BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1021 (PAB1021) DE:Hypothetical protein
         (435 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75001 hypothetical protein PAB1021 - Pyrococcus abyssi (st...   850  0.0
pir||B71162 hypothetical protein PH0495 - Pyrococcus horikoshii ...   733  0.0
pir||A72236 hypothetical protein TM1585 - Thermotoga maritima (s...   333  2e-90
pir||D72697 hypothetical protein APE0996 - Aeropyrum pernix (str...   295  7e-79
sp|Q44472|TUD4_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|8052...   263  2e-69
pir||E83459 conserved hypothetical protein PA1499 [imported] - P...   252  4e-66
sp|P70788|TUD3_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|9843...   243  3e-63
gb|AAB66496.1| (U87316) putative glycerate kinase [Methylobacter...   238  7e-62
gb|AAK40970.1| Glycerate kinase, putative [Sulfolobus solfataricus]   222  8e-57
emb|CAB57636.1| (Y18930) hypothetical protein [Sulfolobus solfat...   222  8e-57
emb|CAC11595.1| (AL445064) glycerate kinase related protein [The...   180  3e-44
gb|AAF51252.1| (AE003583) CG9886 gene product [Drosophila melano...   176  5e-43
sp|Q09235|YQ42_CAEEL HYPOTHETICAL 40.0 KD PROTEIN C13B9.2 IN CHR...   127  2e-28

>pir||E75001 hypothetical protein PAB1021 - Pyrococcus abyssi (strain Orsay)
           >gi|5458965|emb|CAB50451.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 435
           
 Score =  850 bits (2173), Expect = 0.0
 Identities = 435/435 (100%), Positives = 435/435 (100%)

Query: 1   MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60
           MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR
Sbjct: 1   MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60

Query: 61  AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV 120
           AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV
Sbjct: 61  AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV 120

Query: 121 FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI 180
           FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI
Sbjct: 121 FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI 180

Query: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI 240
           KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI
Sbjct: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI 240

Query: 241 RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG 300
           RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG
Sbjct: 241 RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG 300

Query: 301 SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF 360
           SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF
Sbjct: 301 SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF 360

Query: 361 DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV 420
           DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV
Sbjct: 361 DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV 420

Query: 421 NSMIIAIITSKQGRT 435
           NSMIIAIITSKQGRT
Sbjct: 421 NSMIIAIITSKQGRT 435


>pir||B71162 hypothetical protein PH0495 - Pyrococcus horikoshii
           >gi|3256900|dbj|BAA29583.1| (AP000002) 440aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 440
           
 Score =  733 bits (1871), Expect = 0.0
 Identities = 359/435 (82%), Positives = 403/435 (92%)

Query: 1   MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60
           + +I LRLV  AI+AADPY+AV+N+V+V  +K++V+ KEFEIKGKVYV+A GKAAC+MAR
Sbjct: 6   IREIGLRLVGEAIKAADPYRAVLNAVKVSDDKIIVQGKEFEIKGKVYVIALGKAACEMAR 65

Query: 61  AIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIV 120
           AIE+ILDVEDGVAVTKYGYGKELK+I+VIEAGHPIPDE SI GA E L +L + +E DIV
Sbjct: 66  AIEDILDVEDGVAVTKYGYGKELKRIKVIEAGHPIPDEKSILGAKEALSILNRARENDIV 125

Query: 121 FVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKI 180
           F+LISGGGSALFELPE+GISLEDLKLT +LLLKSGAKIHEINTVRKHISKVKGGKLAK I
Sbjct: 126 FILISGGGSALFELPEEGISLEDLKLTTDLLLKSGAKIHEINTVRKHISKVKGGKLAKMI 185

Query: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGI 240
           KGTGIVLIISDVVGDNLEAIASGPTVKDPTTF+DAKRILELY IW++VPESVR HIE+G+
Sbjct: 186 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPESVRLHIERGL 245

Query: 241 RGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIG 300
           RGE EETLKE+LPN+HNFLIASNSISC+A+  EA +LGFKAY+MTTTLEGEAKDAGLFIG
Sbjct: 246 RGEVEETLKEDLPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLEGEAKDAGLFIG 305

Query: 301 SIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAF 360
           SIVQEIA+ G PFEPPVVLVFGGETTVTIEG+GGKGGPNQE+ALSATRKI  L A++VAF
Sbjct: 306 SIVQEIAERGRPFEPPVVLVFGGETTVTIEGKGGKGGPNQEIALSATRKISDLEALIVAF 365

