BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1020 (PAB1020) DE:Hypothetical protein
         (382 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75001 hypothetical protein PAB1020 - Pyrococcus abyssi (st...   768  0.0
pir||E71162 hypothetical protein PH0498 - Pyrococcus horikoshii ...   640  0.0
pir||D70395 conserved hypothetical protein aq_1106 - Aquifex aeo...   261  7e-69
gi|11498455 conserved hypothetical protein [Archaeoglobus fulgid...   201  9e-51
sp|Q57857|Y414_METJA HYPOTHETICAL PROTEIN MJ0414 >gi|2128305|pir...   195  6e-49
pir||B69030 conserved hypothetical protein MTH1221 - Methanobact...   194  1e-48
pir||B72535 hypothetical protein APE1567 - Aeropyrum pernix (str...   163  3e-39

>pir||D75001 hypothetical protein PAB1020 - Pyrococcus abyssi (strain Orsay)
           >gi|5458964|emb|CAB50450.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 382
           
 Score =  768 bits (1962), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVID 60
           MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVID
Sbjct: 1   MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVID 60

Query: 61  EEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFIC 120
           EEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFIC
Sbjct: 61  EEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFIC 120

Query: 121 PFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTG 180
           PFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTG
Sbjct: 121 PFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTG 180

Query: 181 RSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIV 240
           RSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIV
Sbjct: 181 RSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIV 240

Query: 241 KYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALL 300
           KYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALL
Sbjct: 241 KYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALL 300

Query: 301 QPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITF 360
           QPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITF
Sbjct: 301 QPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITF 360

Query: 361 KRLYPDATNEIRELIGGKAFVD 382
           KRLYPDATNEIRELIGGKAFVD
Sbjct: 361 KRLYPDATNEIRELIGGKAFVD 382


>pir||E71162 hypothetical protein PH0498 - Pyrococcus horikoshii
           >gi|3256903|dbj|BAA29586.1| (AP000002) 379aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 379
           
 Score =  640 bits (1633), Expect = 0.0
 Identities = 299/379 (78%), Positives = 355/379 (92%)

Query: 4   VVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVIDEEY 63
           +VSS +K+IL +LG+ E ++E LE +GG++ED+FD I+Y+R ++S GKLRRGTVV+++++
Sbjct: 1   MVSSKFKDILYRLGIPEGKVEDLEARGGLVEDKFDDIKYLRIRNSVGKLRRGTVVLNDKF 60

Query: 64  VIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFT 123
           +I GFPHIKRI+NL++GI+R FKRGEFYVEEKVDGYNVRVV ++GK+LGITRGGFICPFT
Sbjct: 61  IILGFPHIKRIVNLKNGIKRTFKRGEFYVEEKVDGYNVRVVKFRGKILGITRGGFICPFT 120

Query: 124 TERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTGRSL 183
           TERI DF+P+EFFKD+PNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFD+QE+ TGRSL
Sbjct: 121 TERISDFIPEEFFKDHPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDIQELGTGRSL 180

Query: 184 PVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIVKYV 243
           PVEERLKIAEEYGI+HVEVFGK+T  D++E+Y+++ERLS+EGREGI+MKSPDM+K+VKYV
Sbjct: 181 PVEERLKIAEEYGISHVEVFGKFTYKDLEEIYEIVERLSREGREGIVMKSPDMRKMVKYV 240

Query: 244 TPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPF 303
           TPYANINDIKIGARVFYELPPGYFTSRISRLAFY+AEKR++GE FE +AKELG ALLQP 
Sbjct: 241 TPYANINDIKIGARVFYELPPGYFTSRISRLAFYIAEKRLRGENFEELAKELGKALLQPL 300

Query: 304 VESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKRL 363
           VESI DVEQE++I E+FKVRVK+IETAYKMVTHFEKLGL+IEIVDIEE+K GWRITFKRL
Sbjct: 301 VESIHDVEQEDEIAEVFKVRVKKIETAYKMVTHFEKLGLRIEIVDIEEMKGGWRITFKRL 360

Query: 364 YPDATNEIRELIGGKAFVD 382
           YPDAT EIRELIGGK+FVD
Sbjct: 361 YPDATEEIRELIGGKSFVD 379


>pir||D70395 conserved hypothetical protein aq_1106 - Aquifex aeolicus
           >gi|2983583|gb|AAC07155.1| (AE000723) hypothetical
           protein [Aquifex aeolicus]
           Length = 367
           
