BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1013 (PAB1013) DE:Hypothetical protein
(313 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75068 hypothetical protein PAB1013 - Pyrococcus abyssi (st... 630 e-180
pir||C71164 hypothetical protein PH0512 - Pyrococcus horikoshii ... 594 e-169
pir||H64433 hypothetical protein MJ1073 - Methanococcus jannasch... 215 7e-55
pir||E72539 hypothetical protein APE1602 - Aeropyrum pernix (str... 194 9e-49
gb|AAG18794.1| (AE004984) Vng0179c [Halobacterium sp. NRC-1] 169 5e-41
gi|8922905 hypothetical protein FLJ11159 [Homo sapiens] >gi|7023... 160 2e-38
gi|11417190 hypothetical protein FLJ11159 [Homo sapiens] 160 2e-38
pir||T50318 conserved hypothetical protein SPBC1703.05 [imported... 146 2e-34
emb|CAB60851.1| (AL132877) predicted using Genefinder; prelimina... 140 2e-32
gb|AAF56435.1| (AE003751) CG11859 gene product [Drosophila melan... 140 2e-32
pir||T45758 hypothetical protein F24M12.310 - Arabidopsis thalia... 132 5e-30
gi|6324122 Ynl207wp [Saccharomyces cerevisiae] >gi|732189|sp|P40... 119 5e-26
gi|11500002 conserved hypothetical protein [Archaeoglobus fulgid... 113 2e-24
emb|CAC00804.1| (AL390935) probable cDNA flj11159 fis, clone pla... 113 4e-24
gb|AAK40542.1| Conserved hypothetical protein [Sulfolobus solfat... 104 1e-21
pir||C75179 hypothetical protein PAB0405 - Pyrococcus abyssi (st... 86 6e-16
pir||G71034 hypothetical protein PH1567 - Pyrococcus horikoshii ... 75 9e-13
gb|AAF50033.1| (AE003544) CG11660 gene product [Drosophila melan... 74 3e-12
pir||A69001 conserved hypothetical protein MTH1005 - Methanobact... 70 3e-11
gb|AAG20356.1| (AE005109) Vng2233c [Halobacterium sp. NRC-1] 70 4e-11
sp|P34649|YOT3_CAEEL HYPOTHETICAL 58.6 KD PROTEIN ZK632.3 IN CHR... 69 5e-11
>pir||B75068 hypothetical protein PAB1013 - Pyrococcus abyssi (strain Orsay)
>gi|5458952|emb|CAB50439.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 313
Score = 630 bits (1608), Expect = e-180
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MVSKLLALEAYPKLKDIDFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDD 60
MVSKLLALEAYPKLKDIDFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDD
Sbjct: 1 MVSKLLALEAYPKLKDIDFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDD 60
Query: 61 FGLVIRRSDMGYIGYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSG 120
FGLVIRRSDMGYIGYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSG
Sbjct: 61 FGLVIRRSDMGYIGYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSG 120
Query: 121 EKVAVKFNRIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPK 180
EKVAVKFNRIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPK
Sbjct: 121 EKVAVKFNRIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPK 180
Query: 181 PIAWNRHAIVMEFINGVELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFN 240
PIAWNRHAIVMEFINGVELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFN
Sbjct: 181 PIAWNRHAIVMEFINGVELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFN 240
Query: 241 VVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRFYEA 300
VVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRFYEA
Sbjct: 241 VVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRFYEA 300
Query: 301 WLIGRKEISEEQQ 313
WLIGRKEISEEQQ
Sbjct: 301 WLIGRKEISEEQQ 313
>pir||C71164 hypothetical protein PH0512 - Pyrococcus horikoshii
