BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1021 (PAB1021) DE:Hypothetical protein
(435 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75001 hypothetical protein PAB1021 - Pyrococcus abyssi (st... 850 0.0
pir||B71162 hypothetical protein PH0495 - Pyrococcus horikoshii ... 733 0.0
pir||A72236 hypothetical protein TM1585 - Thermotoga maritima (s... 333 2e-90
pir||D72697 hypothetical protein APE0996 - Aeropyrum pernix (str... 295 7e-79
sp|Q44472|TUD4_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|8052... 263 2e-69
pir||E83459 conserved hypothetical protein PA1499 [imported] - P... 252 4e-66
sp|P70788|TUD3_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|9843... 243 3e-63
gb|AAB66496.1| (U87316) putative glycerate kinase [Methylobacter... 238 7e-62
gb|AAK40970.1| Glycerate kinase, putative [Sulfolobus solfataricus] 222 8e-57
emb|CAB57636.1| (Y18930) hypothetical protein [Sulfolobus solfat... 222 8e-57
emb|CAC11595.1| (AL445064) glycerate kinase related protein [The... 180 3e-44
gb|AAF51252.1| (AE003583) CG9886 gene product [Drosophila melano... 176 5e-43
sp|Q09235|YQ42_CAEEL HYPOTHETICAL 40.0 KD PROTEIN C13B9.2 IN CHR... 127 2e-28
>pir||E75001 hypothetical protein PAB1021 - Pyrococcus abyssi (strain Orsay)
>gi|5458965|emb|CAB50451.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 435
Score = 850 bits (2173), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60
MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR
Sbjct: 1 MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60
Query: 61 AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV 120
AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV
Sbjct: 61 AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV 120
Query: 121 FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI 180
FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI
Sbjct: 121 FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI 180
Query: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI 240
KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI
Sbjct: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI 240
Query: 241 RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG 300
RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG
Sbjct: 241 RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG 300
Query: 301 SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF 360
SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF
Sbjct: 301 SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF 360
Query: 361 DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV 420
DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV
Sbjct: 361 DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV 420
Query: 421 NSMIIAIITSKQGRT 435
NSMIIAIITSKQGRT
Sbjct: 421 NSMIIAIITSKQGRT 435
>pir||B71162 hypothetical protein PH0495 - Pyrococcus horikoshii
>gi|3256900|dbj|BAA29583.1| (AP000002) 440aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 440
