BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1020 (PAB1020) DE:Hypothetical protein
(382 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75001 hypothetical protein PAB1020 - Pyrococcus abyssi (st... 768 0.0
pir||E71162 hypothetical protein PH0498 - Pyrococcus horikoshii ... 640 0.0
pir||D70395 conserved hypothetical protein aq_1106 - Aquifex aeo... 261 7e-69
gi|11498455 conserved hypothetical protein [Archaeoglobus fulgid... 201 9e-51
sp|Q57857|Y414_METJA HYPOTHETICAL PROTEIN MJ0414 >gi|2128305|pir... 195 6e-49
pir||B69030 conserved hypothetical protein MTH1221 - Methanobact... 194 1e-48
pir||B72535 hypothetical protein APE1567 - Aeropyrum pernix (str... 163 3e-39
>pir||D75001 hypothetical protein PAB1020 - Pyrococcus abyssi (strain Orsay)
>gi|5458964|emb|CAB50450.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 382
Score = 768 bits (1962), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVID 60
MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVID
Sbjct: 1 MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVID 60
Query: 61 EEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFIC 120
EEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFIC
Sbjct: 61 EEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFIC 120
Query: 121 PFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTG 180
PFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTG
Sbjct: 121 PFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTG 180
Query: 181 RSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIV 240
RSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIV
Sbjct: 181 RSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIV 240
Query: 241 KYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALL 300
KYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALL
Sbjct: 241 KYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALL 300
Query: 301 QPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITF 360
QPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITF
Sbjct: 301 QPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITF 360
Query: 361 KRLYPDATNEIRELIGGKAFVD 382
KRLYPDATNEIRELIGGKAFVD
Sbjct: 361 KRLYPDATNEIRELIGGKAFVD 382
>pir||E71162 hypothetical protein PH0498 - Pyrococcus horikoshii
>gi|3256903|dbj|BAA29586.1| (AP000002) 379aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 379
Score = 640 bits (1633), Expect = 0.0
Identities = 299/379 (78%), Positives = 355/379 (92%)
Query: 4 VVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVIDEEY 63
+VSS +K+IL +LG+ E ++E LE +GG++ED+FD I+Y+R ++S GKLRRGTVV+++++
Sbjct: 1 MVSSKFKDILYRLGIPEGKVEDLEARGGLVEDKFDDIKYLRIRNSVGKLRRGTVVLNDKF 60
Query: 64 VIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFT 123
+I GFPHIKRI+NL++GI+R FKRGEFYVEEKVDGYNVRVV ++GK+LGITRGGFICPFT
Sbjct: 61 IILGFPHIKRIVNLKNGIKRTFKRGEFYVEEKVDGYNVRVVKFRGKILGITRGGFICPFT 120
Query: 124 TERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTGRSL 183
TERI DF+P+EFFKD+PNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFD+QE+ TGRSL
Sbjct: 121 TERISDFIPEEFFKDHPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDIQELGTGRSL 180