>gi|3256917|dbj|BAA29600.1| (AP000002) 313aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 313
Score = 594 bits (1516), Expect = e-169
Identities = 288/310 (92%), Positives = 305/310 (97%)
Query: 1 MVSKLLALEAYPKLKDIDFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDD 60
+VSKLLALEAYPKLKDIDFRLLRAVELKMRYY+WVPLEEIAKFARMD+ESASYRLGKLDD
Sbjct: 4 VVSKLLALEAYPKLKDIDFRLLRAVELKMRYYRWVPLEEIAKFARMDIESASYRLGKLDD 63
Query: 61 FGLVIRRSDMGYIGYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSG 120
FGLV+RRSDMGYIGYQLTIHGYDALAIR+FAKKG+IEAISTTQIGVGKDADVYVA+TPSG
Sbjct: 64 FGLVVRRSDMGYIGYQLTIHGYDALAIRSFAKKGIIEAISTTQIGVGKDADVYVALTPSG 123
Query: 121 EKVAVKFNRIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPK 180
EKVAVKFNRIGERTSARKA YHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPK
Sbjct: 124 EKVAVKFNRIGERTSARKAGYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPK 183
Query: 181 PIAWNRHAIVMEFINGVELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFN 240
PIAWNRHAIVME+I+GVELAELRD DLT EEA+EILGK+LDEYEKIVKFGIVHGDMSEFN
Sbjct: 184 PIAWNRHAIVMEYISGVELAELRDNDLTEEEAEEILGKILDEYEKIVKFGIVHGDMSEFN 243
Query: 241 VVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRFYEA 300
VVLT+DNDILIIDWAQY +CANPESLELLKRDITVLLNAFRRRWGVKR+FEEEW+RFYEA
Sbjct: 244 VVLTDDNDILIIDWAQYLTCANPESLELLKRDITVLLNAFRRRWGVKRDFEEEWERFYEA 303
Query: 301 WLIGRKEISE 310
WLIGRKE+ +
Sbjct: 304 WLIGRKEVED 313
>pir||H64433 hypothetical protein MJ1073 - Methanococcus jannaschii
>gi|1499920|gb|AAB99073.1| (U67550) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 270
Score = 215 bits (541), Expect = 7e-55
Identities = 110/255 (43%), Positives = 167/255 (65%), Gaps = 7/255 (2%)
Query: 29 MRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYIGYQLTIHGYDALAIR 88
MR+++WVPL+EI + A+M + YRL +L+ FG V+R + GY +++ GYDALAI
Sbjct: 1 MRHHEWVPLDEIVRKAKMPEKDVLYRLKRLNKFGFVVRST----YGYAVSMGGYDALAIN 56
Query: 89 AFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSARKAFYHSDVFAD 148
AF KKG+++AI ++GVGK+ DVY + G + +KF++ G RT + + AD
Sbjct: 57 AFVKKGILKAIGN-KLGVGKEGDVYTVLLSDGREAVLKFHKHG-RTCFTRGKRYRGYLAD 114
Query: 149 KHHKSWLYVSRLIAKKEHEALVLLSPFAKVPKPIAWNRHAIVMEFINGVELAELRDTD-L 207
KHH SWLYVSRL A++E E L L P KVP+PI WNRHAI+M + G EL L ++ +
Sbjct: 115 KHHISWLYVSRLTAEREFEILNELFPIVKVPEPIEWNRHAIIMGKVVGEELKRLDLSEFM 174
Query: 208 TREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQYQSCANPESLE 267
++EE ++ K+++E +K + G +HGD+SEFN++L E+ D +IIDW Q +P++
Sbjct: 175 SKEEIKDLFWKIIEEVKKAYEIGYIHGDLSEFNILLDENGDFVIIDWPQAVPKYHPDAEF 234
Query: 268 LLKRDITVLLNAFRR 282
LKRDI ++ F++
Sbjct: 235 YLKRDIWNVIRYFKK 249
>pir||E72539 hypothetical protein APE1602 - Aeropyrum pernix (strain K1)
>gi|5105289|dbj|BAA80602.1| (AP000062) 391aa long
hypothetical protein [Aeropyrum pernix]
Length = 391
Score = 194 bits (489), Expect = 9e-49
Identities = 115/280 (41%), Positives = 167/280 (59%), Gaps = 9/280 (3%)
Query: 11 YPKLKDIDFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDM 70
Y L + R+LRA+E MR Y++VP+E + + +R+ S + L LV RR +
Sbjct: 99 YTSLSGDELRVLRAIERWMRKYRYVPVELVERTSRLPPSRFSRAVKTLVTLKLVKRR--L 156
Query: 71 GYI-GYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNR 129
G + GY LT G D LAI +G++E + +IG+GK+ DVYVA++P+G K+ VK +R
Sbjct: 157 GSVSGYTLTYTGLDVLAIDNLRSRGIVEVLGD-KIGLGKEGDVYVAVSPAGSKLTVKLHR 215
Query: 130 IGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPF-AKVPKPIAWNRHA 188
G R S RK H D SWL VS+ +A++E + LV L A++P P+AWNRHA