Query: 361 DTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNV 420
           DTDGTDGPTDAAGGIVDG TY+KLR KGID+EKVLKEHNSYEALKKVG LLFTGPTGTNV
Sbjct: 366 DTDGTDGPTDAAGGIVDGTTYKKLREKGIDVEKVLKEHNSYEALKKVGGLLFTGPTGTNV 425

Query: 421 NSMIIAIITSKQGRT 435
           NS++IAI+TSK+GRT
Sbjct: 426 NSIVIAIVTSKRGRT 440


>pir||A72236 hypothetical protein TM1585 - Thermotoga maritima (strain MSB8)
           >gi|4982155|gb|AAD36652.1|AE001803_5 (AE001803)
           glycerate kinase, putative [Thermotoga maritima]
           Length = 417
           
 Score =  333 bits (846), Expect = 2e-90
 Identities = 197/433 (45%), Positives = 277/433 (63%), Gaps = 28/433 (6%)

Query: 1   MEDIALRLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMAR 60
           ++ +A+ +VK +I A  P +AV  ++     KL +         +V ++A GKAA  MA+
Sbjct: 7   LKKLAIEIVKKSIEAVFPDRAVKETLP----KLNLD--------RVILVAVGKAAWRMAK 54

Query: 61  AIEEILD--VEDGVAVTKYGYGK-ELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEE 117
           A  E+L   +  GV VTKYG+ +  +    + EAGHP+PDEN+I+     L+L++++ E 
Sbjct: 55  AAYEVLGKKIRKGVVVTKYGHSEGPIDDFEIYEAGHPVPDENTIKTTRRVLELVDQLNEN 114

Query: 118 DIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLA 177
           D V  L+SGGGS+LFELP +G+SLE+++     LLKSGA I EINTVRKH+S+VKGG+ A
Sbjct: 115 DTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVKGGRFA 174

Query: 178 KKIKGTGIV-LIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHI 236
           +++    +V L++SDV+GD L+ IASGP   D +T +DA ++LE YGI     ESV+   
Sbjct: 175 ERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSESVK--- 229

Query: 237 EKGIRGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAG 296
               R   +ET K  L N+   LI +    C      A + GF A ++TT+L+ EA++AG
Sbjct: 230 ----RAILQETPK-HLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAG 284

Query: 297 LFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGL-NA 355
            FI SI++E+     P + P  L+FGGET V ++G  G GG NQELALSA   ++G+   
Sbjct: 285 RFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKG-NGIGGRNQELALSAAIALEGIEGV 343

Query: 356 ILVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGP 415
           IL +  TDGTDGPTDAAGGIVDG T + L+  G D  + LK ++SY ALKK G+LL TGP
Sbjct: 344 ILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNALKKSGALLITGP 403

Query: 416 TGTNVNSMIIAII 428
           TGTNVN +II +I
Sbjct: 404 TGTNVNDLIIGLI 416


>pir||D72697 hypothetical protein APE0996 - Aeropyrum pernix (strain K1)
           >gi|5104665|dbj|BAA79980.1| (AP000060) 400aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 400
           
 Score =  295 bits (747), Expect = 7e-79
 Identities = 173/389 (44%), Positives = 234/389 (59%), Gaps = 9/389 (2%)

Query: 48  VLAFGKAACDMARAIEEILDVEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEG 107
           VLA GK +  MAR   E L+ E GV V   G    ++ + V+E  HP+PDE S+R     
Sbjct: 2   VLALGKGSLQMARGALECLEPEGGVVVKPRGMTGNVEGLEVVEGSHPLPDEWSLRAGRRL 61

Query: 108 LKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKH 167
           L+      E D V VL+SGGGSAL E+P +G++LEDL+  N LLLKSGA IHEINTVRKH
Sbjct: 62  LEWAGSAGEGDNVVVLVSGGGSALAEVPMEGLALEDLREVNMLLLKSGASIHEINTVRKH 121

Query: 168 ISKVKGGKLAKKIKGTGIV-LIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWD 226
           +S++KGG+LA       ++ +  SDV GD L+ IASGPTV DPTT+ DA  +LE YG+ D
Sbjct: 122 LSRIKGGRLAATAYPARVLGVYASDVPGDRLDMIASGPTVPDPTTYGDALAVLERYGLRD 181