 Score =  261 bits (661), Expect = 7e-69
 Identities = 132/364 (36%), Positives = 222/364 (60%), Gaps = 10/364 (2%)

Query: 24  ETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVIDEEYVIPGFPHIKRIINLRSGIRR 83
           E L+ K    E+ F G+ Y+RF D    + RGT +  ++++I G+PHI RI  L +G+R 
Sbjct: 9   EALKKKKVRSEEAF-GLEYLRFNDDYKDIPRGTAIF-KDFIIWGYPHIGRIFLLETGLRE 66

Query: 84  IFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKDNPNLI 143
            F+   F+VEEKVDGYN R+  Y      ++RGGFICPFTT+R+PD +      +NP+L+
Sbjct: 67  QFE-APFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDENPDLV 125

Query: 144 LVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVF 203
           +  E+AGPE+PY+ E PPYVKED+Q F+FD  +      L  EE++++ E+Y + HVE+ 
Sbjct: 126 ICAEVAGPENPYIEESPPYVKEDVQLFVFDFMKKNEQGFLSQEEKMELIEKYNLPHVEIL 185

Query: 204 GKYT--KDDVDELYQLIERLSKEGREGIIMK-SPDMKKIVKYVTPYANINDIKIGARVFY 260
           G++T  ++ + ++ ++++R ++EGREG++ K   +  K  KY+T YAN+ DIK  A+   
Sbjct: 186 GRFTASEEGIKKIKEILKRFNEEGREGVVFKEDSERNKRAKYITSYANLMDIKTNAKNML 245

Query: 261 ELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPFVESIFDVEQEEDIHELF 320
           +LPP Y+T+RI RL  ++ E+ +K    E + +ELG A +    ++I   E+E  +++ F
Sbjct: 246 QLPPEYYTNRILRLVLFMYEEGLK--TTEHLYEELGRAFIDGLFQAIEQFEKEHKVYKTF 303

Query: 321 KVRVKRIETAYKMVTHFEKLGLKIEIVD--IEEIKDGWRITFKRLYPDATNEIRELIGGK 378
             + ++ E A  ++    K    I++ +  +E+  D WR+ F +++ + T  +  L+ G 
Sbjct: 304 TCKFRKKENAIALLELLSKTSKHIQVKERRLEKEGDYWRLEFDKVFLNMTGLLGHLLSGG 363

Query: 379 AFVD 382
              D
Sbjct: 364 IVYD 367


>gi|11498455 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7429870|pir||A69356 conserved hypothetical protein
           AF0849 - Archaeoglobus fulgidus
           >gi|2649752|gb|AAB90388.1| (AE001045) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 378
           
 Score =  201 bits (507), Expect = 9e-51
 Identities = 119/341 (34%), Positives = 187/341 (53%), Gaps = 9/341 (2%)

Query: 44  RFKDSAGKLRRGTVVI---DEEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYN 100
           RF+   G+   GT+VI   D   V  GFP I+R + L   I++ F   E  +EEK++GYN
Sbjct: 42  RFEKKFGQYEEGTIVIKAKDSLKVFRGFPKIRRALLLDPTIKKHFGDREVVLEEKMNGYN 101

Query: 101 VRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGP 160
           VR+V     +  ITR G ICP+TTE+    +  EFF+D P+ +L  E  G  SPY V   
Sbjct: 102 VRIVKVGDNLYAITRRGLICPYTTEKARTLIDDEFFRDYPDYMLCCEAVGRASPY-VPTD 160

Query: 161 PYVKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIER 220
            Y  E ++FFLFDV+E KT + + ++E+ +IAE+YG    E+    + DDV  + +++E+
Sbjct: 161 VYGIETLEFFLFDVREGKTNQPVTIDEKKEIAEKYGFRLAEILETVSSDDVARIKEVVEK 220

Query: 221 LSKEGREGIIMKSPDM-KKIVKYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLA 279
           L+K  REG++ K  +M    +KY T YAN +D++   R F E    +  SR+ R AF   
Sbjct: 221 LNKNRREGVVFKDREMVLNPLKYTTSYANQSDLRYAFRFFGEYGRDFMLSRVIREAFQSF 280