Sbjct: 216 AG-RESFRKVRRHRSYALDLRPTSWLDVSKALAEREFKILVRLEEEGARIPSPVAWNRHA 274
Query: 189 IVMEFINGVELAELRDTDLTREEADEILGKVLDEYE-KIVKFGIVHGDMSEFNVVLTEDN 247
+V ++ GV LA++R D E A IL VL+ + G+VHGD+SE+NV+ T +
Sbjct: 275 VVQRYVEGVLLADVRVLDT--EAAASILRDVLETLRIAYTRVGVVHGDLSEYNVIATTEG 332
Query: 248 DILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRWGVK 287
++IDW QY P +LELL+RD+ +L FRRR G+K
Sbjct: 333 RGVVIDWPQYVYRDEPHALELLRRDVEYILKYFRRRAGLK 372
>gb|AAG18794.1| (AE004984) Vng0179c [Halobacterium sp. NRC-1]
Length = 300
Score = 169 bits (423), Expect = 5e-41
Identities = 98/267 (36%), Positives = 154/267 (56%), Gaps = 9/267 (3%)
Query: 18 DFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYIGYQL 77
DF LL VE MR+ +WV E++ +F+R+ + YRL ++ D + R++ + Y G QL
Sbjct: 16 DFHLLSGVEHGMRFSEWVSREKLPEFSRLTPQEVDYRLDRMLDREFLERKT-IQYEGVQL 74
Query: 78 TIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSAR 137
T GYD LA+ FA++ +E +GVGK++DVY S +A+KF+R G T R
Sbjct: 75 TFAGYDVLALHTFAERDSVEGFGAP-LGVGKESDVYEV--QSFRPMALKFHREGY-TQFR 130
Query: 138 KAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPKPIAWNRHAIVMEFINGV 197
+ D ++K H SW Y +R A++E++AL L P VP+P+ NRHAIVME ++G
Sbjct: 131 EVHRGRDYTSEKEHTSWQYTARKAAEREYDALEALYPTVNVPRPVDHNRHAIVMEKVSGT 190
Query: 198 ELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQY 257
EL+ + L E+A +L +L E + G VH D+SE+NV + D +++ DW Q
Sbjct: 191 ELSNAK---LNPEQASGVLDLILREVAAAYREGYVHADVSEYNVFVDSDG-VVLFDWPQA 246
Query: 258 QSCANPESLELLKRDITVLLNAFRRRW 284
+ + ELL RD+ ++ FR+++
Sbjct: 247 TPTDHENARELLARDVENIVQYFRQKY 273
>gi|8922905 hypothetical protein FLJ11159 [Homo sapiens]
>gi|7023651|dbj|BAA92040.1| (AK002021) unnamed protein
product [Homo sapiens]
Length = 552
Score = 160 bits (400), Expect = 2e-38
Identities = 94/268 (35%), Positives = 150/268 (55%), Gaps = 7/268 (2%)
Query: 18 DFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYIGYQL 77
DFR+L AVE+ M+ ++ VP IA A + + L +L L+ GY+L
Sbjct: 16 DFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHKLIAWERTKTVQGYRL 75
Query: 78 TIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSAR 137
T GYD LA++ + + V+E++ Q+GVGK++D+Y+ G++ A+K +R+G RTS R
Sbjct: 76 TNAGYDYLALKTLSSRQVVESVGN-QMGVGKESDIYIVANEEGQQFALKLHRLG-RTSFR 133
Query: 138 KAFYHSDVFADKHHKSWLYVSRLIAKKEHEAL-VLLSPFAKVPKPIAWNRHAIVMEFING 196
D +H+ SWLY+SRL A KE + L VPKPI +NRHA+VME ING
Sbjct: 134 NLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVVMELING 193
Query: 197 VELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQ 256
L ++ + DE + ++ K+ G++HGD +EFN++L E + I +ID+ Q
Sbjct: 194 YPLCQIHHVEDPASVYDEAMELIV----KLANHGLIHGDFNEFNLILDESDHITMIDFPQ 249
Query: 257 YQSCANPESLELLKRDITVLLNAFRRRW 284
S ++P + RD+ + + F +R+
Sbjct: 250 MVSTSHPNAEWYFDRDVKCIKDFFMKRF 277
>gi|11417190 hypothetical protein FLJ11159 [Homo sapiens]
Length = 552
Score = 160 bits (400), Expect = 2e-38
Identities = 94/268 (35%), Positives = 150/268 (55%), Gaps = 7/268 (2%)
Query: 18 DFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYIGYQL 77
DFR+L AVE+ M+ ++ VP IA A + + L +L L+ GY+L
Sbjct: 16 DFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHKLIAWERTKTVQGYRL 75
Query: 78 TIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSAR 137
T GYD LA++ + + V+E++ Q+GVGK++D+Y+ G++ A+K +R+G RTS R
Sbjct: 76 TNAGYDYLALKTLSSRQVVESVGN-QMGVGKESDIYIVANEEGQQFALKLHRLG-RTSFR 133
Query: 138 KAFYHSDVFADKHHKSWLYVSRLIAKKEHEAL-VLLSPFAKVPKPIAWNRHAIVMEFING 196