Score = 733 bits (1871), Expect = 0.0
Identities = 359/435 (82%), Positives = 403/435 (92%)
Query: 1 MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60
+ +I LRLV AI+AADPY+AV+N+V+V +K++V+ KEFEIKGKVYV+A GKAAC+MAR
Sbjct: 6 IREIGLRLVGEAIKAADPYRAVLNAVKVSDDKIIVQGKEFEIKGKVYVIALGKAACEMAR 65
Query: 61 AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV 120
AIE+ILDVEDGVAVTKYGYGKELK+I+VIEAGHPIPDE SI GA E L +L + +E DIV
Sbjct: 66 AIEDILDVEDGVAVTKYGYGKELKRIKVIEAGHPIPDEKSILGAKEALSILNRARENDIV 125
Query: 121 FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI 180
F+LISGGGSALFELPE+GISLEDLKLT +LLLKSGAKIHEINTVRKHISKVKGGKLAK I
Sbjct: 126 FILISGGGSALFELPEEGISLEDLKLTTDLLLKSGAKIHEINTVRKHISKVKGGKLAKMI 185
Query: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI 240
KGTGIVLIISDVVGDNLEAIASGPTVKDPTTF+DAKRILELY IW++VPESVR HIE+G+
Sbjct: 186 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPESVRLHIERGL 245
Query: 241 RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG 300
RGE EETLKE+LPN+HNFLIASNSISC+A+ EA +LGFKAY+MTTTLEGEAKDAGLFIG
Sbjct: 246 RGEVEETLKEDLPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLEGEAKDAGLFIG 305
Query: 301 SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF 360
SIVQEIA+ G PFEPPVVLVFGGETTVTIEG+GGKGGPNQE+ALSATRKI L A++VAF
Sbjct: 306 SIVQEIAERGRPFEPPVVLVFGGETTVTIEGKGGKGGPNQEIALSATRKISDLEALIVAF 365
Query: 361 DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV 420
DTDGTDGPTDAAGGIVDG TY+KLR KGID+EKVLKEHNSYEALKKVG LLFTGPTGTNV
Sbjct: 366 DTDGTDGPTDAAGGIVDGTTYKKLREKGIDVEKVLKEHNSYEALKKVGGLLFTGPTGTNV 425
Query: 421 NSMIIAIITSKQGRT 435
NS++IAI+TSK+GRT
Sbjct: 426 NSIVIAIVTSKRGRT 440
>pir||A72236 hypothetical protein TM1585 - Thermotoga maritima (strain MSB8)
>gi|4982155|gb|AAD36652.1|AE001803_5 (AE001803)
glycerate kinase, putative [Thermotoga maritima]
Length = 417
Score = 333 bits (846), Expect = 2e-90
Identities = 197/433 (45%), Positives = 277/433 (63%), Gaps = 28/433 (6%)
Query: 1 MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60
++ +A+ +VK +I A P +AV ++ KL + +V ++A GKAA MA+
Sbjct: 7 LKKLAIEIVKKSIEAVFPDRAVKETLP----KLNLD--------RVILVAVGKAAWRMAK 54
Query: 61 AIEEILD--VEDGVAVTKYGYGK-ELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEE 117
A E+L + GV VTKYG+ + + + EAGHP+PDEN+I+ L+L++++ E
Sbjct: 55 AAYEVLGKKIRKGVVVTKYGHSEGPIDDFEIYEAGHPVPDENTIKTTRRVLELVDQLNEN 114
Query: 118 DIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLA 177
D V L+SGGGS+LFELP +G+SLE+++ LLKSGA I EINTVRKH+S+VKGG+ A
Sbjct: 115 DTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVKGGRFA 174
Query: 178 KKIKGTGIV-LIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHI 236
+++ +V L++SDV+GD L+ IASGP D +T +DA ++LE YGI ESV+
Sbjct: 175 ERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSESVK--- 229
Query: 237 EKGIRGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAG 296
R +ET K L N+ LI + C A + GF A ++TT+L+ EA++AG