Query: 280 EKRIKGEEFERVAKELGSALLQPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEK 339
           E     E+F +    LG A+L+P +ESI + ++ E + E  ++  +  +       H + 
Sbjct: 281 EFEEGEEDFNQRCLRLGRAILEPMIESIRECKRGEMVCEESELVFESPDVLELFKLHMKL 340

Query: 340 LGLKIEIVDIEEIKDGWRITFKRLYPDATNEIRELIGGKAF 380
           LG+   I    E+ DG R+  KR+    ++ IR ++ G  +
Sbjct: 341 LGVDFRI----EVLDGGRVKLKRIMRSTSDRIRGILQGSTW 377


>sp|Q57857|Y414_METJA HYPOTHETICAL PROTEIN MJ0414 >gi|2128305|pir||F64351 hypothetical
           protein MJ0414 - Methanococcus jannaschii
           >gi|1499205|gb|AAB98403.1| (U67493) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 395
           
 Score =  195 bits (491), Expect = 6e-49
 Identities = 125/391 (31%), Positives = 211/391 (52%), Gaps = 18/391 (4%)

Query: 1   MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVI- 59
           M +V +    +I  KL L+   +     +  + EDE+  I+ + FK     + +GTV+  
Sbjct: 5   MMKVSAYDLNKIAEKLNLSIKDLNKAFSRKILREDEYKEIKTLLFKKEFKGIEKGTVIFL 64

Query: 60  -DEEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGF 118
            D   V+ G+P   R I L   I++ F   +  +EEK++GYN+R+V   G++  +TR G+
Sbjct: 65  NDNLDVVRGYPKTYRAITLYPTIKKHFI-DKVVIEEKLNGYNIRIVKIDGEVYALTRSGY 123

Query: 119 ICPFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVK------EDIQFFLF 172
           ICPFTT+++  F+  E   D    +L GEM G  +PY    P Y K      E++ F++F
Sbjct: 124 ICPFTTKKVKKFLNLEILDDYSEYMLCGEMIGINNPYT---PYYYKEVDRGFENLGFYIF 180

Query: 173 DVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVD-ELYQLIERLSKEGREGIIM 231
           D++E +T +SLP++ER+ + E+Y + +V+      KD+    + ++IE+L+KEGREG+++
Sbjct: 181 DIKERETNKSLPIKERINLCEKYNLPYVKPLAVVDKDEAHIHVREIIEKLNKEGREGVVL 240

Query: 232 KSPDMK-KIVKYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFER 290
           K PDM    +KY T Y    D+K     F++L   +  SR+ R  F   E +   EE + 
Sbjct: 241 KDPDMAVSPIKYTTHYTQCEDLKSAFTFFFDLGMDFLFSRVVREGFMSYEFKETLEERKN 300

Query: 291 VAKELGSALLQPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIE 350
            AK+LG A+L P VE+I  V   E + E F++     E   + +    K+ + I I +IE
Sbjct: 301 RAKDLGEAILLPMVETINKVASGERVSEDFELIFDSEEDFDEFLDFMRKMKMVITIKNIE 360

Query: 351 EI--KDGWRI--TFKRLYPDATNEIRELIGG 377
           +I  ++G +I     ++Y    ++I   + G
Sbjct: 361 KIDTEEGVKIKAVIGKIYNKTNDKIISYLNG 391


>pir||B69030 conserved hypothetical protein MTH1221 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622332|gb|AAB85710.1| (AE000890) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 381
           
 Score =  194 bits (489), Expect = 1e-48
 Identities = 121/369 (32%), Positives = 198/369 (52%), Gaps = 12/369 (3%)

Query: 15  KLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVI--DEEYVIPGFPHIK 72
           + G+   R++    +G +   E  G++ + FK   G L  GTV+   DE  VI GFP I+
Sbjct: 16  RTGVPSSRLKVAFARGSLRLLESAGMQALLFKKPLGDLEAGTVIYLGDETEVIRGFPKIR 75

Query: 73  RIINLRSGIRRIFKRGEFYVEEKVDGYNVRVV-MYKGKMLGITRGGFICPFTTERIPDFV 131
           R + L   I+  F R    VEEK++GYNVR+  +  G+ + +TRGG +CPFTT +  + +
Sbjct: 76  RTLLLSPTIQEHF-RDRVAVEEKMNGYNVRIACLSSGETVALTRGGHVCPFTTRKAQELL 134