D +H+ SWLY+SRL A KE + L VPKPI +NRHA+VME ING
Sbjct: 134 NLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVVMELING 193
Query: 197 VELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQ 256
L ++ + DE + ++ K+ G++HGD +EFN++L E + I +ID+ Q
Sbjct: 194 YPLCQIHHVEDPASVYDEAMELIV----KLANHGLIHGDFNEFNLILDESDHITMIDFPQ 249
Query: 257 YQSCANPESLELLKRDITVLLNAFRRRW 284
S ++P + RD+ + + F +R+
Sbjct: 250 MVSTSHPNAEWYFDRDVKCIKDFFMKRF 277
>pir||T50318 conserved hypothetical protein SPBC1703.05 [imported] - fission
yeast (Schizosaccharomyces pombe)
>gi|6723919|emb|CAB66449.1| (AL136536) conserved
hypothetical protein [Schizosaccharomyces pombe]
Length = 336
Score = 146 bits (366), Expect = 2e-34
Identities = 90/279 (32%), Positives = 150/279 (53%), Gaps = 10/279 (3%)
Query: 18 DFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYIGYQL 77
DFR L AVE+ R ++ VP I + A++ S + L L L+ + + Y GY+L
Sbjct: 8 DFRTLTAVEMGSRNHEVVPTNMINQIAKIRGGSCTKSLSVLFMHKLIAKVPHISYEGYRL 67
Query: 78 TIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSAR 137
T GYD LA++A +K+ + ++ QIGVGK++DVYV G++ +K +R+G R S R
Sbjct: 68 TYAGYDYLALKALSKRASVYSVGN-QIGVGKESDVYVVGDQKGKQYILKIHRLG-RISFR 125
Query: 138 KAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFA-KVPKPIAWNRHAIVMEFING 196
+ D ++ SW Y+SRL A KE + +L VP PI +RH I+ME I+
Sbjct: 126 SVKNNRDYLRNRKTGSWQYLSRLAATKEFAFMKILHEHGFPVPAPIDHSRHCIIMEMIDA 185
Query: 197 VELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQ 256
L + D + + ++D + + G++HGD +EFN+++ ED ++ID+ Q
Sbjct: 186 FPLRAVTDI----RDPPALYQTLMDIIVRFARNGLIHGDFNEFNIIVREDGTAVVIDFPQ 241
Query: 257 YQSCANPESLELLKRDITVLLNAFRRRWGVK---RNFEE 292
S ++P++ RD+ ++ F + + K NFE+
Sbjct: 242 MVSTSHPDAQFYFDRDVQCIVQYFEKNYQYKGDVPNFED 280
>emb|CAB60851.1| (AL132877) predicted using Genefinder; preliminary prediction
[Caenorhabditis elegans]
Length = 550
Score = 140 bits (349), Expect = 2e-32
Identities = 97/324 (29%), Positives = 156/324 (47%), Gaps = 43/324 (13%)
Query: 19 FRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYI----- 73
FR+L AVE+ M+ ++ VPL ++ A + + L L LV ++
Sbjct: 17 FRVLIAVEMGMKNHEVVPLALVSAIAGIHRGGVARTLNDLCKHSLVAFERSKKFLSDKKF 76
Query: 74 ----------------------------GYQLTIHGYDALAIRAFAKKGVIEAISTTQIG 105
GY+LTI GYD LA+RA + V+ ++ QIG
Sbjct: 77 WLRLRDYKLQPFEPQPYRKLVVETEKFDGYRLTIRGYDYLALRALCSREVVGSVGN-QIG 135
Query: 106 VGKDADVYVAITPSGEKVAVKFNRIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKE 165
+GK++DVYV P + +KF+R+G RTS RK D + SWLY+SRL A KE
Sbjct: 136 IGKESDVYVGGDPELNDLCLKFHRLG-RTSFRKIKEKRDYHKKRKSASWLYLSRLAAAKE 194
Query: 166 HEALVLLSPFA-KVPKPIAWNRHAIVMEFINGVELAELRDTDLTREEADEILGKVLDEYE 224
L L VPK + RH +VM+ + G L + E+A + +++
Sbjct: 195 FAFLKALQERGFPVPKAVDVCRHLVVMQLVVGQTLCNVTHV----EDAGALYDRLMALIV 250
Query: 225 KIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRW 284
K+ + G++HGD +EFN+++ ED I++ID+ Q S +P + RD+T + F+R++
Sbjct: 251 KMARHGVIHGDFNEFNLIMLEDERIVMIDFPQMVSIDHPNAEYYFDRDVTCVRTFFKRKF 310
Query: 285 GVKRNFEEEWKRFYEAWLIGRKEI 308
+ E+W +F E G ++
Sbjct: 311 DYE---SEDWPKFDEVERKGNMDV 331
>gb|AAF56435.1| (AE003751) CG11859 gene product [Drosophila melanogaster]
Length = 538
Score = 140 bits (349), Expect = 2e-32
Identities = 81/281 (28%), Positives = 150/281 (52%), Gaps = 10/281 (3%)
Query: 18 DFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYIGYQL 77
DFR+L A+E+ M+ ++ VP A A + L +L L+ Y GY+L
Sbjct: 16 DFRVLTAIEMGMKNHELVPGPLAAAIANLKSGGVHKLLKELCKHKLLAYERGKKYDGYRL 75