Sbjct: 230 ----RAILQETPK-HLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAG 284
Query: 297 LFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGL-NA 355
FI SI++E+ P + P L+FGGET V ++G G GG NQELALSA ++G+
Sbjct: 285 RFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKG-NGIGGRNQELALSAAIALEGIEGV 343
Query: 356 ILVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGP 415
IL + TDGTDGPTDAAGGIVDG T + L+ G D + LK ++SY ALKK G+LL TGP
Sbjct: 344 ILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNALKKSGALLITGP 403
Query: 416 TGTNVNSMIIAII 428
TGTNVN +II +I
Sbjct: 404 TGTNVNDLIIGLI 416
>pir||D72697 hypothetical protein APE0996 - Aeropyrum pernix (strain K1)
>gi|5104665|dbj|BAA79980.1| (AP000060) 400aa long
hypothetical protein [Aeropyrum pernix]
Length = 400
Score = 295 bits (747), Expect = 7e-79
Identities = 173/389 (44%), Positives = 234/389 (59%), Gaps = 9/389 (2%)
Query: 48 VLAFGKAACDMARAIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEG 107
VLA GK + MAR E L+ E GV V G ++ + V+E HP+PDE S+R
Sbjct: 2 VLALGKGSLQMARGALECLEPEGGVVVKPRGMTGNVEGLEVVEGSHPLPDEWSLRAGRRL 61
Query: 108 LKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKH 167
L+ E D V VL+SGGGSAL E+P +G++LEDL+ N LLLKSGA IHEINTVRKH
Sbjct: 62 LEWAGSAGEGDNVVVLVSGGGSALAEVPMEGLALEDLREVNMLLLKSGASIHEINTVRKH 121
Query: 168 ISKVKGGKLAKKIKGTGIV-LIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWD 226
+S++KGG+LA ++ + SDV GD L+ IASGPTV DPTT+ DA +LE YG+ D
Sbjct: 122 LSRIKGGRLAATAYPARVLGVYASDVPGDRLDMIASGPTVPDPTTYGDALAVLERYGLRD 181
Query: 227 RVPESVRSHIEKGIRGEAEETLK---EELPNIHNFLIASNSISCQAVVEEATKLGFKAYV 283
P V + +E G RGE EET K L N L ASN + + GF V
Sbjct: 182 SAPPRVVALLEAGARGEVEETPKPGDRRLSTTENRLAASNMDVLEDLAAWLGGRGFNTLV 241
Query: 284 MTTTLEGEAKDAGLFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELA 343
+T+ LEGE+++ G + SI E G P +PP L+ GGETTVT+ G GG+GG N ELA
Sbjct: 242 LTSRLEGESREVGRALASIALEALDRGVPVKPPAALLAGGETTVTVRG-GGRGGRNMELA 300
Query: 344 LSATRKIKGLN----AILVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHN 399
L+ + + + A ++A DTDG DG +DAAG + LR G+D ++L +++
Sbjct: 301 LAWSLAMAYWSPEAPAAILAMDTDGIDGRSDAAGAVAWPWLPVALRDAGLDPYQLLADND 360
Query: 400 SYEALKKVGSLLFTGPTGTNVNSMIIAII 428
S A GSL+ TG TGTN+NS+++ ++
Sbjct: 361 SERAFAYAGSLVSTGLTGTNLNSVVVVLL 389
>sp|Q44472|TUD4_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|805293|gb|AAA68699.1|
(U25634) putative hydroxypyruvate reductase; inducible
by tartrate; Method: conceptual translation supplied by
author [Agrobacterium vitis] >gi|1585264|prf||2124372D
ttuD gene [Agrobacterium vitis]
Length = 438
Score = 263 bits (666), Expect = 2e-69
Identities = 167/427 (39%), Positives = 239/427 (55%), Gaps = 24/427 (5%)
Query: 7 RLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEIL 66
R+ AA+ +ADP AV+N++ +G+ V+ GKA+ MA A++
Sbjct: 30 RIFDAAVASADPKIAVVNNLPERP------------RGRCVVVGAGKASAAMAAAVDAAW 77
Query: 67 -DVE-DGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLI 124