Query: 227 RVPESVRSHIEKGIRGEAEETLK---EELPNIHNFLIASNSISCQAVVEEATKLGFKAYV 283
             P  V + +E G RGE EET K     L    N L ASN    + +       GF   V
Sbjct: 182 SAPPRVVALLEAGARGEVEETPKPGDRRLSTTENRLAASNMDVLEDLAAWLGGRGFNTLV 241

Query: 284 MTTTLEGEAKDAGLFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELA 343
           +T+ LEGE+++ G  + SI  E    G P +PP  L+ GGETTVT+ G GG+GG N ELA
Sbjct: 242 LTSRLEGESREVGRALASIALEALDRGVPVKPPAALLAGGETTVTVRG-GGRGGRNMELA 300

Query: 344 LSATRKIKGLN----AILVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHN 399
           L+ +  +   +    A ++A DTDG DG +DAAG +        LR  G+D  ++L +++
Sbjct: 301 LAWSLAMAYWSPEAPAAILAMDTDGIDGRSDAAGAVAWPWLPVALRDAGLDPYQLLADND 360

Query: 400 SYEALKKVGSLLFTGPTGTNVNSMIIAII 428
           S  A    GSL+ TG TGTN+NS+++ ++
Sbjct: 361 SERAFAYAGSLVSTGLTGTNLNSVVVVLL 389


>sp|Q44472|TUD4_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|805293|gb|AAA68699.1|
           (U25634) putative hydroxypyruvate reductase; inducible
           by tartrate; Method: conceptual translation supplied by
           author [Agrobacterium vitis] >gi|1585264|prf||2124372D
           ttuD gene [Agrobacterium vitis]
           Length = 438
           
 Score =  263 bits (666), Expect = 2e-69
 Identities = 167/427 (39%), Positives = 239/427 (55%), Gaps = 24/427 (5%)

Query: 7   RLVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEIL 66
           R+  AA+ +ADP  AV+N++                +G+  V+  GKA+  MA A++   
Sbjct: 30  RIFDAAVASADPKIAVVNNLPERP------------RGRCVVVGAGKASAAMAAAVDAAW 77

Query: 67  -DVE-DGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLI 124
            DV+  G+ VT+YG+     +I ++EA HP+PDE SI+ A +    ++ +  +D+V  LI
Sbjct: 78  PDVDLSGIVVTRYGHAVPAGRIEILEASHPVPDEMSIKAAEKIFAAVQGLGPDDLVVALI 137

Query: 125 SGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAK-KIKGT 183
           SGGGS+L   P   ++L D +  N+ LL SGA I E+NTVRKH+S +KGG LA+  +   
Sbjct: 138 SGGGSSLLVSPTGKMTLTDKRAVNQALLASGATISEMNTVRKHLSAIKGGHLARAALPAK 197

Query: 184 GIVLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGE 243
            + LIISDV GD+   IASGPTV DPTT  DA  I+  YGI   +PES R+ + +G    
Sbjct: 198 LVTLIISDVPGDDPSEIASGPTVADPTTLADAAAIIARYGI--DLPESARAVLVQG---- 251

Query: 244 AEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIV 303
             ET K         L+A+ SI+ +A    A   G    ++   LEGEA++ G  +  I 
Sbjct: 252 -NETPKAGEVAGEIRLVAAPSIALEAAAAAALDAGLCPLILGDALEGEAREMGRVMAGIA 310

Query: 304 QEIAKTGNPFEPPVVLVFGGETTVTIEG-EGGKGGPNQELALSATRKIKGLNAI-LVAFD 361
                 G P   P V++ GGE+TV++     G+GG N E  LS    +KG + I  +A D
Sbjct: 311 LSARDKGLPVAAPAVILSGGESTVSLGAMTEGRGGRNTEFLLSLAVALKGASGIWAIAGD 370

Query: 362 TDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVN 421
           TDG DG  DAAG +V  ++  ++R  GID    L  H+SY A K +G L+ TGPT TNVN
Sbjct: 371 TDGIDGVEDAAGALVAPDSLIRMRDAGIDPRATLSAHDSYTAFKAIGDLVVTGPTLTNVN 430

Query: 422 SMIIAII 428
            +   +I
Sbjct: 431 DIRAILI 437


>pir||E83459 conserved hypothetical protein PA1499 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9947454|gb|AAG04888.1|AE004578_10 (AE004578)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 421
           
 Score =  252 bits (638), Expect = 4e-66
 Identities = 166/427 (38%), Positives = 230/427 (52%), Gaps = 26/427 (6%)