Query: 78 TIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSAR 137
T GYD LA+++ +G + + QIG+GK++++YV G + +K +R+G RT R
Sbjct: 76 TNTGYDYLALKSLTLRGSVSSFGN-QIGIGKESNIYVVADEEGTPICLKLHRLG-RTCFR 133
Query: 138 KAFYHSDVFADKHHKSWLYVSRLIAKKEHEAL-VLLSPFAKVPKPIAWNRHAIVMEFING 196
D +H SWLY+SR+ A +E + L VPKPI +NRH ++M+ + G
Sbjct: 134 NVKAKRDYHGRRHKASWLYLSRISATREFAYMSALYDRGFPVPKPIDFNRHCVLMDLVKG 193
Query: 197 VELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQ 256
+ ++ + + D+++ ++ ++ G++HGD +EFN+++T+ ++ID+ Q
Sbjct: 194 WPMTQVHELLDAPQVYDDLMNLIV----RLGNSGVIHGDFNEFNLMVTDAGKPILIDFPQ 249
Query: 257 YQSCANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRF 297
S ++ + +RD+ + FRR++G + E++ +F
Sbjct: 250 MMSTSHENAEFFFERDVNCVREMFRRKFGYE---SEDYPKF 287
>pir||T45758 hypothetical protein F24M12.310 - Arabidopsis thaliana
>gi|6562279|emb|CAB62649.1| (AL132980) putative protein
[Arabidopsis thaliana]
Length = 472
Score = 132 bits (329), Expect = 5e-30
Identities = 86/287 (29%), Positives = 148/287 (50%), Gaps = 19/287 (6%)
Query: 18 DFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRSDMGYI---- 73
DFR+L AVE+ MR ++ VP E + + A + L L G +++ ++ I
Sbjct: 15 DFRVLTAVEMGMRNHEIVPSELVERIACLKHGGTYKVLKNLLKIGSLVKLQNLIAIAFFV 74
Query: 74 ------GYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKF 127
G++LT GYD LAI+ +G+ + QIGVGK++D++ G +A+K
Sbjct: 75 YICLDDGFRLTYLGYDFLAIKTLVNRGIFTGVGR-QIGVGKESDIFEVAQEDGTILAMKL 133
Query: 128 NRIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFA-KVPKPIAWNR 186
+R+G RTS R D + SWLY+SRL A KE + L VPK I NR
Sbjct: 134 HRLG-RTSFRAVKSKRDYLRHRSSFSWLYLSRLAALKEFAFMKALEEHDFPVPKAIDCNR 192
Query: 187 HAIVMEFINGVELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTED 246
H ++M + G + +++ ++I+G V+ ++ + G++H D +EFN+++ ++
Sbjct: 193 HCVIMSLVQGYPMVQVKQLQNPETIFEKIIGIVV----RLAEHGLIHCDFNEFNIMIDDE 248
Query: 247 NDILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRWGVKRNFEEE 293
I +ID+ Q S ++ + RDI + FR+R+ + +F E+
Sbjct: 249 EKITMIDFPQMVSVSHRNAQMYFDRDIECIFKFFRKRFNM--SFHED 293
>gi|6324122 Ynl207wp [Saccharomyces cerevisiae] >gi|732189|sp|P40160|YNU7_YEAST
HYPOTHETICAL 49.1 KD PROTEIN IN SSB2-SPX18 INTERGENIC
REGION >gi|2131922|pir||S50724 hypothetical protein
YNL207w - yeast (Saccharomyces cerevisiae)
>gi|600058|emb|CAA55501.1| (X78898) N1342 [Saccharomyces
cerevisiae] >gi|1302211|emb|CAA96109.1| (Z71483) ORF
YNL207w [Saccharomyces cerevisiae]
Length = 425
Score = 119 bits (295), Expect = 5e-26
Identities = 80/275 (29%), Positives = 148/275 (53%), Gaps = 15/275 (5%)
Query: 18 DFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYR-LGKLDDFGLVIRRSDMGYIGYQ 76
DFR+L+AVE R ++ VP I + + M +S + R + L L+ + ++ Y GY+
Sbjct: 15 DFRVLQAVEQGSRSHEVVPTPLIHQISGMRSQSGTNRAISDLAKLSLISKMRNVKYDGYR 74
Query: 77 LTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSA 136
LT +G D LA++ + + ++ T IGVGK++D+Y +G +K +R+G RTS
Sbjct: 75 LTYNGIDYLALKTMLNRDTVYSVGNT-IGVGKESDIYKVSDKNGNPRVMKIHRLG-RTSF 132
Query: 137 RKAFYHSDVFADKHH-KSWLYVSRLIAKKEHEALVLL-SPFAKVPKPIAWNRHAIVMEFI 194
+ D + +W+++SRL A KE++ + +L S KVP+P +RH +VME I
Sbjct: 133 HSVRNNRDYLKKSNQGANWMHLSRLAANKEYQFMSMLYSKGFKVPEPFDNSRHIVVMELI 192
Query: 195 NGVELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVV----LTEDND-- 248
G + LR + +++ ++D + G++H D +EFN++ L ++ND
Sbjct: 193 EGYPMRRLRKHKNIPKLYSDLMCFIVD----LANSGLIHCDFNEFNIMIKDKLEDENDCG 248