DV+ G+ VT+YG+ +I ++EA HP+PDE SI+ A + ++ + +D+V LI
Sbjct: 78 PDVDLSGIVVTRYGHAVPAGRIEILEASHPVPDEMSIKAAEKIFAAVQGLGPDDLVVALI 137
Query: 125 SGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAK-KIKGT 183
SGGGS+L P ++L D + N+ LL SGA I E+NTVRKH+S +KGG LA+ +
Sbjct: 138 SGGGSSLLVSPTGKMTLTDKRAVNQALLASGATISEMNTVRKHLSAIKGGHLARAALPAK 197
Query: 184 GIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGE 243
+ LIISDV GD+ IASGPTV DPTT DA I+ YGI +PES R+ + +G
Sbjct: 198 LVTLIISDVPGDDPSEIASGPTVADPTTLADAAAIIARYGI--DLPESARAVLVQG---- 251
Query: 244 AEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIV 303
ET K L+A+ SI+ +A A G ++ LEGEA++ G + I
Sbjct: 252 -NETPKAGEVAGEIRLVAAPSIALEAAAAAALDAGLCPLILGDALEGEAREMGRVMAGIA 310
Query: 304 QEIAKTGNPFEPPVVLVFGGETTVTIEG-EGGKGGPNQELALSATRKIKGLNAI-LVAFD 361
G P P V++ GGE+TV++ G+GG N E LS +KG + I +A D
Sbjct: 311 LSARDKGLPVAAPAVILSGGESTVSLGAMTEGRGGRNTEFLLSLAVALKGASGIWAIAGD 370
Query: 362 TDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVN 421
TDG DG DAAG +V ++ ++R GID L H+SY A K +G L+ TGPT TNVN
Sbjct: 371 TDGIDGVEDAAGALVAPDSLIRMRDAGIDPRATLSAHDSYTAFKAIGDLVVTGPTLTNVN 430
Query: 422 SMIIAII 428
+ +I
Sbjct: 431 DIRAILI 437
>pir||E83459 conserved hypothetical protein PA1499 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947454|gb|AAG04888.1|AE004578_10 (AE004578)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 421
Score = 252 bits (638), Expect = 4e-66
Identities = 166/427 (38%), Positives = 230/427 (52%), Gaps = 26/427 (6%)
Query: 8 LVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILD 67
L A+ A PY+ + + L +D+ G+ V+ GKAA MA +E+
Sbjct: 12 LFNTAVAAGHPYQVLADH--------LPEDRS----GRAIVIGAGKAAGAMAEVVEKHWQ 59
Query: 68 VE-DGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISG 126
E G+ V Y YG + +I V+EA HP+PD+ R A L+L+ + E D V L+SG
Sbjct: 60 GEIQGLVVAPYRYGAQCSRIEVVEASHPVPDDAGERVARRVLELISGLNESDRVIFLLSG 119
Query: 127 GGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGI- 185
GGSAL LP +GI L D + N+ LLKSGA I E+N VRKH+S +KGG+LAK +
Sbjct: 120 GGSALLSLPAEGIGLADKQAVNKALLKSGAAIGEMNCVRKHLSAIKGGRLAKACWPASVY 179
Query: 186 VLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAE 245
ISDV GD IASGP+V DPTT DA IL+ Y I VP++V +
Sbjct: 180 TYAISDVPGDEATVIASGPSVGDPTTSADALAILKRYAI--DVPQNVLD----WLADPRS 233
Query: 246 ETLKEELPNI---HNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSI 302
ET+K + P + H LIA+ + A + GF ++ LEGEA++ I
Sbjct: 234 ETVKPDDPCLARSHFQLIATPQNALDAAAVKCRAAGFSTLIL-GDLEGEAREVAKVHAGI 292
Query: 303 VQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKG-LNAILVAFD 361
++I K G P P V++ GGETTVT+ G G+GG N E LS T ++KG N +A D
Sbjct: 293 ARQIRKHGQPLAAPCVILSGGETTVTVRG-NGRGGRNAEFLLSLTAELKGEPNIWALAGD 351
Query: 362 TDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVN 421
TDG DG D AG ++ ++ + + G+ I L ++N Y + +G LL TGPT TNVN
Sbjct: 352 TDGIDGSEDNAGALMTPCSHARGEKAGLKIRDELYDNNGYGYFQALGDLLVTGPTRTNVN 411