Query: 8   LVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILD 67
           L   A+ A  PY+ + +         L +D+     G+  V+  GKAA  MA  +E+   
Sbjct: 12  LFNTAVAAGHPYQVLADH--------LPEDRS----GRAIVIGAGKAAGAMAEVVEKHWQ 59

Query: 68  VE-DGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISG 126
            E  G+ V  Y YG +  +I V+EA HP+PD+   R A   L+L+  + E D V  L+SG
Sbjct: 60  GEIQGLVVAPYRYGAQCSRIEVVEASHPVPDDAGERVARRVLELISGLNESDRVIFLLSG 119

Query: 127 GGSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGI- 185
           GGSAL  LP +GI L D +  N+ LLKSGA I E+N VRKH+S +KGG+LAK      + 
Sbjct: 120 GGSALLSLPAEGIGLADKQAVNKALLKSGAAIGEMNCVRKHLSAIKGGRLAKACWPASVY 179

Query: 186 VLIISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAE 245
              ISDV GD    IASGP+V DPTT  DA  IL+ Y I   VP++V       +     
Sbjct: 180 TYAISDVPGDEATVIASGPSVGDPTTSADALAILKRYAI--DVPQNVLD----WLADPRS 233

Query: 246 ETLKEELPNI---HNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSI 302
           ET+K + P +   H  LIA+   +  A   +    GF   ++   LEGEA++       I
Sbjct: 234 ETVKPDDPCLARSHFQLIATPQNALDAAAVKCRAAGFSTLIL-GDLEGEAREVAKVHAGI 292

Query: 303 VQEIAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKG-LNAILVAFD 361
            ++I K G P   P V++ GGETTVT+ G  G+GG N E  LS T ++KG  N   +A D
Sbjct: 293 ARQIRKHGQPLAAPCVILSGGETTVTVRG-NGRGGRNAEFLLSLTAELKGEPNIWALAGD 351

Query: 362 TDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVN 421
           TDG DG  D AG ++   ++ +  + G+ I   L ++N Y   + +G LL TGPT TNVN
Sbjct: 352 TDGIDGSEDNAGALMTPCSHARGEKAGLKIRDELYDNNGYGYFQALGDLLVTGPTRTNVN 411

Query: 422 SMIIAII 428
                +I
Sbjct: 412 DFRAILI 418


>sp|P70788|TUD3_AGRVI PUTATIVE HYDROXYPYRUVATE REDUCTASE >gi|984369|gb|AAB61624.1|
           (U32375) enzyme degrading primary tartrate degradation
           product [Agrobacterium vitis]
           Length = 385
           
 Score =  243 bits (614), Expect = 3e-63
 Identities = 145/390 (37%), Positives = 215/390 (54%), Gaps = 12/390 (3%)

Query: 44  GKVYVLAFGKAACDMARAIEEILDVED--GVAVTKYGYGKELKKIRVIEAGHPIPDENSI 101
           G+  V+  GKA+  MA A++ +    D  GV VT+YG+     +IR+IEA HP+PD+ S+
Sbjct: 2   GRCVVIGAGKASAAMAAALDTVWSDVDLSGVVVTRYGHAVPSGRIRIIEASHPVPDDMSV 61

Query: 102 RGAIEGLKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSGAKIHEI 161
             A+  +  +  +  +D+V  LISGGGS+L   P  G++L D K  N+ LL SGA I E+
Sbjct: 62  EAAVRIIGAVRDLGPDDLVIALISGGGSSLLVSPAAGMTLADKKAVNKALLASGATISEM 121

Query: 162 NTVRKHISKVKGGKLAKKIKGTGIV-LIISDVVGDNLEAIASGPTVKDPTTFQDAKRILE 220
           N VRK +S +KGG+LA+      +V L+ISDV GD+   IASGPTV + TT  DA+ I+ 
Sbjct: 122 NAVRKQLSGIKGGRLAQLAHPARVVTLVISDVPGDDPSEIASGPTVANDTTIDDAREIVS 181

Query: 221 LYGIWDRVPESVRSHIEKGIRGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFK 280
            Y +   +P + +  +  G        +  ++      +IAS S++  A    A   G  
Sbjct: 182 RYRL--VLPPAAQDVLANGGARNCTGKVSSDVR-----MIASPSMALDAAAAVAAANGLT 234

Query: 281 AYVMTTTLEGEAKDAGLFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIEGE-GGKGGPN 339
             ++   L+GEA+D G     I    +  G P   P VL+ GGET+V++  +  G+GG N
Sbjct: 235 PVILGDALQGEARDVGTVFAGIAMSASTKGLPVRGPAVLLSGGETSVSLPADTKGRGGRN 294

