BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1023 1510318 1510755 146 !not a gene!
         (146 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71161 hypothetical protein PH0489 - Pyrococcus horikoshii ...   166  1e-40

>pir||D71161 hypothetical protein PH0489 - Pyrococcus horikoshii
           >gi|3256894|dbj|BAA29577.1| (AP000002) 120aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 120
           
 Score =  166 bits (416), Expect = 1e-40
 Identities = 84/120 (70%), Positives = 94/120 (78%)

Query: 20  MSYNDSAGFGGLNETGSPIKLDSMSVYADISMFPTSMIADLPISSNSSMLPGSMPIRTAE 79
           MSY DSAGFGGL ETGSP K + MSVY +I MFPTS+IAD PISS+S MLPGSMP  T  
Sbjct: 1   MSYRDSAGFGGLKETGSPSKFERMSVYTEIRMFPTSIIADFPISSSSVMLPGSMPRSTEL 60

Query: 80  MLRALCFGNWSIVKPERPSVTSNMTVKPFETPLSARSFKNSALETISTSGASISIGPPII 139
           MLRALC GN  IV P+ PSV SN+TV P +TPLSA   +NS  +TISTSGASIS+GPPII
Sbjct: 61  MLRALCLGNCRIVSPDIPSVMSNITVNPLDTPLSASILRNSTRDTISTSGASISMGPPII 120


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51802023
Number of Sequences: 2977
Number of extensions: 1884659
Number of successful extensions: 4748
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4747
Number of HSP's gapped (non-prelim): 1
length of query: 146
length of database: 189,106,746
effective HSP length: 58
effective length of query: 88
effective length of database: 154,394,500
effective search space: 13586716000
effective search space used: 13586716000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)