Query: 249 ILIIDWAQYQSCANPESLELLKRDITVLLNAFRRR 283
++ID+ Q S + ++ +RD+ + F+++
Sbjct: 249 FVVIDFPQCISIQHQDADYYFQRDVDCIRRFFKKK 283
>gi|11500002 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450007|pir||C69553 conserved hypothetical protein
AF2426 - Archaeoglobus fulgidus
>gi|2650662|gb|AAB91236.1| (AE001107) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 282
Score = 113 bits (281), Expect = 2e-24
Identities = 88/291 (30%), Positives = 143/291 (48%), Gaps = 14/291 (4%)
Query: 9 EAYPKLKDIDFRLLRAVELKMRYYKWVPLEEIAKFARMDVESASYRLGKLDDFGLVIRRS 68
E Y K+ +R++ A+ + Y++VPL+ I+ AR+ E A L L D +V R
Sbjct: 5 ELYGKMGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQ 64
Query: 69 DMGYIGYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFN 128
Y G T G ++ + G ++AI +G GK++ V+ + + VKF+
Sbjct: 65 K-DYEGSTFTFIGLSLYSLHRLVRSGKVDAIGKL-MGEGKESAVFNCYSEKFGECVVKFH 122
Query: 129 RIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPKPIAWNRHA 188
++G TS +K D + D H S A+ E AL L A VPK AW +A
Sbjct: 123 KVGH-TSFKKVKEKRD-YGDLHFSVLAIRS---ARNEFRALQKLQGLA-VPKVYAWEGNA 176
Query: 189 IVMEFINGVELAELRDTDLTREEADEILGKVLDEYEKIVKFGIVHGDMSEFNVVLTEDND 248
++ME I+ EL +R E DE+L +L+E K GIVHGD+S++NV+++E+
Sbjct: 177 VLMELIDAKELYRVRV-----ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG- 230
Query: 249 ILIIDWAQYQSCANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRFYE 299
I IID+ Q E+L+RD+ ++ F R + +++ R +
Sbjct: 231 IWIIDFPQSVEVGEEGWREILERDVRNIITYFSRTYRTEKDINSAIDRILQ 281
>emb|CAC00804.1| (AL390935) probable cDNA flj11159 fis, clone place1006966
[Leishmania major]
Length = 193
Score = 113 bits (279), Expect = 4e-24
Identities = 63/186 (33%), Positives = 108/186 (57%), Gaps = 9/186 (4%)
Query: 105 GVGKDADVYVAITPSGEKVAVKFNRIGE---RTSARKAFYHSDVFADKHHKSWLYVSRLI 161
G GK++D+ + +G + +K R+G R+ AR Y + A +H +SW Y+SRL
Sbjct: 9 GCGKESDIILVRDEAGHECVLKLQRLGRCSFRSVARNRDYKGNGRA-RHGESWFYLSRLA 67
Query: 162 AKKEHEALVLLSPFA-KVPKPIAWNRHAIVMEFINGVELAELRDTDLTREEADEILGKVL 220
++KE+ + +L VPKPI NRHA++ME + G L + + +A ++ + L
Sbjct: 68 SQKEYSFMKMLYDEGFPVPKPIDQNRHALLMELVPGTLLNNITELG----DASKVYRRAL 123
Query: 221 DEYEKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLNAF 280
+ K+ + G++HGD +EFN+++T+D +++ID+ Q S +P + EL RD+ L N F
Sbjct: 124 ELMVKLAESGLIHGDFNEFNLMITDDQRVIMIDFPQMISINHPNASELFDRDVQNLANFF 183
Query: 281 RRRWGV 286
RR+ V
Sbjct: 184 HRRFKV 189
>gb|AAK40542.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 287
Score = 104 bits (257), Expect = 1e-21
Identities = 82/285 (28%), Positives = 145/285 (50%), Gaps = 21/285 (7%)
Query: 4 KLLALEAYPKLKDIDFRLLRAVELKMRYYKWVPLEEIAKFARMDV---ESASYRLGKLDD 60
+L E ++ D+ LL+ + ++V + K R+D+ E L KL +
Sbjct: 2 RLSLAEKASLVRPFDYILLKTIYGLRDKSEFVSFNALKK--RLDIKDDEELKISLKKLSE 59
Query: 61 FGLVIRRSDMGYIGYQLTIHGYDALAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSG 120
L+ ++ + ++LT G D L I+ ++ ++ IG+GK++ VY +
Sbjct: 60 LKLISKKPTD--LSFKLTFSGLDILGIKLLYVNKILNRLAEI-IGIGKESLVYYGYDFND 116
Query: 121 EKVAVKFNRIGERTSARKAFYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLS-PFAKVP 179
K+ VKF+R+G + + F S + KSWL ++ AK+E EAL LS VP
Sbjct: 117 NKIIVKFHRVGTDSYKKVKFRKS-----QEKKSWLSITVENAKREFEALTCLSNEGGYVP 171
Query: 180 KPIAWNRHAIVMEFINGVELAELRDTDLTREEADEILGKVLDEYEKIVKF-GIVHGDMSE 238
KP+ +A+ ME+I+G+EL ++ T++ DEIL K+L I HGD+S
Sbjct: 172 KPLGVEYNAVAMEYIDGIELYKIPVTNMDLN-LDEILEKILQTMRIAYTICHITHGDLSP 230
Query: 239 FNVVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLNAFRRR 283