Query: 340 QELALSATRKIKGLNAI-LVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEH 398
            E  LS    + G   I  ++ DTDG DG  DAAG ++  ++  ++R  GID    L  H
Sbjct: 295 SEFLLSLAIGLDGAKGIWALSGDTDGIDGIEDAAGAMIGPDSLARMRGSGIDPRSALSRH 354

Query: 399 NSYEALKKVGSLLFTGPTGTNVNSMIIAII 428
           +SY A K +  L+ TGPT TNVN +   +I
Sbjct: 355 DSYTAFKAIDDLVITGPTLTNVNDIRAILI 384


>gb|AAB66496.1| (U87316) putative glycerate kinase [Methylobacterium extorquens]
           Length = 437
           
 Score =  238 bits (602), Expect = 7e-62
 Identities = 156/403 (38%), Positives = 217/403 (53%), Gaps = 29/403 (7%)

Query: 44  GKVYVLAFGKAACDMARAIEEILDVEDGV--------AVTKYGYGKELKKIRVIEAGHPI 95
           G++ +L  GKA   MA    E    E GV        AV ++GYG+E   IR++EAGHP+
Sbjct: 45  GRLIILGAGKAGGSMAAVASEFYRQEHGVPEDRIVGLAVARHGYGEEAPGIRMVEAGHPV 104

Query: 96  PDENSIRGAIEGLKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELLLKSG 155
           PD   I    E L L      ED V VL+SGGGSA +  P   ++L + +   + LL+SG
Sbjct: 105 PDAAGIEATKEALALAASAGPEDEVLVLLSGGGSANWIAPAGNLTLAEKQAITKALLRSG 164

Query: 156 AKIHEINTVRKHISKVKGGKLAKKIKGTG--IVLIISDVVGDNLEAIASGPTVKDPTTFQ 213
           A I+EIN VRKH+S++KGG+LA   +     + L ISDV  D+   IASGPTV DP+T  
Sbjct: 165 APINEINAVRKHLSRIKGGRLAMAARNAKSILTLAISDVPHDDPSVIASGPTVPDPSTLA 224

Query: 214 DAKRILELYGIWDRVPESVRSHIEKGIRGEAEETLKEELP---NIHNFLIASNSISCQAV 270
           DA+ I E  GI   +PES  +     +   A ET K   P        +IA    + +A 
Sbjct: 225 DARAICERRGI--SLPESALAL----LNDPANETPKAGDPAFARAEYRIIARPIDALEAA 278

Query: 271 VEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQEIAKTGNPFEPPVVLVFGGETTVTIE 330
            E A + G++  ++ + LEGEA++       +  E  + G      V L+ GGE TVTI 
Sbjct: 279 AEAARRAGYEPVMLGSDLEGEAREVAAEHARLALEARQAGR----RVALISGGELTVTIR 334

Query: 331 GEGGKGGPNQELALSATRKIKGLNAIL-VAFDTDGTDG----PTDAAGGIVDGETYEKLR 385
           GE G GGPNQE AL+    + G   I  +A DTDGTDG     TD AGG+VD  T  + +
Sbjct: 335 GE-GDGGPNQEYALALAIALDGAEGIAGIAADTDGTDGGRGAATDPAGGLVDATTLSRAQ 393

Query: 386 RKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMIIAII 428
             G+D + +L +++S      +G L+  GPT TNVN   + ++
Sbjct: 394 AAGLDPKAMLLDNDSTRFFATIGDLVQPGPTRTNVNDCRVILV 436


>gb|AAK40970.1| Glycerate kinase, putative [Sulfolobus solfataricus]
           Length = 400
           
 Score =  222 bits (559), Expect = 8e-57
 Identities = 151/421 (35%), Positives = 231/421 (54%), Gaps = 30/421 (7%)

Query: 8   LVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILD 67
           +V   +   DPYKA+   VRV  N LL  +++   K K  +++ GKA+  MAR   E ++
Sbjct: 3   IVDKILEYTDPYKALQEKVRVYNNILLFNNEKIPFK-KPILISIGKASLPMARFFRERME 61

Query: 68  VEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISGG 127
           ++  + VT  G     K+  VIEAGHP+PDENSI+     ++LL   ++ D+V   ISGG
Sbjct: 62  LKAKLIVTPKGTNG--KENDVIEAGHPLPDENSIKAGKRMIELLAN-EDYDLVIFAISGG 118

