V + S G++ + G +GA +GAR A R + ++
Sbjct: 177 SYTKLANVACNLGSLSVFLLHGSIIFPIAATMAVGAFVGANLGARFAVRFGSKLIKPLLI 236
Query: 234 VVMLILAIRMIL 245
V+ + +A+++++
Sbjct: 237 VISISMAVKLLI 248
>pir||C71006 hypothetical protein PH1345 - Pyrococcus horikoshii
>gi|3257768|dbj|BAA30451.1| (AP000006) 242aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 242
Score = 76.1 bits (184), Expect = 4e-13
Identities = 54/230 (23%), Positives = 110/230 (47%), Gaps = 2/230 (0%)
Query: 16 VTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAYHRQKRILYRV 75
+ + ++ G+G +VP++ +GV + A T + LS++ + ++ ++
Sbjct: 12 ILSVIFSIGGVGSAIAIVPVMAWLGVPLMTAKPTGLFINTLSMLSATVKNLKHGKLELKL 71
Query: 76 GILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGERREEISVNEKL 135
G+ + A + A LGA+ FI + +IF L++ + K +R E + +
Sbjct: 72 GLPILLVATMVAPLGAYTGKFIPRRYIFLIFMAFLVYSGTMLLFFKPRKRAENGNHLVEG 131
Query: 136 VPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIVFTSTSSAIKHYFLG 195
IGG +G GLLGVGGG I P L LG AT++ + F+S S + ++ +G
Sbjct: 132 SVIGGI-AGFLGGLLGVGGGGIISPALIMLGYEPKKVAATTALVVFFSSLSGFLTYWGMG 190
Query: 196 NVELYWLPLLVPGLIIGAQIGARIAK-RTKASSLRKGFAVVMLILAIRMI 244
++L L + + G IG + + + ++K +++ ++ ++M+
Sbjct: 191 TLDLRLLAWVSISALAGGWIGTHLMHFKMSSEQVKKAIGMILYLMVVKML 240
>emb|CAB61305.1| (AL132991) hypothetical protein SCF55.35 [Streptomyces coelicolor
A3(2)]
Length = 254
Score = 75.7 bits (183), Expect = 5e-13
Identities = 64/250 (25%), Positives = 113/250 (44%), Gaps = 11/250 (4%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
+L+ + G+V G G GG + + L G+ GT+ + + T + ++ AY
Sbjct: 8 VLVALGLLGLVGGVGITAVGPGGVLPTIGLFALTGLTPAQVAGTALVTHVATGMLATAAY 67
Query: 66 HRQKRI----LYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA----YRM 117
R ++ R ++LA +AV G LG + S++S ++ GV + VA +R
Sbjct: 68 TRSGQLREPGTRRTALVLAVSAVAGTPLGVLVNSYVSKRMFGLVLGVFVAGVAGLVWFRE 127
Query: 118 FRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSS 177
R G R + +V G +A+G++G+GG ++ VPLL LGVP+ ++A++
Sbjct: 128 HRRPAGSRAHPPTA---VVAGTGCAVAVAAGVVGIGGPMLTVPLLVALGVPVLESLASAQ 184
Query: 178 FAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVML 237
V + + + G V+ L+ + G +G RIA L+ +L
Sbjct: 185 AQSVVIAGVGTVGYLAQGAVDWPLAVLVGVPELAGVLLGWRIAHALPTRHLKYALITTLL 244
Query: 238 ILAIRMILKG 247
LA + L G
Sbjct: 245 ALAPYLALHG 254
>pir||A81776 conserved hypothetical integral membrane protein NMA2053 [imported]
- Neisseria meningitidis (group A strain Z2491)
>gi|7380681|emb|CAB85271.1| (AL162758) conserved
hypothetical integral membrane protein [Neisseria
meningitidis Z2491]
Length = 262
Score = 75.7 bits (183), Expect = 5e-13
Identities = 62/253 (24%), Positives = 117/253 (45%), Gaps = 13/253 (5%)
Query: 1 MIDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALS 60
M D I+L + ++ G + A+ G GGG + +P L L G+ A+ T+ S
Sbjct: 1 MEDLYIILALGLVAMIAGFIDAIAG-GGGLITLPALLLAGIPPVSAIATNKLQAAAATFS 59