+NV++ ++ + +IDW Q +S E L++D++ L+ FR++
Sbjct: 231 YNVLIDKNGNPYLIDWPQ-----ATKSEERLEKDLSNLIIFFRKK 270
>pir||C75179 hypothetical protein PAB0405 - Pyrococcus abyssi (strain Orsay)
>gi|5458024|emb|CAB49514.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 266
Score = 85.8 bits (209), Expect = 6e-16
Identities = 69/225 (30%), Positives = 122/225 (53%), Gaps = 13/225 (5%)
Query: 87 IRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSARKAFYH--SD 144
I F ++G+IE + + GK+A+V+ GEK+AVK R T R+ + + +D
Sbjct: 40 ISYFYRRGIIERLYGV-LSTGKEANVFAGYNSKGEKIAVKIYRT-YTTEFRRIWEYLAAD 97
Query: 145 VFADKHHKSWLYVSRLIAKKEHEALVLLSPFA-KVPKPIAWNRHAIVMEFI-NGVELAEL 202
K + + ++E++ L +A + P+PIA+ + +VMEFI + + L
Sbjct: 98 PRIGALPKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRL 157
Query: 203 RDTD--LTREEADEILGKVLDEYEKIVKFG-IVHGDMSEFNVVLTEDNDILIIDWAQYQS 259
+D + L +E+ +E+ ++ EK+ K G +VHGD+SE+N++L + +IIDW+Q
Sbjct: 158 KDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWHEP--VIIDWSQATV 215
Query: 260 CANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRFY--EAWL 302
N SL LL RDI ++N F+R+ + EE+++ E W+
Sbjct: 216 KRNRMSLTLLYRDIRNVINYFKRKGIDVEDPEEKFRELAGDELWM 260
>pir||G71034 hypothetical protein PH1567 - Pyrococcus horikoshii
>gi|3257996|dbj|BAA30679.1| (AP000006) 266aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 266
Score = 75.3 bits (182), Expect = 9e-13
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)
Query: 87 IRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSARKAFYHSDVF 146
I F ++G IE + + GK+A+V+ +G K+AVK R T R+ + + +
Sbjct: 40 ITYFYRRGKIERLYGV-LSTGKEANVFAGYDSNGNKIAVKIYRT-YTTEFRRIWEY--LA 95
Query: 147 ADKHHKSWLYVSRLIA----KKEHEALVLLSPFA-KVPKPIAWNRHAIVMEFI-NGVELA 200
AD S R + ++E++ L +A + P+PIA+ + ++MEFI + +
Sbjct: 96 ADPRIGSLPRDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNILIMEFIGDDLPAP 155
Query: 201 ELRDTDLTREEAD--EILGKVLDEYEKIVKFG-IVHGDMSEFNVVLTEDNDILIIDWAQY 257
L+D + E+ D E+ + EK+ K G +VHGD+SE+N+++ + +IIDW+Q
Sbjct: 156 RLKDVEKELEKGDFEELYDFAMRSIEKLWKRGDMVHGDLSEYNILIWHEP--VIIDWSQA 213
Query: 258 QSCANPESLELLKRDITVLLNAFRRR 283
N SL LL RDI + N F R+
Sbjct: 214 TVKRNRMSLTLLYRDIRNITNYFARK 239
>gb|AAF50033.1| (AE003544) CG11660 gene product [Drosophila melanogaster]
Length = 585
Score = 73.7 bits (178), Expect = 3e-12
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 10/199 (5%)
Query: 93 KGVIEAISTTQIGVGKDADVYVAITPSGEK-VAVKFNRIGERTSARKAFYHSDVFADKH- 150
+G+I+ I+ I GK+A+VY A++ +GE+ A+K + + Y S F +H
Sbjct: 199 RGMIQEINGC-ISTGKEANVYHAVSKNGEEEFAIKIYKTSILVFKDRDKYVSGEFRFRHG 257
Query: 151 ---HKSWLYVSRLIAKKEHEALVLLSPFAKVPKPIAWNRHAIVMEFI--NGVELAELRDT 205
H V K+ L + + VP+PI H +VM F +G +L+D
Sbjct: 258 YCKHNPRKMVRTWAEKEMRNYLRMRNAGVPVPEPILLRSHVLVMRFCGRDGWPAPKLKDV 317
Query: 206 DLTREEADEILGKVLDEYEKIV-KFGIVHGDMSEFNVVLTEDNDILIIDWAQYQSCANPE 264
+L+ +A E+ + +I + +VH D+SEFN++L +D ++IID +Q +P
Sbjct: 318 ELSTSKARELYRDCVVIMWRIYNQCRLVHADLSEFNILL-QDGQLVIIDVSQSVEHDHPH 376
Query: 265 SLELLKRDITVLLNAFRRR 283
S + L++D T + FR+R
Sbjct: 377 SFDFLRKDCTNISEFFRKR 395
>pir||A69001 conserved hypothetical protein MTH1005 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622106|gb|AAB85501.1| (AE000873) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 273
Score = 70.2 bits (169), Expect = 3e-11
Identities = 58/209 (27%), Positives = 101/209 (47%), Gaps = 12/209 (5%)