Query: 422 SMIIAII 428
+I
Sbjct: 412 DFRAILI 418
>sp|P70788|TUD3_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|984369|gb|AAB61624.1|
(U32375) enzyme degrading primary tartrate degradation
product [Agrobacterium vitis]
Length = 385
Score = 243 bits (614), Expect = 3e-63
Identities = 145/390 (37%), Positives = 215/390 (54%), Gaps = 12/390 (3%)
Query: 44 GKVYVLAFGKAACDMARAIEEILDVED--GVAVTKYGYGKELKKIRVIEAGHPIPDENSI 101
G+ V+ GKA+ MA A++ + D GV VT+YG+ +IR+IEA HP+PD+ S+
Sbjct: 2 GRCVVIGAGKASAAMAAALDTVWSDVDLSGVVVTRYGHAVPSGRIRIIEASHPVPDDMSV 61
Query: 102 RGAIEGLKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEI 161
A+ + + + +D+V LISGGGS+L P G++L D K N+ LL SGA I E+
Sbjct: 62 EAAVRIIGAVRDLGPDDLVIALISGGGSSLLVSPAAGMTLADKKAVNKALLASGATISEM 121
Query: 162 NTVRKHISKVKGGKLAKKIKGTGIV-LIISDVVGDNLEAIASGPTVKDPTTFQDAKRILE 220
N VRK +S +KGG+LA+ +V L+ISDV GD+ IASGPTV + TT DA+ I+
Sbjct: 122 NAVRKQLSGIKGGRLAQLAHPARVVTLVISDVPGDDPSEIASGPTVANDTTIDDAREIVS 181
Query: 221 LYGIWDRVPESVRSHIEKGIRGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFK 280
Y + +P + + + G + ++ +IAS S++ A A G
Sbjct: 182 RYRL--VLPPAAQDVLANGGARNCTGKVSSDVR-----MIASPSMALDAAAAVAAANGLT 234
Query: 281 AYVMTTTLEGEAKDAGLFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIEGE-GGKGGPN 339
++ L+GEA+D G I + G P P VL+ GGET+V++ + G+GG N
Sbjct: 235 PVILGDALQGEARDVGTVFAGIAMSASTKGLPVRGPAVLLSGGETSVSLPADTKGRGGRN 294
Query: 340 QELALSATRKIKGLNAI-LVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEH 398
E LS + G I ++ DTDG DG DAAG ++ ++ ++R GID L H
Sbjct: 295 SEFLLSLAIGLDGAKGIWALSGDTDGIDGIEDAAGAMIGPDSLARMRGSGIDPRSALSRH 354
Query: 399 NSYEALKKVGSLLFTGPTGTNVNSMIIAII 428
+SY A K + L+ TGPT TNVN + +I
Sbjct: 355 DSYTAFKAIDDLVITGPTLTNVNDIRAILI 384
>gb|AAB66496.1| (U87316) putative glycerate kinase [Methylobacterium extorquens]
Length = 437
Score = 238 bits (602), Expect = 7e-62
Identities = 156/403 (38%), Positives = 217/403 (53%), Gaps = 29/403 (7%)
Query: 44 GKVYVLAFGKAACDMARAIEEILDVEDGV--------AVTKYGYGKELKKIRVIEAGHPI 95
G++ +L GKA MA E E GV AV ++GYG+E IR++EAGHP+
Sbjct: 45 GRLIILGAGKAGGSMAAVASEFYRQEHGVPEDRIVGLAVARHGYGEEAPGIRMVEAGHPV 104
Query: 96 PDENSIRGAIEGLKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSG 155
PD I E L L ED V VL+SGGGSA + P ++L + + + LL+SG
Sbjct: 105 PDAAGIEATKEALALAASAGPEDEVLVLLSGGGSANWIAPAGNLTLAEKQAITKALLRSG 164
Query: 156 AKIHEINTVRKHISKVKGGKLAKKIKGTG--IVLIISDVVGDNLEAIASGPTVKDPTTFQ 213
A I+EIN VRKH+S++KGG+LA + + L ISDV D+ IASGPTV DP+T
Sbjct: 165 APINEINAVRKHLSRIKGGRLAMAARNAKSILTLAISDVPHDDPSVIASGPTVPDPSTLA 224
Query: 214 DAKRILELYGIWDRVPESVRSHIEKGIRGEAEETLKEELP---NIHNFLIASNSISCQAV 270
DA+ I E GI +PES + + A ET K P +IA + +A
Sbjct: 225 DARAICERRGI--SLPESALAL----LNDPANETPKAGDPAFARAEYRIIARPIDALEAA 278
Query: 271 VEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIE 330
E A + G++ ++ + LEGEA++ + E + G V L+ GGE TVTI
Sbjct: 279 AEAARRAGYEPVMLGSDLEGEAREVAAEHARLALEARQAGR----RVALISGGELTVTIR 334
