BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1022 1507691 1508083 131 !not a gene!
         (131 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71161 hypothetical protein PH0492 - Pyrococcus horikoshii ...   169  8e-42
pir||E71155 hypothetical protein PH0444 - Pyrococcus horikoshii ...   123  7e-28

>pir||G71161 hypothetical protein PH0492 - Pyrococcus horikoshii
           >gi|3256897|dbj|BAA29580.1| (AP000002) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score =  169 bits (425), Expect = 8e-42
 Identities = 90/101 (89%), Positives = 95/101 (93%)

Query: 31  MTLTPSLVASTASLISSVILSIMLLILSAACLLSSANFLISWATTANPLPASPALAASIA 90
           MTLTPSLVASTASLISSVILS+ML +LSAACLLSSANFLISWATTANPLPASPALAASIA
Sbjct: 1   MTLTPSLVASTASLISSVILSMMLFMLSAACLLSSANFLISWATTANPLPASPALAASIA 60

Query: 91  AFNASRLVCSAMLVITFVISSMFLLISATFETVSSILDIMC 131
           AF A++ VCSAMLVIT VISSMFLLIS T +TVSSILDIMC
Sbjct: 61  AFKANKFVCSAMLVITLVISSMFLLISETLDTVSSILDIMC 101


>pir||E71155 hypothetical protein PH0444 - Pyrococcus horikoshii
           >gi|3256847|dbj|BAA29530.1| (AP000002) 168aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 168
           
 Score =  123 bits (306), Expect = 7e-28
 Identities = 73/101 (72%), Positives = 80/101 (78%)

Query: 30  PMTLTPSLVASTASLISSVILSIMLLILSAACLLSSANFLISWATTANPLPASPALAASI 89
           P T  P LV ST SLI S I  I  L+ SAA LLSSANFLIS ATTANP PASPALAASI
Sbjct: 2   PTTSAPCLVTSTLSLILSPICLINSLMSSAAFLLSSANFLISSATTANPFPASPALAASI 61

Query: 90  AAFNASRLVCSAMLVITFVISSMFLLISATFETVSSILDIM 130
           AAFNAS+LVCSAML+ITFV+ SMFL +SAT  TVSSI+ I+
Sbjct: 62  AAFNASKLVCSAMLLITFVMFSMFLPMSATPLTVSSIICII 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.131    0.360 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35718551
Number of Sequences: 2977
Number of extensions: 983578
Number of successful extensions: 5523
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5515
Number of HSP's gapped (non-prelim): 4
length of query: 131
length of database: 189,106,746
effective HSP length: 58
effective length of query: 73
effective length of database: 154,394,500
effective search space: 11270798500
effective search space used: 11270798500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 160 (66.7 bits)