BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1011 (PAB1011) DE:Hypothetical protein
         (265 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75067 hypothetical protein PAB1011 - Pyrococcus abyssi (st...   533  e-151
pir||H71164 hypothetical protein PH0517 - Pyrococcus horikoshii ...   410  e-113

>pir||G75067 hypothetical protein PAB1011 - Pyrococcus abyssi (strain Orsay)
           >gi|5458949|emb|CAB50436.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 265
           
 Score =  533 bits (1359), Expect = e-151
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MITPEEIAELVVQIRREHGLPVSPFEIDEIRYDKEEGKLFIIAHDRTDKSVIIGSSLVIG 60
           MITPEEIAELVVQIRREHGLPVSPFEIDEIRYDKEEGKLFIIAHDRTDKSVIIGSSLVIG
Sbjct: 1   MITPEEIAELVVQIRREHGLPVSPFEIDEIRYDKEEGKLFIIAHDRTDKSVIIGSSLVIG 60

Query: 61  KLREALGVKLVSVYTTLDLILKRRQLEESLRFAEEHGLNFLIPIIKAEMNFPPRKWPRIG 120
           KLREALGVKLVSVYTTLDLILKRRQLEESLRFAEEHGLNFLIPIIKAEMNFPPRKWPRIG
Sbjct: 61  KLREALGVKLVSVYTTLDLILKRRQLEESLRFAEEHGLNFLIPIIKAEMNFPPRKWPRIG 120

Query: 121 RKTHGMVFLTFNASAMLGFARAFNVQGNVYGVRYSFPKLSFTPVDRPVREVFFPNEDFLR 180
           RKTHGMVFLTFNASAMLGFARAFNVQGNVYGVRYSFPKLSFTPVDRPVREVFFPNEDFLR
Sbjct: 121 RKTHGMVFLTFNASAMLGFARAFNVQGNVYGVRYSFPKLSFTPVDRPVREVFFPNEDFLR 180

Query: 181 RLAKEDDAELVISEFTFPAKGEDVVMINPMRFLKIGYFETKYLFGESRPAIFSKEDLVNY 240
           RLAKEDDAELVISEFTFPAKGEDVVMINPMRFLKIGYFETKYLFGESRPAIFSKEDLVNY
Sbjct: 181 RLAKEDDAELVISEFTFPAKGEDVVMINPMRFLKIGYFETKYLFGESRPAIFSKEDLVNY 240

Query: 241 VISLVKDGLMEATDGARIIRWGWRR 265
           VISLVKDGLMEATDGARIIRWGWRR
Sbjct: 241 VISLVKDGLMEATDGARIIRWGWRR 265


>pir||H71164 hypothetical protein PH0517 - Pyrococcus horikoshii
           >gi|3256922|dbj|BAA29605.1| (AP000002) 256aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 256
           
 Score =  410 bits (1042), Expect = e-113
 Identities = 190/255 (74%), Positives = 228/255 (88%)

Query: 11  VVQIRREHGLPVSPFEIDEIRYDKEEGKLFIIAHDRTDKSVIIGSSLVIGKLREALGVKL 70
           +++IRREHGLP++PFEIDE+RYDKE  KLFIIAHDRTDKSV+IGSSLVIGKL+E L VKL
Sbjct: 1   MIKIRREHGLPITPFEIDEVRYDKEGEKLFIIAHDRTDKSVVIGSSLVIGKLKEELKVKL 60

Query: 71  VSVYTTLDLILKRRQLEESLRFAEEHGLNFLIPIIKAEMNFPPRKWPRIGRKTHGMVFLT 130
           VSVYTTLDL LKR QLE+SL FA+EH LNFLIPIIKAEM FPPRKWP +      ++FLT
Sbjct: 61  VSVYTTLDLTLKRMQLEKSLEFAKEHNLNFLIPIIKAEMKFPPRKWPEVKTNKEALIFLT 120

Query: 131 FNASAMLGFARAFNVQGNVYGVRYSFPKLSFTPVDRPVREVFFPNEDFLRRLAKEDDAEL 190
           FNA AM+GF+RAFN++G VYGV+YSFPKLS+TP+DRP+REVFFPNE+FL +LA E+  ++
Sbjct: 121 FNADAMIGFSRAFNLKGKVYGVKYSFPKLSYTPLDRPLREVFFPNEEFLNKLASENGIDI 180

Query: 191 VISEFTFPAKGEDVVMINPMRFLKIGYFETKYLFGESRPAIFSKEDLVNYVISLVKDGLM 250
           VISEF FP+K ED VMINPMRFL+IGYFE KYLFGESRPA+F+K DL++YV+++V++GLM
Sbjct: 181 VISEFEFPSKVEDSVMINPMRFLRIGYFEVKYLFGESRPAVFNKYDLIDYVVTMVEEGLM 240

Query: 251 EATDGARIIRWGWRR 265
           EATDGARIIRWGW+R
Sbjct: 241 EATDGARIIRWGWKR 255


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.143    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96699033
Number of Sequences: 2977
Number of extensions: 3957616
Number of successful extensions: 7307
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7305
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 189,106,746
effective HSP length: 53
effective length of query: 212
effective length of database: 157,386,935
effective search space: 33366030220
effective search space used: 33366030220
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)