Query: 82 YDALAIRAF---AKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSARK 138
+D L ++ A G + A+ + GK+A+V+ IT + + VAVK R+ +
Sbjct: 52 FDELTLKTLYKLANSGYL-AVLNGAVSTGKEANVFKGITDTDDFVAVKIYRVATSDFKKM 110
Query: 139 AFY--HSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFAKVPKPIAWNRHAIVMEFI-- 194
+Y F + V + K+ L +VP+P+ + ++MEFI
Sbjct: 111 QYYIQGDPRFKVRTTNRRQLVQAWVNKEFRNLKRALEAGVRVPEPVTARDNVLIMEFIGK 170
Query: 195 NGVELAELRDTDLTREEADEILGKVLDEYEKIVKFG-IVHGDMSEFNVVLTEDNDILIID 253
+GV +RD E+ +E L +++ ++ K +VHGD+S FN +L + +IID
Sbjct: 171 DGVPAPTMRDA--PPEDPEEALETIIEYMHRLYKGARLVHGDLSFFN-ILNHCGEPVIID 227
Query: 254 WAQYQSCANPESLELLKRDITVLLNAFRR 282
+Q +P + ELL+RDI ++ FRR
Sbjct: 228 VSQAMVLDHPLAGELLERDIENIIRDFRR 256
>gb|AAG20356.1| (AE005109) Vng2233c [Halobacterium sp. NRC-1]
Length = 231
Score = 69.9 bits (168), Expect = 4e-11
Identities = 58/185 (31%), Positives = 91/185 (48%), Gaps = 9/185 (4%)
Query: 104 IGVGKDADVYVAITPSGEKVAVKFNRIGERTSAR-KAFYHSDVFADKHHKSWLYVSRLIA 162
I GK+A+VY A+ G VA+K RI + +A+ D + V
Sbjct: 5 ISTGKEANVYEALDAEGGDVALKVYRINASNFQQMRAYLEGDPRFEGLRGDKKAVVLSWT 64
Query: 163 KKEHEALVLLSPFA-KVPKPIAWNRHAIVMEFIN--GVELAELRDTDLTREEADEILGKV 219
+KE L +VP P+A R+ +VME I G L D D+ E ++ +V
Sbjct: 65 RKEFSNLRRAKAAGVRVPAPLAVQRNVLVMELIGREGDAAPTLSDVDI---ENPQMAYEV 121
Query: 220 LDEY-EKIVKFGIVHGDMSEFNVVLTEDNDILIIDWAQYQSCANPESLELLKRDITVLLN 278
+ EY ++ G+VHGD+SE+NVV+ E ++++ID Q + +P S L+RD + N
Sbjct: 122 VREYVRRLYDAGLVHGDLSEYNVVVYE-GELVVIDVGQAVTIHHPNSATFLERDCRNVAN 180
Query: 279 AFRRR 283
F R+
Sbjct: 181 FFARQ 185
>sp|P34649|YOT3_CAEEL HYPOTHETICAL 58.6 KD PROTEIN ZK632.3 IN CHROMOSOME III
>gi|482171|pir||S40935 hypothetical protein ZK632.3 -
Caenorhabditis elegans >gi|3881694|emb|CAA80180.1|
(Z22181) contains similarity to Pfam domain: PF01163
(RIO1/ZK632.3/MJ0444 family), Score=486.2,
E-value=8.3e-143, N=1~cDNA EST EMBL:M89162 comes from
this gene~cDNA EST yk377c11.3 comes from this gene~cDNA
EST yk377c11.5 comes from this gene~cDNA EST y>
Length = 510
Score = 69.5 bits (167), Expect = 5e-11
Identities = 59/208 (28%), Positives = 102/208 (48%), Gaps = 17/208 (8%)
Query: 85 LAIRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSARKAFYHSD 144
L + + +GV +++ I GK++ V A S A+K + ++ Y D
Sbjct: 235 LLLLKWINQGVFDSVDGI-IATGKESAVLHAAQDSATSYAIKVYKTTLSEFKNRSEYVKD 293
Query: 145 VFADKHHKSWLYVSRLIAKKEHEALVLLSPFAK----VPKPIAWNRHAIVMEFINGVELA 200
F K+ + V ++ A++E + LS AK P+P+ R+ +VM F+ LA
Sbjct: 294 DFRFKNPRG---VLKIWAERE---FMNLSRMAKHGLPCPQPVKVRRNVLVMSFLGDQGLA 347
Query: 201 ELRDTDLTREE-ADEILGKVLDEYEKIV-----KFGIVHGDMSEFNVVLTEDNDILIIDW 254
R ++ E D+ V D+ + I+ + +VH D+SEFN++LT DN + +ID
Sbjct: 348 APRLKNVEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDV 407
Query: 255 AQYQSCANPESLELLKRDITVLLNAFRR 282
+Q ++P SL+ L RDI ++ F R
Sbjct: 408 SQAMDLSHPRSLQFLTRDIQNIITFFTR 435
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.138 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113413047
Number of Sequences: 2977
Number of extensions: 4589992
Number of successful extensions: 12786
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 12712
Number of HSP's gapped (non-prelim): 22
length of query: 313
length of database: 189,106,746
effective HSP length: 55
effective length of query: 258
effective length of database: 156,189,961
effective search space: 40297009938
effective search space used: 40297009938
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)