Query: 61 SSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA-YRMFR 119
++ ++ R+ I ++ G+ +A+ + G +GA S +S L + V LIFVA Y +F
Sbjct: 60 ATVSFARKGLIDWKKGLPIAAASFAGGVVGALSVSLVSKDILLAVVPVLLIFVALYFVFS 119
Query: 120 -----GKRGERREEISV-NEKLVPIGGFFSGIASGLLGVG-GGIINVPLLTWLGVPIHYA 172
K G+ R + + P+ GF+ G+ G G G + + LG + A
Sbjct: 120 PKLDGSKEGKARMSFFLFGLTVAPLLGFYDGV----FGPGVGSFFLIAFIVLLGCKLLNA 175
Query: 173 VATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGF 232
++ + A V + S G++ + G +GA +GAR A R + ++
Sbjct: 176 MSYTKLANVACNLGSLSVFLLHGSIIFPIAATMAVGAFVGANLGARFAVRFGSKLIKPLL 235
Query: 233 AVVMLILAIRMIL 245
V+ + +A+++++
Sbjct: 236 IVISISMAVKLLI 248
>gi|11499120 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450143|pir||D69440 conserved hypothetical protein
AF1525 - Archaeoglobus fulgidus
>gi|2649039|gb|AAB89723.1| (AE000997) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 285
Score = 75.3 bits (182), Expect = 7e-13
Identities = 75/277 (27%), Positives = 130/277 (46%), Gaps = 43/277 (15%)
Query: 11 FVTGVVTGTLAAMFGLGGGFLLVPILNLMG-VEIHHAVGTSSASIIFTALSSSYAYHRQK 69
F+ ++ G LA + G+GGG + VP+L ++ + G + +AL SS A +
Sbjct: 8 FLFSLLIGILAPLSGVGGGVMFVPLLTAFSEFDVDYIRGGGVIVALTSALVSSPAVMMRG 67
Query: 70 ----RILYRVGILLASTAVVGAYLGAWMTSFISPGK------LKVIFGVTLIFVAYRM-- 117
R++ + ++ TA G YLG +++ GK L ++ GV L+ +
Sbjct: 68 FTNLRMVLPLVLVSNLTAFAGGYLGLYISREFPEGKHYITLLLGILLGVILMIMLTTERL 127
Query: 118 -FRGKRGERR-----------------EEISVNEKLVPIGGF---FSGIASGLLGVGGGI 156
F + E R EEIS + P+ F G+ +G+ G+G G
Sbjct: 128 EFPESKEEDRIGRFFEMRGACFEPSLGEEISYHASNTPVALLMFAFVGLIAGMFGLGAGW 187
Query: 157 INVPLLTWLGV-PIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLP-LLVP---GLII 211
NVP+L + + PI AVATS I+ ++ + + G V LP + VP G+ +
Sbjct: 188 ANVPVLNLVMLLPIRVAVATSMLIILLNTSIAGWVYIAKGAV----LPDIAVPATVGMAL 243
Query: 212 GAQIGARIAKRTKASSLRKGFAVVMLILAIRMILKGL 248
G+++GA +A + + + +R+ +++LI A I KGL
Sbjct: 244 GSKLGASLALKVRPAVIRQVVLIILLIAASTNIYKGL 280
>gi|11499224 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450142|pir||G69453 conserved hypothetical protein
AF1632 - Archaeoglobus fulgidus
>gi|2648914|gb|AAB89606.1| (AE000989) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 334
Score = 73.7 bits (178), Expect = 2e-12
Identities = 60/278 (21%), Positives = 130/278 (46%), Gaps = 36/278 (12%)
Query: 7 LLKAFVTGVVTGTLAAMFGLGGGFLLVPI-LNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
++ F+ ++ G + + G+GGG + V + + ++ + G + + T+L+S+ +
Sbjct: 49 VILVFLFALIIGIIGPLSGVGGGVIFVGLGMAILPFNVDFIRGAGLVAALSTSLNSAPYF 108
Query: 66 HRQKRILYRVGILLASTAVV----GAYLGAWMTSFISPGK--LKVIFGVTLIFVAYRMFR 119
++ R+ L S + + G +G W+++ G +K+ GV L+ + + R
Sbjct: 109 TKKGLANLRIVAPLVSVSTIFSVFGGVIGLWISNSFPEGSYYVKMSLGVVLLVLLLILSR 168
Query: 120 GKRGE----RREEISVNEKLVPIGGFFS------------------------GIASGLLG 151
K E R ++ ++E + GG++ G +G+ G
Sbjct: 169 SKNVEYPPPREKKDRLSEMIDLTGGWYEPTLNRIVTYEASNLPLAMLAFSGVGFLAGMFG 228