Query: 184 PVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPDMKKIVKYV 243
PVEERLKIAEEYGI+HVEVFGK+T D++E+Y+++ERLS+EGREGI+MKSPDM+K+VKYV
Sbjct: 181 PVEERLKIAEEYGISHVEVFGKFTYKDLEEIYEIVERLSREGREGIVMKSPDMRKMVKYV 240
Query: 244 TPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPF 303
TPYANINDIKIGARVFYELPPGYFTSRISRLAFY+AEKR++GE FE +AKELG ALLQP
Sbjct: 241 TPYANINDIKIGARVFYELPPGYFTSRISRLAFYIAEKRLRGENFEELAKELGKALLQPL 300
Query: 304 VESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKRL 363
VESI DVEQE++I E+FKVRVK+IETAYKMVTHFEKLGL+IEIVDIEE+K GWRITFKRL
Sbjct: 301 VESIHDVEQEDEIAEVFKVRVKKIETAYKMVTHFEKLGLRIEIVDIEEMKGGWRITFKRL 360
Query: 364 YPDATNEIRELIGGKAFVD 382
YPDAT EIRELIGGK+FVD
Sbjct: 361 YPDATEEIRELIGGKSFVD 379
>pir||D70395 conserved hypothetical protein aq_1106 - Aquifex aeolicus
>gi|2983583|gb|AAC07155.1| (AE000723) hypothetical
protein [Aquifex aeolicus]
Length = 367
Score = 261 bits (661), Expect = 7e-69
Identities = 132/364 (36%), Positives = 222/364 (60%), Gaps = 10/364 (2%)
Query: 24 ETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVIDEEYVIPGFPHIKRIINLRSGIRR 83
E L+ K E+ F G+ Y+RF D + RGT + ++++I G+PHI RI L +G+R
Sbjct: 9 EALKKKKVRSEEAF-GLEYLRFNDDYKDIPRGTAIF-KDFIIWGYPHIGRIFLLETGLRE 66
Query: 84 IFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKDNPNLI 143
F+ F+VEEKVDGYN R+ Y ++RGGFICPFTT+R+PD + +NP+L+
Sbjct: 67 QFE-APFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDENPDLV 125
Query: 144 LVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVF 203
+ E+AGPE+PY+ E PPYVKED+Q F+FD + L EE++++ E+Y + HVE+
Sbjct: 126 ICAEVAGPENPYIEESPPYVKEDVQLFVFDFMKKNEQGFLSQEEKMELIEKYNLPHVEIL 185
Query: 204 GKYT--KDDVDELYQLIERLSKEGREGIIMK-SPDMKKIVKYVTPYANINDIKIGARVFY 260
G++T ++ + ++ ++++R ++EGREG++ K + K KY+T YAN+ DIK A+
Sbjct: 186 GRFTASEEGIKKIKEILKRFNEEGREGVVFKEDSERNKRAKYITSYANLMDIKTNAKNML 245
Query: 261 ELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPFVESIFDVEQEEDIHELF 320
+LPP Y+T+RI RL ++ E+ +K E + +ELG A + ++I E+E +++ F
Sbjct: 246 QLPPEYYTNRILRLVLFMYEEGLK--TTEHLYEELGRAFIDGLFQAIEQFEKEHKVYKTF 303
Query: 321 KVRVKRIETAYKMVTHFEKLGLKIEIVD--IEEIKDGWRITFKRLYPDATNEIRELIGGK 378
+ ++ E A ++ K I++ + +E+ D WR+ F +++ + T + L+ G
Sbjct: 304 TCKFRKKENAIALLELLSKTSKHIQVKERRLEKEGDYWRLEFDKVFLNMTGLLGHLLSGG 363
Query: 379 AFVD 382
D
Sbjct: 364 IVYD 367
>gi|11498455 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429870|pir||A69356 conserved hypothetical protein
AF0849 - Archaeoglobus fulgidus
>gi|2649752|gb|AAB90388.1| (AE001045) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 378
Score = 201 bits (507), Expect = 9e-51
Identities = 119/341 (34%), Positives = 187/341 (53%), Gaps = 9/341 (2%)
Query: 44 RFKDSAGKLRRGTVVI---DEEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYN 100
RF+ G+ GT+VI D V GFP I+R + L I++ F E +EEK++GYN
Sbjct: 42 RFEKKFGQYEEGTIVIKAKDSLKVFRGFPKIRRALLLDPTIKKHFGDREVVLEEKMNGYN 101
Query: 101 VRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGP 160
VR+V + ITR G ICP+TTE+ + EFF+D P+ +L E G SPY V
Sbjct: 102 VRIVKVGDNLYAITRRGLICPYTTEKARTLIDDEFFRDYPDYMLCCEAVGRASPY-VPTD 160