Query: 132 P-QEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTGRSLPVEERLK 190
              EFF+++P+L++ GEM G ++PY+ +  P V   + F +FD++E  T R LPVEER  
Sbjct: 135 DLSEFFREHPDLVICGEMIGRDNPYVSQDYPEVGP-LGFRVFDLREKNTNRPLPVEERRA 193

Query: 191 IAEEYGINHVEVFGKYTKDDV-DELYQLIERLSKEGREGIIMKSPDMK-KIVKYVTPYAN 248
           + + YG+ +V +FG Y  ++   E+  +I  L   GREG++MK P M+   +KY +  A+
Sbjct: 194 LLDSYGLPNVRLFGVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLKYTSSQAH 253

Query: 249 INDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPFVESIF 308
             ++       ++    +F SR+ R  F   E     +E    A+ LG A++ P +E I 
Sbjct: 254 ARELAYAFSYPFDFGRPFFFSRVIREGFQAYELDESDDETRERARRLGEAIIYPMLERIK 313

Query: 309 DVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKRLYPDAT 368
            +   E  +E   + V+  E A + + H  +LG+   + D    +DG R T +R Y   T
Sbjct: 314 SISAGEAAYEDTVIDVEDREAAEEFIRHLVRLGVSATLAD---YRDG-RATIRRFYQSTT 369

Query: 369 NEIRELIGG 377
           + I   + G
Sbjct: 370 DRINNYLKG 378


>pir||B72535 hypothetical protein APE1567 - Aeropyrum pernix (strain K1)
           >gi|5105254|dbj|BAA80567.1| (AP000062) 369aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 369
           
 Score =  163 bits (408), Expect = 3e-39
 Identities = 113/354 (31%), Positives = 178/354 (49%), Gaps = 26/354 (7%)

Query: 23  IETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVI---DEEYVIPGFPHIKRIINLRS 79
           +E L  +  +    F+ + YV F+     +  GT+V     E+ V+ G+P IKR++  R 
Sbjct: 8   LEALSTRRSVRVSRFEDVVYVGFRRQFRGVPEGTLVAFRRGEQIVVWGYPSIKRMLLPRV 67

Query: 80  GIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDF---VPQEFF 136
            + R F      VEEK++GYNVRV    G +   TRGG ICP+TT R+        Q+  
Sbjct: 68  AVPRWFPGPTVLVEEKMNGYNVRVFTLGGMVYAATRGGLICPYTTRRLRRLYGGALQKIL 127

Query: 137 KD--NPNLILVGEMAGPESPYLVEGPPYVKED---IQFFLFDVQEIKTGRSLPVEERLKI 191
           +D       + GE+ G E+PY      Y  E+     +F+FD+   K GR LP   +  +
Sbjct: 128 EDLGAEGSFIAGEVVGLENPY----TRYYYEEAPGFGYFIFDI--FKGGRQLPPRVKFSL 181

Query: 192 AEEYGINHVEVFGKY--TKDDVDELYQLIERLSKEGREGIIMKSPDMK-KIVKYVTPYAN 248
           A EYG+  V +  +   T   V+ LY ++E L K GREG+I+K P+ + + +KY T   N
Sbjct: 182 APEYGLKTVNLLAEIPATASGVERLYTIVEDLEKRGREGVIVKDPEGRVEPLKYTTSRTN 241

Query: 249 INDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPFVESIF 308
           I DI++G R  +E    +   RI R  F       + E   R   ELG A+L P +E++ 
Sbjct: 242 IGDIRLGMRYPFEEGRSFLFPRILREIFR------EWETGRRRYGELGEAILAPAIEAVE 295

Query: 309 DVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKR 362
            V +   + E F++       A +++ +F  LG+ +EI  +    DG R+ F++
Sbjct: 296 AVSRGGRLVEEFELVFANEVEAEEVIAYFASLGVHLEIAGVARGVDGVRVAFRK 349


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.144    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143452463
Number of Sequences: 2977
Number of extensions: 6422342
Number of successful extensions: 16139
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16113
Number of HSP's gapped (non-prelim): 7
length of query: 382
length of database: 189,106,746
effective HSP length: 55
effective length of query: 327
effective length of database: 156,189,961
effective search space: 51074117247
effective search space used: 51074117247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)