Query: 152 VGGGIINVPLLTW-LGVPIHYAVATSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLI 210
+G G NVP+L +G+P+ AVA+S + ++S + G V + +V G+
Sbjct: 229 LGAGWANVPILNLVMGLPLKAAVASSMLILAINDSASLWVYLANGAVLPIVVVPVVLGIS 288
Query: 211 IGAQIGARIAKRTKASSLRKGFAVVMLILAIRMILKGL 248
IG++IG+R+A +TK +++ ++ + + I++GL
Sbjct: 289 IGSRIGSRLAAKTKPKVIKRLVIALIALSGVVNIIQGL 326
>sp|P29942|YCB9_PSEDE HYPOTHETICAL 27.4 KD PROTEIN IN COBO 3'REGION (ORF9)
>gi|94984|pir||I38164 hypothetical protein 9 -
Pseudomonas sp >gi|551929|gb|AAA25785.1| (M62866) ORF9
[Pseudomonas denitrificans]
Length = 261
Score = 73.0 bits (176), Expect = 3e-12
Identities = 64/247 (25%), Positives = 115/247 (45%), Gaps = 14/247 (5%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
+L FV + G + ++ G GGG + +P + + G+ +GT+ +F + S++ +Y
Sbjct: 8 LLAFLFVAAFIAGFIDSIAG-GGGMITIPAMLIAGIPPLQTLGTNKLQGLFGSGSATLSY 66
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA-YRMFRGKRGE 124
R+ + + + +A + GA LGA + + + LK I LI +A Y + G+
Sbjct: 67 ARRGHVNLKEQLPMALMSAAGAVLGALLATIVPGDVLKAILPFLLIAIALYFGLKPNMGD 126
Query: 125 RREEISVNE-----KLVPIGGFFSGIASGLLGVG-GGIINVPLLTWLGVPIHYAVATSSF 178
+ V LVP+ GF+ G+ G G G + +T G + A A + F
Sbjct: 127 VDQHSRVTPFVFTLTLVPLIGFYDGV----FGPGTGSFFMLGFVTLAGFGVLKATAHTKF 182
Query: 179 AIVFTSTSSAIKHYFLGNVELYWLPLLVP-GLIIGAQIGARIAKRTKASSLRKGFAVVML 237
+ F S A + L+ + LL+ G +GAQ+G+R A A ++ +V +
Sbjct: 183 -LNFGSNVGAFGVFLFFGAVLWKVGLLMGLGQFLGAQVGSRYAMAKGAKIIKPLLVIVSI 241
Query: 238 ILAIRMI 244
LAIR++
Sbjct: 242 ALAIRLL 248
>pir||D75343 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459640|gb|AAF11413.1|AE002026_1 (AE002026)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 250
Score = 72.6 bits (175), Expect = 4e-12
Identities = 59/246 (23%), Positives = 115/246 (45%), Gaps = 9/246 (3%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
+LL + G + A+ G GGG + +P L MG+ V T+ IF + S++ +
Sbjct: 6 VLLYGLPLAFLAGFIDAVAG-GGGTITLPTLFFMGLAPAQVVATNKLLAIFGSASATVQF 64
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKR-GE 124
R + + + L A+ G+ LGA++ F+ P K + G ++ V + KR G
Sbjct: 65 WRGGHVERALVLRLIPLALAGSALGAYLVRFVDPNTFKTLVGFVILGVGALVLANKRFGL 124
Query: 125 RREEISVNEKLVPI---GGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATSSFAIV 181
+ +++ + G F G+ G LG G G + L G + + ++ I
Sbjct: 125 EDRSPGLTPRVLALTLPGTFIIGMYDGFLGPGTGTFAMFLFALAGFNL-VRSSGNARTIN 183
Query: 182 FTSTSSAIKHYFLGNVELYW--LPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLIL 239
F + A + +G ++W LP+ V +GA +GAR+A ++ ++ + ++++++
Sbjct: 184 FATNLGAFIAFLIGGNMVWWIGLPMGVAN-ALGATLGARMAMLRGSAFVKWMYGLIVVLV 242
Query: 240 AIRMIL 245
A R+ L
Sbjct: 243 AARLFL 248
>pir||E83546 hypothetical protein PA0790 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946681|gb|AAG04179.1|AE004514_2
(AE004514) hypothetical protein [Pseudomonas aeruginosa]
Length = 271
Score = 71.4 bits (172), Expect = 1e-11