Query: 331 GEGGKGGPNQELALSATRKIKGLNAIL-VAFDTDGTDG----PTDAAGGIVDGETYEKLR 385
GE G GGPNQE AL+ + G I +A DTDGTDG TD AGG+VD T + +
Sbjct: 335 GE-GDGGPNQEYALALAIALDGAEGIAGIAADTDGTDGGRGAATDPAGGLVDATTLSRAQ 393
Query: 386 RKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMIIAII 428
G+D + +L +++S +G L+ GPT TNVN + ++
Sbjct: 394 AAGLDPKAMLLDNDSTRFFATIGDLVQPGPTRTNVNDCRVILV 436
>gb|AAK40970.1| Glycerate kinase, putative [Sulfolobus solfataricus]
Length = 400
Score = 222 bits (559), Expect = 8e-57
Identities = 151/421 (35%), Positives = 231/421 (54%), Gaps = 30/421 (7%)
Query: 8 LVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILD 67
+V + DPYKA+ VRV N LL +++ K K +++ GKA+ MAR E ++
Sbjct: 3 IVDKILEYTDPYKALQEKVRVYNNILLFNNEKIPFK-KPILISIGKASLPMARFFRERME 61
Query: 68 VEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISGG 127
++ + VT G K+ VIEAGHP+PDENSI+ ++LL ++ D+V ISGG
Sbjct: 62 LKAKLIVTPKGTNG--KENDVIEAGHPLPDENSIKAGKRMIELLAN-EDYDLVIFAISGG 118
Query: 128 GSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGIVL 187
SAL E E I L++LK+ N++L+ SG I++IN VRKH+SKVKGGK+ + +K ++
Sbjct: 119 ASALVEYSE--IPLDELKIINKVLVTSGLGINKINIVRKHLSKVKGGKILEYVKDKIPIV 176
Query: 188 --IISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAE 245
I+SDV G+++ +I SG T D ++ DA IL+ G+ E ++
Sbjct: 177 SFIVSDVPGNDISSIGSGLTSIDNSSNDDALEILKAIGL-----EKYSKYLT-------- 223
Query: 246 ETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQE 305
ET K + N++I N V+ + ++++T+ + GEA+D G I SI
Sbjct: 224 ETPKSFSRIVKNYIILDN----MEVLRKLANTLVNSFILTSEIRGEARDVGAIIASIYNS 279
Query: 306 IAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAI-LVAFDTDG 364
PF P L+ GGE VTI+G+ GKGG N E+ LS + K N L+ F TDG
Sbjct: 280 SESYNIPFRRPYYLLVGGEPEVTIQGKAGKGGRNGEVCLSFLKYAKKRNRFELLGFATDG 339
Query: 365 TDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMI 424
DG ++ AG V + + + +I L+ HNSY L+ +++ TG T TNVN++
Sbjct: 340 IDGNSEYAGCKVSSD----MEIREDEINNALETHNSYGLLESHKAVIKTGYTHTNVNNIY 395
Query: 425 I 425
+
Sbjct: 396 V 396
>emb|CAB57636.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 400
Score = 222 bits (559), Expect = 8e-57
Identities = 151/421 (35%), Positives = 231/421 (54%), Gaps = 30/421 (7%)
Query: 8 LVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILD 67
+V + DPYKA+ VRV N LL +++ K K +++ GKA+ MAR E ++
Sbjct: 3 IVDKILEYTDPYKALQEKVRVYNNILLFNNEKIPFK-KPILISIGKASLPMARFFRERME 61
Query: 68 VEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISGG 127
++ + VT G K+ VIEAGHP+PDENSI+ ++LL ++ D+V ISGG
Sbjct: 62 LKAKLIVTPKGTNG--KENDVIEAGHPLPDENSIKAGKRMIELLAN-EDYDLVIFAISGG 118
Query: 128 GSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGIVL 187
SAL E E I L++LK+ N++L+ SG I++IN VRKH+SKVKGGK+ + +K ++
Sbjct: 119 ASALVEYSE--IPLDELKIINKVLVTSGLGINKINIVRKHLSKVKGGKILEYVKDKIPIV 176
Query: 188 --IISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAE 245
I+SDV G+++ +I SG T D ++ DA IL+ G+ E ++
Sbjct: 177 SFIVSDVPGNDISSIGSGLTSIDNSSNDDALEILKAIGL-----EKYSKYLT-------- 223