Query: 161 PYVKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIER 220
Y E ++FFLFDV+E KT + + ++E+ +IAE+YG E+ + DDV + +++E+
Sbjct: 161 VYGIETLEFFLFDVREGKTNQPVTIDEKKEIAEKYGFRLAEILETVSSDDVARIKEVVEK 220
Query: 221 LSKEGREGIIMKSPDM-KKIVKYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLA 279
L+K REG++ K +M +KY T YAN +D++ R F E + SR+ R AF
Sbjct: 221 LNKNRREGVVFKDREMVLNPLKYTTSYANQSDLRYAFRFFGEYGRDFMLSRVIREAFQSF 280
Query: 280 EKRIKGEEFERVAKELGSALLQPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEK 339
E E+F + LG A+L+P +ESI + ++ E + E ++ + + H +
Sbjct: 281 EFEEGEEDFNQRCLRLGRAILEPMIESIRECKRGEMVCEESELVFESPDVLELFKLHMKL 340
Query: 340 LGLKIEIVDIEEIKDGWRITFKRLYPDATNEIRELIGGKAF 380
LG+ I E+ DG R+ KR+ ++ IR ++ G +
Sbjct: 341 LGVDFRI----EVLDGGRVKLKRIMRSTSDRIRGILQGSTW 377
>sp|Q57857|Y414_METJA HYPOTHETICAL PROTEIN MJ0414 >gi|2128305|pir||F64351 hypothetical
protein MJ0414 - Methanococcus jannaschii
>gi|1499205|gb|AAB98403.1| (U67493) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 395
Score = 195 bits (491), Expect = 6e-49
Identities = 125/391 (31%), Positives = 211/391 (52%), Gaps = 18/391 (4%)
Query: 1 MKEVVSSVYKEILVKLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVI- 59
M +V + +I KL L+ + + + EDE+ I+ + FK + +GTV+
Sbjct: 5 MMKVSAYDLNKIAEKLNLSIKDLNKAFSRKILREDEYKEIKTLLFKKEFKGIEKGTVIFL 64
Query: 60 -DEEYVIPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGF 118
D V+ G+P R I L I++ F + +EEK++GYN+R+V G++ +TR G+
Sbjct: 65 NDNLDVVRGYPKTYRAITLYPTIKKHFI-DKVVIEEKLNGYNIRIVKIDGEVYALTRSGY 123
Query: 119 ICPFTTERIPDFVPQEFFKDNPNLILVGEMAGPESPYLVEGPPYVK------EDIQFFLF 172
ICPFTT+++ F+ E D +L GEM G +PY P Y K E++ F++F
Sbjct: 124 ICPFTTKKVKKFLNLEILDDYSEYMLCGEMIGINNPYT---PYYYKEVDRGFENLGFYIF 180
Query: 173 DVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVD-ELYQLIERLSKEGREGIIM 231
D++E +T +SLP++ER+ + E+Y + +V+ KD+ + ++IE+L+KEGREG+++
Sbjct: 181 DIKERETNKSLPIKERINLCEKYNLPYVKPLAVVDKDEAHIHVREIIEKLNKEGREGVVL 240
Query: 232 KSPDMK-KIVKYVTPYANINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFER 290
K PDM +KY T Y D+K F++L + SR+ R F E + EE +
Sbjct: 241 KDPDMAVSPIKYTTHYTQCEDLKSAFTFFFDLGMDFLFSRVVREGFMSYEFKETLEERKN 300
Query: 291 VAKELGSALLQPFVESIFDVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIE 350
AK+LG A+L P VE+I V E + E F++ E + + K+ + I I +IE
Sbjct: 301 RAKDLGEAILLPMVETINKVASGERVSEDFELIFDSEEDFDEFLDFMRKMKMVITIKNIE 360
Query: 351 EI--KDGWRI--TFKRLYPDATNEIRELIGG 377
+I ++G +I ++Y ++I + G
Sbjct: 361 KIDTEEGVKIKAVIGKIYNKTNDKIISYLNG 391
>pir||B69030 conserved hypothetical protein MTH1221 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622332|gb|AAB85710.1| (AE000890) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 381
Score = 194 bits (489), Expect = 1e-48
Identities = 121/369 (32%), Positives = 198/369 (52%), Gaps = 12/369 (3%)
Query: 15 KLGLTEDRIETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVI--DEEYVIPGFPHIK 72
+ G+ R++ +G + E G++ + FK G L GTV+ DE VI GFP I+
Sbjct: 16 RTGVPSSRLKVAFARGSLRLLESAGMQALLFKKPLGDLEAGTVIYLGDETEVIRGFPKIR 75
Query: 73 RIINLRSGIRRIFKRGEFYVEEKVDGYNVRVV-MYKGKMLGITRGGFICPFTTERIPDFV 131