Query: 128 GSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGIVL 187
            SAL E  E  I L++LK+ N++L+ SG  I++IN VRKH+SKVKGGK+ + +K    ++
Sbjct: 119 ASALVEYSE--IPLDELKIINKVLVTSGLGINKINIVRKHLSKVKGGKILEYVKDKIPIV 176

Query: 188 --IISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAE 245
             I+SDV G+++ +I SG T  D ++  DA  IL+  G+     E    ++         
Sbjct: 177 SFIVSDVPGNDISSIGSGLTSIDNSSNDDALEILKAIGL-----EKYSKYLT-------- 223

Query: 246 ETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQE 305
           ET K     + N++I  N      V+ +       ++++T+ + GEA+D G  I SI   
Sbjct: 224 ETPKSFSRIVKNYIILDN----MEVLRKLANTLVNSFILTSEIRGEARDVGAIIASIYNS 279

Query: 306 IAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAI-LVAFDTDG 364
                 PF  P  L+ GGE  VTI+G+ GKGG N E+ LS  +  K  N   L+ F TDG
Sbjct: 280 SESYNIPFRRPYYLLVGGEPEVTIQGKAGKGGRNGEVCLSFLKYAKKRNRFELLGFATDG 339

Query: 365 TDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMI 424
            DG ++ AG  V  +    +  +  +I   L+ HNSY  L+   +++ TG T TNVN++ 
Sbjct: 340 IDGNSEYAGCKVSSD----MEIREDEINNALETHNSYGLLESHKAVIKTGYTHTNVNNIY 395

Query: 425 I 425
           +
Sbjct: 396 V 396


>emb|CAB57636.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
           Length = 400
           
 Score =  222 bits (559), Expect = 8e-57
 Identities = 151/421 (35%), Positives = 231/421 (54%), Gaps = 30/421 (7%)

Query: 8   LVKAAIRAADPYKAVINSVRVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILD 67
           +V   +   DPYKA+   VRV  N LL  +++   K K  +++ GKA+  MAR   E ++
Sbjct: 3   IVDKILEYTDPYKALQEKVRVYNNILLFNNEKIPFK-KPILISIGKASLPMARFFRERME 61

Query: 68  VEDGVAVTKYGYGKELKKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISGG 127
           ++  + VT  G     K+  VIEAGHP+PDENSI+     ++LL   ++ D+V   ISGG
Sbjct: 62  LKAKLIVTPKGTNG--KENDVIEAGHPLPDENSIKAGKRMIELLAN-EDYDLVIFAISGG 118

Query: 128 GSALFELPEDGISLEDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGIVL 187
            SAL E  E  I L++LK+ N++L+ SG  I++IN VRKH+SKVKGGK+ + +K    ++
Sbjct: 119 ASALVEYSE--IPLDELKIINKVLVTSGLGINKINIVRKHLSKVKGGKILEYVKDKIPIV 176

Query: 188 --IISDVVGDNLEAIASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAE 245
             I+SDV G+++ +I SG T  D ++  DA  IL+  G+     E    ++         
Sbjct: 177 SFIVSDVPGNDISSIGSGLTSIDNSSNDDALEILKAIGL-----EKYSKYLT-------- 223

Query: 246 ETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQE 305
           ET K     + N++I  N      V+ +       ++++T+ + GEA+D G  I SI   
Sbjct: 224 ETPKSFSRIVKNYIILDN----MEVLRKLANTLVNSFILTSEIRGEARDVGAIIASIYNS 279

Query: 306 IAKTGNPFEPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAI-LVAFDTDG 364
                 PF  P  L+ GGE  VTI+G+ GKGG N E+ LS  +  K  N   L+ F TDG
Sbjct: 280 SESYNIPFRRPYYLLVGGEPEVTIQGKAGKGGRNGEVCLSFLKYAKKRNRFELLGFATDG 339

Query: 365 TDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMI 424
            DG ++ AG  V  +    +  +  +I   L+ HNSY  L+   +++ TG T TNVN++ 
Sbjct: 340 IDGNSEYAGCKVSSD----MEIREDEINNALETHNSYGLLESHKAVIKTGYTHTNVNNIY 395

Query: 425 I 425
           +
Sbjct: 396 V 396


>emb|CAC11595.1| (AL445064) glycerate kinase related protein [Thermoplasma
           acidophilum]
           Length = 396
           