Query: 246 ETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQE 305
ET K + N++I N V+ + ++++T+ + GEA+D G I SI
Sbjct: 224 ETPKSFSRIVKNYIILDN----MEVLRKLANTLVNSFILTSEIRGEARDVGAIIASIYNS 279
Query: 306 IAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAI-LVAFDTDG 364
PF P L+ GGE VTI+G+ GKGG N E+ LS + K N L+ F TDG
Sbjct: 280 SESYNIPFRRPYYLLVGGEPEVTIQGKAGKGGRNGEVCLSFLKYAKKRNRFELLGFATDG 339
Query: 365 TDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMI 424
DG ++ AG V + + + +I L+ HNSY L+ +++ TG T TNVN++
Sbjct: 340 IDGNSEYAGCKVSSD----MEIREDEINNALETHNSYGLLESHKAVIKTGYTHTNVNNIY 395
Query: 425 I 425
+
Sbjct: 396 V 396
>emb|CAC11595.1| (AL445064) glycerate kinase related protein [Thermoplasma
acidophilum]
Length = 396
Score = 180 bits (452), Expect = 3e-44
Identities = 129/410 (31%), Positives = 216/410 (52%), Gaps = 33/410 (8%)
Query: 27 RVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILDVE---DGVAVTKYGYGKEL 83
RV GN + D + +++V+ FGKA+ +M+ I + + + G+ V
Sbjct: 12 RVMGNA--IGDLDVSRYSRIFVMGFGKASYEMSEGIRDHVRKKLAYAGIIVPVDQDVSGF 69
Query: 84 KKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKE--EDIVFVLISGGGSALFELPEDGISL 141
++ ++ HP S+ + LL KVK D V VLISGGGS+LFE+PE+GI++
Sbjct: 70 PELEILRGTHPYTSSLSVSSS---RTLLSKVKPGPNDAVIVLISGGGSSLFEIPEEGITI 126
Query: 142 EDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGI-VLIISDVVGDNLEAI 200
+ + ++ ++++ A I+E+NT+R +S VKGGKLAK + + IISDV GD++ I
Sbjct: 127 DQISEISKKMMQASADIYELNTIRSCLSSVKGGKLAKLLYPASVFAYIISDVPGDDVSII 186
Query: 201 ASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAEETLKEELPNIHNFLI 260
ASGP ++ L+ +++R + IE+ ++ E E + ++
Sbjct: 187 ASGPL---------SENKLDPVAVYERFRNVIGVDIERFLKTAQIE--DEYFRKVQTRIV 235
Query: 261 ASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQEIAK-TGNPFEPPVVL 319
SN + + + +G + + + G+ +D I IV+ +++ G F +
Sbjct: 236 LSNRDFVRRI---ESYVGEPIVSIGSGISGDVEDVSDGIIDIVRSVSRIKGRSF----WI 288
Query: 320 VFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAFDTDGTDGPTDAAGGIVDGE 379
V GGETTV + G G GG N EL+L +K + + ++ TDG DG + AAGGIVD
Sbjct: 289 VMGGETTVNVRG-NGIGGRNLELSLLFMKKCNFSDFLFISMGTDGIDGVSPAAGGIVDAS 347
Query: 380 TYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMIIAIIT 429
T K R +I++ LK ++SY L K GS + TG TG NV+ +++A ++
Sbjct: 348 T--KARISSEEIDQALKNNDSYTLLSKYGSAIMTGRTGNNVSDIVVAYVS 395
>gb|AAF51252.1| (AE003583) CG9886 gene product [Drosophila melanogaster]
Length = 487
Score = 176 bits (441), Expect = 5e-43
Identities = 133/438 (30%), Positives = 213/438 (48%), Gaps = 57/438 (13%)
Query: 41 EIKGKV-YVLAFGKAACDMARAIEEILDVEDGVAV------TKYGYGKELKKIRVIEAG- 92
+I GK +++ FGKA MA +++ L V T + + + V+ G
Sbjct: 56 DISGKTCHIVGFGKAVLGMANKVQQDLGATSAGGVLSVPVNTLKQFQQPVAPGLVVHEGA 115
Query: 93 -HPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELL 151
+ +PDEN+++ A E +L EK+ +DI+FV ISGGGSAL LP ++LED + + L
Sbjct: 116 ANNLPDENALKAAREIKQLAEKMTAQDILFVFISGGGSALLPLPRSPLTLEDKRSIADKL 175