Identities = 63/244 (25%), Positives = 104/244 (41%), Gaps = 29/244 (11%)
Query: 8 LKAFVTGVVTGTLAAMFGLGGGFLLVPIL------------NLMGVEIHHAVGTSSASII 55
L F+ G +TG A +FG GGGF++VP+L L + AV TS+ +I
Sbjct: 4 LLLFLCGCLTGVSAVLFGFGGGFVVVPLLYHLLQLGRAADDPLAQAAMQVAVATSTCVMI 63
Query: 56 FTALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIF----GVTLI 111
A ++Y + R +L L + VGA LGA + S +++ F +T++
Sbjct: 64 VNAALATYRHRRAGSLLRAYVWPLGAYIGVGAVLGAALVGLASGDFIRLAFVAYLAITIL 123
Query: 112 FVAYRMFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGV---- 167
R R E R+ + +GG G + LGVGG ++ VPLL G+
Sbjct: 124 DCLLRRGFLSRAEERQARPLGVGETRLGGTLIGAIATFLGVGGSVMTVPLLRRCGLSMTQ 183
Query: 168 ------PIHYAVA---TSSFAIVFTSTSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGAR 218
P+ VA T ++ ++ + F+G ++L L G +G ++
Sbjct: 184 ATSMANPLSLPVALGGTLTYLVLAGYQEQGLGRGFVGYIDLLAFATLAGGGWLGIRLATP 243
Query: 219 IAKR 222
+ R
Sbjct: 244 LIGR 247
>sp|P44054|Y806_HAEIN HYPOTHETICAL PROTEIN HI0806 >gi|1074517|pir||I64013 hypothetical
protein HI0806 - Haemophilus influenzae (strain Rd KW20)
>gi|1573818|gb|AAC22465.1| (U32763) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 268
Score = 69.9 bits (168), Expect = 3e-11
Identities = 47/157 (29%), Positives = 84/157 (52%), Gaps = 6/157 (3%)
Query: 12 VTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAV--GTSSASIIFTALSSSYAYHRQK 69
+ G+ T ++A+FG+GGG L+VPIL + E+ V TS ++ TAL + +H+QK
Sbjct: 11 ICGICTNMVSAIFGIGGGVLMVPILRTLFPELPIQVISATSLTIVMCTALINLLFFHKQK 70
Query: 70 RILYRVGILLASTA-VVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGERREE 128
+ + ++L S A V+G +G ++ + S + +IF V+L +A + F + + E
Sbjct: 71 IKIDYINMILWSIAMVIGVQIGFELSFYFSTAIISLIFTVSLSALAIKTFLNRSRIQIEV 130
Query: 129 IS---VNEKLVPIGGFFSGIASGLLGVGGGIINVPLL 162
+ + I G+ +G+ G+GGG I PL+
Sbjct: 131 FNMSPIERAKGSISFCGGGLIAGITGIGGGSILAPLV 167
>pir||F72385 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980880|gb|AAD35463.1|AE001717_9 (AE001717)
conserved hypothetical protein [Thermotoga maritima]
Length = 241
Score = 69.5 bits (167), Expect = 4e-11
Identities = 61/241 (25%), Positives = 111/241 (45%), Gaps = 3/241 (1%)
Query: 6 ILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSSSYAY 65
+++ F+ G++ G L + G GG + +PIL +G+ I A GT+ +II L + +
Sbjct: 1 MIVLVFLGGILAGFLNVLAG-GGSMITLPILTALGLGIDVANGTNRIAIILQNLVAIERF 59
Query: 66 HRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVAYRMFRGKRGER 125
+K + + IL+A A+VGA LG+ + I L+ I GV + +A + R
Sbjct: 60 KAKKVLKIKEAILVALPAIVGAILGSSIAVQIEKEMLQKIVGVIFLVMAVSLVWKPRIWL 119
Query: 126 REE-ISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLT-WLGVPIHYAVATSSFAIVFT 183
+ + N L+ I F GI G + G G + +P + LG + A F +
Sbjct: 120 EDRFVKRNWVLIYIVFFLIGIYGGFIQAGVGFLLMPAIALLLGYELVKTNAVKVFIVASY 179
Query: 184 STSSAIKHYFLGNVELYWLPLLVPGLIIGAQIGARIAKRTKASSLRKGFAVVMLILAIRM 243
+ S + G V + +L G + GA + A + + A+ +R ++++ IR