 Score =  180 bits (452), Expect = 3e-44
 Identities = 129/410 (31%), Positives = 216/410 (52%), Gaps = 33/410 (8%)

Query: 27  RVEGNKLLVKDKEFEIKGKVYVLAFGKAACDMARAIEEILDVE---DGVAVTKYGYGKEL 83
           RV GN   + D +     +++V+ FGKA+ +M+  I + +  +    G+ V         
Sbjct: 12  RVMGNA--IGDLDVSRYSRIFVMGFGKASYEMSEGIRDHVRKKLAYAGIIVPVDQDVSGF 69

Query: 84  KKIRVIEAGHPIPDENSIRGAIEGLKLLEKVKE--EDIVFVLISGGGSALFELPEDGISL 141
            ++ ++   HP     S+  +     LL KVK    D V VLISGGGS+LFE+PE+GI++
Sbjct: 70  PELEILRGTHPYTSSLSVSSS---RTLLSKVKPGPNDAVIVLISGGGSSLFEIPEEGITI 126

Query: 142 EDLKLTNELLLKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGI-VLIISDVVGDNLEAI 200
           + +   ++ ++++ A I+E+NT+R  +S VKGGKLAK +    +   IISDV GD++  I
Sbjct: 127 DQISEISKKMMQASADIYELNTIRSCLSSVKGGKLAKLLYPASVFAYIISDVPGDDVSII 186

Query: 201 ASGPTVKDPTTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAEETLKEELPNIHNFLI 260
           ASGP          ++  L+   +++R    +   IE+ ++    E   E    +   ++
Sbjct: 187 ASGPL---------SENKLDPVAVYERFRNVIGVDIERFLKTAQIE--DEYFRKVQTRIV 235

Query: 261 ASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAGLFIGSIVQEIAK-TGNPFEPPVVL 319
            SN    + +    + +G     + + + G+ +D    I  IV+ +++  G  F     +
Sbjct: 236 LSNRDFVRRI---ESYVGEPIVSIGSGISGDVEDVSDGIIDIVRSVSRIKGRSF----WI 288

Query: 320 VFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAILVAFDTDGTDGPTDAAGGIVDGE 379
           V GGETTV + G  G GG N EL+L   +K    + + ++  TDG DG + AAGGIVD  
Sbjct: 289 VMGGETTVNVRG-NGIGGRNLELSLLFMKKCNFSDFLFISMGTDGIDGVSPAAGGIVDAS 347

Query: 380 TYEKLRRKGIDIEKVLKEHNSYEALKKVGSLLFTGPTGTNVNSMIIAIIT 429
           T  K R    +I++ LK ++SY  L K GS + TG TG NV+ +++A ++
Sbjct: 348 T--KARISSEEIDQALKNNDSYTLLSKYGSAIMTGRTGNNVSDIVVAYVS 395


>gb|AAF51252.1| (AE003583) CG9886 gene product [Drosophila melanogaster]
           Length = 487
           
 Score =  176 bits (441), Expect = 5e-43
 Identities = 133/438 (30%), Positives = 213/438 (48%), Gaps = 57/438 (13%)

Query: 41  EIKGKV-YVLAFGKAACDMARAIEEILDVEDGVAV------TKYGYGKELKKIRVIEAG- 92
           +I GK  +++ FGKA   MA  +++ L       V      T   + + +    V+  G 
Sbjct: 56  DISGKTCHIVGFGKAVLGMANKVQQDLGATSAGGVLSVPVNTLKQFQQPVAPGLVVHEGA 115

Query: 93  -HPIPDENSIRGAIEGLKLLEKVKEEDIVFVLISGGGSALFELPEDGISLEDLKLTNELL 151
            + +PDEN+++ A E  +L EK+  +DI+FV ISGGGSAL  LP   ++LED +   + L
Sbjct: 116 ANNLPDENALKAAREIKQLAEKMTAQDILFVFISGGGSALLPLPRSPLTLEDKRSIADKL 175

Query: 152 LKSGAKIHEINTVRKHISKVKGGKLAKKIKGTGIVL--IISDVVGDNLEAIASGPTVKDP 209
           +K GA I EIN VR   S +KGG+LA+     G+++  ++SD++GD LE IA GPT++ P
Sbjct: 176 MKRGASIQEINAVRIACSDIKGGRLARLAGQAGLLVTFVLSDIIGDPLELIACGPTIQ-P 234

