BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1019 (PAB1019) DE:Hypothetical protein
         (149 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75001 hypothetical protein PAB1019 - Pyrococcus abyssi (st...   289  1e-77
pir||G71162 hypothetical protein PH0500 - Pyrococcus horikoshii ...   232  1e-60
pir||E71117 hypothetical protein PH0708 - Pyrococcus horikoshii ...   116  1e-25
pir||F75141 hypothetical protein PAB1741 - Pyrococcus abyssi (st...   107  6e-23

>pir||B75001 hypothetical protein PAB1019 - Pyrococcus abyssi (strain Orsay)
           >gi|5458962|emb|CAB50448.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 149
           
 Score =  289 bits (732), Expect = 1e-77
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MPLPPDITFDSVTLLKMHSEKNKRLLEITLAKFTVYLSMLTVQRYLTARAYLKRNVELEF 60
           MPLPPDITFDSVTLLKMHSEKNKRLLEITLAKFTVYLSMLTVQRYLTARAYLKRNVELEF
Sbjct: 1   MPLPPDITFDSVTLLKMHSEKNKRLLEITLAKFTVYLSMLTVQRYLTARAYLKRNVELEF 60

Query: 61  EVLKDIYNIVPVSEEIILRASKIEANLIRKGVFLDLEDIITAVTAIETGSLLITDEPKKY 120
           EVLKDIYNIVPVSEEIILRASKIEANLIRKGVFLDLEDIITAVTAIETGSLLITDEPKKY
Sbjct: 61  EVLKDIYNIVPVSEEIILRASKIEANLIRKGVFLDLEDIITAVTAIETGSLLITDEPKKY 120

Query: 121 EPIRRFGLDTMPLDKFLREVELMVEKEII 149
           EPIRRFGLDTMPLDKFLREVELMVEKEII
Sbjct: 121 EPIRRFGLDTMPLDKFLREVELMVEKEII 149


>pir||G71162 hypothetical protein PH0500 - Pyrococcus horikoshii
           >gi|3256905|dbj|BAA29588.1| (AP000002) 149aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 149
           
 Score =  232 bits (586), Expect = 1e-60
 Identities = 110/149 (73%), Positives = 136/149 (90%)

Query: 1   MPLPPDITFDSVTLLKMHSEKNKRLLEITLAKFTVYLSMLTVQRYLTARAYLKRNVELEF 60
           MPLPPDITFDS+ L+KMHS+  KR+LE+TLAKFTV LS++TV RYLTARAYLK+N+E EF
Sbjct: 1   MPLPPDITFDSLALIKMHSQNMKRILEVTLAKFTVNLSIVTVYRYLTARAYLKKNIEAEF 60

Query: 61  EVLKDIYNIVPVSEEIILRASKIEANLIRKGVFLDLEDIITAVTAIETGSLLITDEPKKY 120
           E+LKDIYNIVP+ ++I ++A++IEANLI+K + LD+EDIITA TAI T SLL+TD+PK+Y
Sbjct: 61  EILKDIYNIVPLLDDIAIKAAQIEANLIKKEITLDMEDIITATTAIYTNSLLVTDDPKRY 120

Query: 121 EPIRRFGLDTMPLDKFLREVELMVEKEII 149
           EPIRRFGLDTMPLDKF++EVELMVEKE+I
Sbjct: 121 EPIRRFGLDTMPLDKFIKEVELMVEKELI 149


>pir||E71117 hypothetical protein PH0708 - Pyrococcus horikoshii
           >gi|3257116|dbj|BAA29799.1| (AP000003) 156aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 156
           
 Score =  116 bits (288), Expect = 1e-25
 Identities = 58/147 (39%), Positives = 100/147 (67%), Gaps = 1/147 (0%)

Query: 2   PLPPDITFDSVTLLKMHSEKNKRLLEITLAKFTVYLSMLTVQRYLTARAYLKRNVELEFE 61
           P+   I FD  + +++  ++NK LLE  LA+F +YL + TV  YL A+++  ++ + E +
Sbjct: 3   PMLRKICFDPSSFIQLTRKQNKELLEFVLAEFEIYLPITTVHAYLLAKSFKGKDPKKEVQ 62

Query: 62  VLKDIYNIVPVSEEIILRASKIEANLIRKGVFLDLEDIITAVTAIETGSLL-ITDEPKKY 120
            L+ I  IV ++++++   ++I+A+LI+ G FL LED+ITAV+AI + SLL ++   +KY
Sbjct: 63  KLRGIVRIVDLTDDLLGEIAEIDASLIKDGYFLSLEDLITAVSAIASKSLLVVSGNAEKY 122

Query: 121 EPIRRFGLDTMPLDKFLREVELMVEKE 147
            P+R++GLD +  DKFL EVE++  +E
Sbjct: 123 SPLRKYGLDCVNYDKFLEEVEVLAREE 149


>pir||F75141 hypothetical protein PAB1741 - Pyrococcus abyssi (strain Orsay)
           >gi|5458358|emb|CAB49847.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 156
           
 Score =  107 bits (265), Expect = 6e-23
 Identities = 52/147 (35%), Positives = 95/147 (64%), Gaps = 2/147 (1%)

Query: 3   LPPDITFDSVTLLKMHSEKNKRLLEITLAKFTVYLSMLTVQRYLTARAYLKRNVELEFEV 62
           LP  I+F  ++ LK+  ++NK +LE  LA+F V+L +  V  YL  +  L R+++ E ++
Sbjct: 4   LPERISFGPISFLKITRKQNKEILEFILAEFQVFLPLPAVNSYLMTKGLLGRDIDEEIKI 63

Query: 63  LKDIYNIVPVSEEIILRASKIEANLIRKGVFLDLEDIITAVTAIETGSLLITDEP--KKY 120
           L++++ IV VS+++I + +++   L+++G+  +  D+ITA +AI T SLL+ ++   K Y
Sbjct: 64  LREVFTIVEVSDQLIRKMAELGGALVKEGIVPNFSDLITAASAIITESLLVVNDKKVKDY 123

Query: 121 EPIRRFGLDTMPLDKFLREVELMVEKE 147
           E   ++GLD +   KFL E+E + E+E
Sbjct: 124 EIFSKYGLDVISYTKFLEEIESLAEEE 150


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.377 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47573137
Number of Sequences: 2977
Number of extensions: 1687756
Number of successful extensions: 4307
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4301
Number of HSP's gapped (non-prelim): 4
length of query: 149
length of database: 189,106,746
effective HSP length: 56
effective length of query: 93
effective length of database: 155,591,474
effective search space: 14470007082
effective search space used: 14470007082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)