R + L I+ F R VEEK++GYNVR+ + G+ + +TRGG +CPFTT + + +
Sbjct: 76 RTLLLSPTIQEHF-RDRVAVEEKMNGYNVRIACLSSGETVALTRGGHVCPFTTRKAQELL 134
Query: 132 P-QEFFKDNPNLILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTGRSLPVEERLK 190
EFF+++P+L++ GEM G ++PY+ + P V + F +FD++E T R LPVEER
Sbjct: 135 DLSEFFREHPDLVICGEMIGRDNPYVSQDYPEVGP-LGFRVFDLREKNTNRPLPVEERRA 193
Query: 191 IAEEYGINHVEVFGKYTKDDV-DELYQLIERLSKEGREGIIMKSPDMK-KIVKYVTPYAN 248
+ + YG+ +V +FG Y ++ E+ +I L GREG++MK P M+ +KY + A+
Sbjct: 194 LLDSYGLPNVRLFGVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLKYTSSQAH 253
Query: 249 INDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPFVESIF 308
++ ++ +F SR+ R F E +E A+ LG A++ P +E I
Sbjct: 254 ARELAYAFSYPFDFGRPFFFSRVIREGFQAYELDESDDETRERARRLGEAIIYPMLERIK 313
Query: 309 DVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKRLYPDAT 368
+ E +E + V+ E A + + H +LG+ + D +DG R T +R Y T
Sbjct: 314 SISAGEAAYEDTVIDVEDREAAEEFIRHLVRLGVSATLAD---YRDG-RATIRRFYQSTT 369
Query: 369 NEIRELIGG 377
+ I + G
Sbjct: 370 DRINNYLKG 378
>pir||B72535 hypothetical protein APE1567 - Aeropyrum pernix (strain K1)
>gi|5105254|dbj|BAA80567.1| (AP000062) 369aa long
hypothetical protein [Aeropyrum pernix]
Length = 369
Score = 163 bits (408), Expect = 3e-39
Identities = 113/354 (31%), Positives = 178/354 (49%), Gaps = 26/354 (7%)
Query: 23 IETLEMKGGIIEDEFDGIRYVRFKDSAGKLRRGTVVI---DEEYVIPGFPHIKRIINLRS 79
+E L + + F+ + YV F+ + GT+V E+ V+ G+P IKR++ R
Sbjct: 8 LEALSTRRSVRVSRFEDVVYVGFRRQFRGVPEGTLVAFRRGEQIVVWGYPSIKRMLLPRV 67
Query: 80 GIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDF---VPQEFF 136
+ R F VEEK++GYNVRV G + TRGG ICP+TT R+ Q+
Sbjct: 68 AVPRWFPGPTVLVEEKMNGYNVRVFTLGGMVYAATRGGLICPYTTRRLRRLYGGALQKIL 127
Query: 137 KD--NPNLILVGEMAGPESPYLVEGPPYVKED---IQFFLFDVQEIKTGRSLPVEERLKI 191
+D + GE+ G E+PY Y E+ +F+FD+ K GR LP + +
Sbjct: 128 EDLGAEGSFIAGEVVGLENPY----TRYYYEEAPGFGYFIFDI--FKGGRQLPPRVKFSL 181
Query: 192 AEEYGINHVEVFGKY--TKDDVDELYQLIERLSKEGREGIIMKSPDMK-KIVKYVTPYAN 248
A EYG+ V + + T V+ LY ++E L K GREG+I+K P+ + + +KY T N
Sbjct: 182 APEYGLKTVNLLAEIPATASGVERLYTIVEDLEKRGREGVIVKDPEGRVEPLKYTTSRTN 241
Query: 249 INDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQPFVESIF 308
I DI++G R +E + RI R F + E R ELG A+L P +E++
Sbjct: 242 IGDIRLGMRYPFEEGRSFLFPRILREIFR------EWETGRRRYGELGEAILAPAIEAVE 295
Query: 309 DVEQEEDIHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKR 362
V + + E F++ A +++ +F LG+ +EI + DG R+ F++
Sbjct: 296 AVSRGGRLVEEFELVFANEVEAEEVIAYFASLGVHLEIAGVARGVDGVRVAFRK 349
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.144 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143452463
Number of Sequences: 2977
Number of extensions: 6422342
Number of successful extensions: 16139
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16113
Number of HSP's gapped (non-prelim): 7
length of query: 382
length of database: 189,106,746
effective HSP length: 55
effective length of query: 327
effective length of database: 156,189,961
effective search space: 51074117247
effective search space used: 51074117247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)