Query: 152 LKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGIVL--IISDVVGDNLEAIASGPTVKDP 209
+K GA I EIN VR S +KGG+LA+ G+++ ++SD++GD LE IA GPT++ P
Sbjct: 176 MKRGASIQEINAVRIACSDIKGGRLARLAGQAGLLVTFVLSDIIGDPLELIACGPTIQ-P 234
Query: 210 TTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAEETLKEELPNIHNFLIASNSISCQA 269
IL+ + +W+ + +R E + EE LP F++ SN I+
Sbjct: 235 EAAASPSDILKKHHVWEELSPEIRRVFE-----QPEEQKNTSLPEHKVFVVGSNVIATST 289
Query: 270 VVEEATKLGFKAYVMTTTLEG-----------------EAKDAGLFIGSIVQEIAKTGNP 312
EA +LG+ V++ ++G EAK G+ + ++ A
Sbjct: 290 AAHEAERLGYIPCVLSCAVQGDVAQVAGDYQRLLHGIQEAKQHGILDPQLREKYAFGERS 349
Query: 313 F-------------EPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAI--- 356
+ + P+ L+ GGE + + G G GG +Q LAL ++ + A+
Sbjct: 350 YPTFRRALEDHMSSKKPLFLICGGEPVIKVSGHG-LGGRSQHLALLMSQALHRDEAMRDC 408
Query: 357 -LVAFDTDGTDGPTDAAGGIVDGETYEK-LRRKGID-IEKVLKEHNSYEALKKVGS---L 410
++ TDG DGPTDAAG D E L +D + + L+ +SY K +
Sbjct: 409 TFLSAGTDGIDGPTDAAGAFGDSSVVESYLGDHTLDELAETLRNCDSYNFYKNLAQGEHH 468
Query: 411 LFTGPTGTNVNSMIIAII 428
+ TG TGTNV + ++
Sbjct: 469 VLTGHTGTNVMDLHFLVV 486
>sp|Q09235|YQ42_CAEEL HYPOTHETICAL 40.0 KD PROTEIN C13B9.2 IN CHROMOSOME III
>gi|687809|gb|AAA62515.1| (U21309) C13B9.2 gene product
[Caenorhabditis elegans]
Length = 363
Score = 127 bits (316), Expect = 2e-28
Identities = 93/268 (34%), Positives = 137/268 (50%), Gaps = 27/268 (10%)
Query: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDA---KRILELYGIWD-RVPESVRSHI 236
KG I LIISDV+G+ +E IASGPTV P QD ILE I +P +V++ +
Sbjct: 100 KGCSIALIISDVIGNPVELIASGPTVI-PAHQQDKFIISNILESLKINKLELPVNVKNVL 158
Query: 237 EKGIRGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAG 296
E +E L E NF+I+SN+ + +A E T G+ + ++T++L G A + G
Sbjct: 159 EN----HEKEQLPENTSRFQNFIISSNNFALRAAAEYLTSSGYNSTIVTSSLSGNAAEIG 214
Query: 297 LFIGSIVQEIAKTGNPF---------EPPVVLVFGGETTVTIEGEGGKGGPNQELALSAT 347
I+ E + T + P+ L+FGGETTV + GKGG NQE+ LS
Sbjct: 215 KKFAEIITEKSITSSHLLKNSNLTIENYPIALLFGGETTVHLSENPGKGGRNQEMVLSCL 274
Query: 348 RKIK----GLNAILVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSY-- 401
+K N ++ TDG DGPTDAAG I+ E + ++ + L+ +SY
Sbjct: 275 DALKTRVPAHNFTFLSAGTDGQDGPTDAAGAIISNE--DLPLNSLLNSSEFLQNSDSYNF 332
Query: 402 -EALKKVGSLLFTGPTGTNVNSMIIAII 428
K + + TGP+GTNV + I ++
Sbjct: 333 WRQFKGGANHILTGPSGTNVMDIQILLL 360
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.137 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161295734
Number of Sequences: 2977
Number of extensions: 7120986
Number of successful extensions: 15207
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15136
Number of HSP's gapped (non-prelim): 14
length of query: 435
length of database: 189,106,746
effective HSP length: 61
effective length of query: 374
effective length of database: 152,599,039
effective search space: 57072040586
effective search space used: 57072040586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 166 (69.1 bits)