BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1012 (PAB1012) DE:Hypothetical protein
(197 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75067 hypothetical protein PAB1012 - Pyrococcus abyssi (st... 395 e-109
pir||F71164 hypothetical protein PH0515 - Pyrococcus horikoshii ... 318 2e-86
gi|11498991 conserved hypothetical protein [Archaeoglobus fulgid... 73 2e-12
gb|AAK41303.1| Adenylate kinase related protein (adkA-like) [Sul... 70 2e-11
>pir||H75067 hypothetical protein PAB1012 - Pyrococcus abyssi (strain Orsay)
>gi|5458950|emb|CAB50437.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 197
Score = 395 bits (1003), Expect = e-109
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MGMEKMIVGIAGKIAAGKTTVAKFLEEFGFCRISCSEPLFDILTGNTQGYSWVPEVEFKG 60
MGMEKMIVGIAGKIAAGKTTVAKFLEEFGFCRISCSEPLFDILTGNTQGYSWVPEVEFKG
Sbjct: 1 MGMEKMIVGIAGKIAAGKTTVAKFLEEFGFCRISCSEPLFDILTGNTQGYSWVPEVEFKG 60
Query: 61 EPTRENLIELGRILKEKYGEDILIRLAVDKLRNCENIAIDGVRSMGEVDAIKRMGGIVVY 120
EPTRENLIELGRILKEKYGEDILIRLAVDKLRNCENIAIDGVRSMGEVDAIKRMGGIVVY
Sbjct: 61 EPTRENLIELGRILKEKYGEDILIRLAVDKLRNCENIAIDGVRSMGEVDAIKRMGGIVVY 120
Query: 121 IEAKPEIRFERLRRRGSSKDRGIKSLEDLLKFDEWEEKLYETTKIKEKADIVIVNEGTLE 180
IEAKPEIRFERLRRRGSSKDRGIKSLEDLLKFDEWEEKLYETTKIKEKADIVIVNEGTLE
Sbjct: 121 IEAKPEIRFERLRRRGSSKDRGIKSLEDLLKFDEWEEKLYETTKIKEKADIVIVNEGTLE 180
Query: 181 ELRDKIISALGLGKHVH 197
ELRDKIISALGLGKHVH
Sbjct: 181 ELRDKIISALGLGKHVH 197
>pir||F71164 hypothetical protein PH0515 - Pyrococcus horikoshii
>gi|3256920|dbj|BAA29603.1| (AP000002) 195aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 195
Score = 318 bits (807), Expect = 2e-86
Identities = 152/186 (81%), Positives = 171/186 (91%)
Query: 1 MGMEKMIVGIAGKIAAGKTTVAKFLEEFGFCRISCSEPLFDILTGNTQGYSWVPEVEFKG 60
MG+EK IVGIAGKIAAGKTTVAKFLEE GFCRISCSEPL DILTGN YSWVPEV FKG
Sbjct: 1 MGVEKTIVGIAGKIAAGKTTVAKFLEELGFCRISCSEPLLDILTGNVSEYSWVPEVNFKG 60
Query: 61 EPTRENLIELGRILKEKYGEDILIRLAVDKLRNCENIAIDGVRSMGEVDAIKRMGGIVVY 120
EPTRENLIELGR+LKEKYGEDILIRLA+DKLR C+NIAIDGVRS+GEV+AIKRMGGI++Y
Sbjct: 61 EPTRENLIELGRLLKEKYGEDILIRLAIDKLRRCKNIAIDGVRSLGEVEAIKRMGGIIIY 120
Query: 121 IEAKPEIRFERLRRRGSSKDRGIKSLEDLLKFDEWEEKLYETTKIKEKADIVIVNEGTLE 180
IEA+ E+RFERLR+R S KDRGIK+L+DLL+FDEWEE+LY TT IKEKAD VI+NEG+LE
Sbjct: 121 IEARAEVRFERLRKRCSEKDRGIKTLQDLLRFDEWEERLYSTTNIKEKADFVILNEGSLE 180
Query: 181 ELRDKI 186
EL+ K+
Sbjct: 181 ELKKKV 186
>gi|11498991 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483119|pir||B69424 conserved hypothetical protein
AF1395 - Archaeoglobus fulgidus
>gi|2649179|gb|AAB89852.1| (AE001008) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 323
Score = 73.4 bits (177), Expect = 2e-12
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 1 MGMEKMIVGIAGKIAAGKTTVAKFLEEFGFCRISCSEPLFDILTGNTQGYSWVPEVEFKG 60
M +E ++ G +GK+T A+ E G + + + + E +G
Sbjct: 1 MVLEMKVIAFVGYPLSGKSTAAEVARELGLPVVVMGDVVRE-------------EAARRG 47
Query: 61 -EPTRENLIELGRILKEKYGEDILIRLAVDKLRNCEN----IAIDGVRSMGEVDAIKRMG 115
E T ENL ++ R L+EK G D + + + K+R + +DG+R + EV+ K+
Sbjct: 48 LELTDENLGKVARELREKEGMDAIAKRCIPKIRELLKEHGVVVVDGIRGVAEVERFKKAF 107
Query: 116 G---IVVYIEAKPEIRFERLRRRGSSKDRGIKSLEDLLKFDEWEEKLYETTKIKEKADIV 172
G +++ IE E+RFER++ R S D + S+E+L + D EE + + E AD
Sbjct: 108 GDDFVLIAIECPLEVRFERVKMRKRSDD--VSSIEELKERDRREES-WGLKEAMEMADFT 164
Query: 173 IVNEGTLEELRDKI 186
+ N G+ E+ +KI
Sbjct: 165 VENTGSYEDFVEKI 178
>gb|AAK41303.1| Adenylate kinase related protein (adkA-like) [Sulfolobus
solfataricus]
Length = 188
Score = 70.2 bits (169), Expect = 2e-11
Identities = 59/182 (32%), Positives = 95/182 (51%), Gaps = 22/182 (12%)
Query: 7 IVGIAGKIAAGKTTVAKFLEEFGFCRISCSEPLFDILTGNTQGYSWVPEVEFKGEPTREN 66
++ I G +GK+ AK L+E G I S+ + + YS +E K E
Sbjct: 10 VILITGMPGSGKSEFAKLLKERGAKVIVMSDVV-------RKRYS----IEAK---PGER 55
Query: 67 LIELGRILKEKYGEDILIRLAVDKL--RNCENIAIDGVRSMGEVDAIKRMGGIVVYIEA- 123
L++ + L+E YG+ ++ RL V++L N + + DGVRS+ EV+ KR+ G VYI A
Sbjct: 56 LMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAV 115
Query: 124 --KPEIRFERLRRRGSSKDRGIKSLEDLLKFDEWEEKLYETTKIKEKADIVIVNEGTLEE 181
P+IR++R+ R S D K + +L++ D E KL ++ AD +I N+ EE
Sbjct: 116 HSPPKIRYKRMIERLRSDDS--KEISELIRRDREELKL-GIGEVIAMADYIITNDSNYEE 172
Query: 182 LR 183
+
Sbjct: 173 FK 174
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72531347
Number of Sequences: 2977
Number of extensions: 2996538
Number of successful extensions: 9563
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9556
Number of HSP's gapped (non-prelim): 4
length of query: 197
length of database: 189,106,746
effective HSP length: 54
effective length of query: 143
effective length of database: 156,788,448
effective search space: 22420748064
effective search space used: 22420748064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)