Query: 210 TTFQDAKRILELYGIWDRVPESVRSHIEKGIRGEAEETLKEELPNIHNFLIASNSISCQA 269
                   IL+ + +W+ +   +R   E     + EE     LP    F++ SN I+   
Sbjct: 235 EAAASPSDILKKHHVWEELSPEIRRVFE-----QPEEQKNTSLPEHKVFVVGSNVIATST 289

Query: 270 VVEEATKLGFKAYVMTTTLEG-----------------EAKDAGLFIGSIVQEIAKTGNP 312
              EA +LG+   V++  ++G                 EAK  G+    + ++ A     
Sbjct: 290 AAHEAERLGYIPCVLSCAVQGDVAQVAGDYQRLLHGIQEAKQHGILDPQLREKYAFGERS 349

Query: 313 F-------------EPPVVLVFGGETTVTIEGEGGKGGPNQELALSATRKIKGLNAI--- 356
           +             + P+ L+ GGE  + + G G  GG +Q LAL  ++ +    A+   
Sbjct: 350 YPTFRRALEDHMSSKKPLFLICGGEPVIKVSGHG-LGGRSQHLALLMSQALHRDEAMRDC 408

Query: 357 -LVAFDTDGTDGPTDAAGGIVDGETYEK-LRRKGID-IEKVLKEHNSYEALKKVGS---L 410
             ++  TDG DGPTDAAG   D    E  L    +D + + L+  +SY   K +      
Sbjct: 409 TFLSAGTDGIDGPTDAAGAFGDSSVVESYLGDHTLDELAETLRNCDSYNFYKNLAQGEHH 468

Query: 411 LFTGPTGTNVNSMIIAII 428
           + TG TGTNV  +   ++
Sbjct: 469 VLTGHTGTNVMDLHFLVV 486


>sp|Q09235|YQ42_CAEEL HYPOTHETICAL 40.0 KD PROTEIN C13B9.2 IN CHROMOSOME III
           >gi|687809|gb|AAA62515.1| (U21309) C13B9.2 gene product
           [Caenorhabditis elegans]
           Length = 363
           
 Score =  127 bits (316), Expect = 2e-28
 Identities = 93/268 (34%), Positives = 137/268 (50%), Gaps = 27/268 (10%)

Query: 181 KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFQDA---KRILELYGIWD-RVPESVRSHI 236
           KG  I LIISDV+G+ +E IASGPTV  P   QD      ILE   I    +P +V++ +
Sbjct: 100 KGCSIALIISDVIGNPVELIASGPTVI-PAHQQDKFIISNILESLKINKLELPVNVKNVL 158

Query: 237 EKGIRGEAEETLKEELPNIHNFLIASNSISCQAVVEEATKLGFKAYVMTTTLEGEAKDAG 296
           E       +E L E      NF+I+SN+ + +A  E  T  G+ + ++T++L G A + G
Sbjct: 159 EN----HEKEQLPENTSRFQNFIISSNNFALRAAAEYLTSSGYNSTIVTSSLSGNAAEIG 214

Query: 297 LFIGSIVQEIAKTGNPF---------EPPVVLVFGGETTVTIEGEGGKGGPNQELALSAT 347
                I+ E + T +             P+ L+FGGETTV +    GKGG NQE+ LS  
Sbjct: 215 KKFAEIITEKSITSSHLLKNSNLTIENYPIALLFGGETTVHLSENPGKGGRNQEMVLSCL 274

Query: 348 RKIK----GLNAILVAFDTDGTDGPTDAAGGIVDGETYEKLRRKGIDIEKVLKEHNSY-- 401
             +K      N   ++  TDG DGPTDAAG I+  E  +      ++  + L+  +SY  
Sbjct: 275 DALKTRVPAHNFTFLSAGTDGQDGPTDAAGAIISNE--DLPLNSLLNSSEFLQNSDSYNF 332

Query: 402 -EALKKVGSLLFTGPTGTNVNSMIIAII 428
               K   + + TGP+GTNV  + I ++
Sbjct: 333 WRQFKGGANHILTGPSGTNVMDIQILLL 360


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.137    0.373 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161295734
Number of Sequences: 2977
Number of extensions: 7120986
Number of successful extensions: 15207
Number of sequences better than 1.0e-10: 13
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15136
Number of HSP's gapped (non-prelim): 14
length of query: 435
length of database: 189,106,746
effective HSP length: 61
effective length of query: 374
effective length of database: 152,599,039
effective search space: 57072040586
effective search space used: 57072040586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 166 (69.1 bits)