Sbjct: 180 NIISLVIFILNGKVNFLYGFILALGNMTGAWLAATFSIKKGANWVRWIVFTAVIVVGIRY 239
Query: 244 I 244
+
Sbjct: 240 V 240
>pir||T44107 conserved hypothetical protein [imported] - Staphylococcus aureus
(fragment) >gi|5360839|dbj|BAA82209.1| (D86934) ORF
CN030 [Staphylococcus aureus]
Length = 214
Score = 69.1 bits (166), Expect = 5e-11
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 8/194 (4%)
Query: 2 IDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPIL----NLMGVEIHHAV---GTSSASI 54
+D A + + GV+ G ++ + G+GG ++ P + L+G+ + A G +S+ +
Sbjct: 1 MDIANMTIMLLIGVLGGFISGLIGIGGAIIIYPAILILPPLIGIPAYSAYIASGLTSSQV 60
Query: 55 IFTALSSSYAYHRQKRILYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA 114
F+ LS S +Q ++ I + ++G+ LGA + S + + ++ + I
Sbjct: 61 FFSTLSGSLNARKQPAFSPKLVIYMGGGMLIGSMLGAILASLFNATFVNTVYVIIAILAL 120
Query: 115 YRMFRGKRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVA 174
MF K +E L I GF G+ SG++G GG I +P+L L V
Sbjct: 121 ILMFI-KVKPTTQETKSKPLLFIIVGFGIGVISGIVGAGGAFIIIPVLLALFKLPMNTVV 179
Query: 175 TSSFAIVFTSTSSA 188
+S AI F S+ A
Sbjct: 180 NNSIAIAFISSVGA 193
>pir||B83419 conserved hypothetical protein PA1824 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947809|gb|AAG05213.1|AE004608_12 (AE004608)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 259
Score = 69.1 bits (166), Expect = 5e-11
Identities = 71/250 (28%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 2 IDTAILLKAFVTGVVTGTLAAMFGLGGGFLLVPILNLMGVEIHHAVGTSSASIIFTALSS 61
ID + L+ V + G + A+ G GGG L +P L GV H A+GT+ S F A ++
Sbjct: 7 IDPSTLIILAVVAFLAGFIDAIAG-GGGLLTIPALLTAGVPPHLALGTNKLSSTFGAATA 65
Query: 62 SYAYHRQKRI---LYRVGILLASTAVVGAYLGAWMTSFISPGKLKVIFGVTLIFVA-YRM 117
SY ++R+K +R G+L +GA +GAW + L + V + Y +
Sbjct: 66 SYTFYRRKLFHPGKWRNGLL---ATAIGAAIGAWAAHLLPAEWLNRMLPVVVFTCGLYML 122
Query: 118 FRG-KRGERREEISVNEKLVPIGGFFSGIASGLLGVGGGIINVPLLTWLGVPIHYAVATS 176
F G + + + K G G G+ G G G + + L P+ A+
Sbjct: 123 FGGTPKAPLDADAPLGRKRQWPQGLALGFYDGVAGPGTGAF-WTVSSLLMYPLDLVRASG 181
Query: 177 -SFAIVFTSTSSAIKHYFLGNVELYWLPLLVPG--LIIGAQIGARIAKRTKASSLRKGFA 233
+ ++ F S A+ F+ + ++ WL L G L++GA GAR A A +R F
Sbjct: 182 VARSMNFVSNIVALA-VFIASGQVIWLLGLCMGASLMVGAYFGARTAIGGGAKFIRPVFI 240
Query: 234 VVMLILAIRM 243
+V+L L R+
Sbjct: 241 LVVLALTARL 250
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.144 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85206423
Number of Sequences: 2977
Number of extensions: 3417761
Number of successful extensions: 12414
Number of sequences better than 1.0e-10: 49
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 12206
Number of HSP's gapped (non-prelim): 89
length of query: 253
length of database: 189,106,746
effective HSP length: 53
effective length of query: 200
effective length of database: 157,386,935
effective search space: 31477387000
effective search space used: 31477387000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)