BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1026 (PAB1026) DE:METHYL-ACCEPTING CHEMOTAXIS PROTEIN
(374 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyroco... 702 0.0
pir||B71160 probable methyl-accepting chemotaxis protein - Pyroc... 447 e-124
pir||A72254 methyl-accepting chemotaxis protein - Thermotoga mar... 173 3e-42
pir||H75006 methyl-accepting chemotaxis related protein PAB1308 ... 154 2e-36
pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii ... 150 2e-35
pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 -... 149 5e-35
pir||D71155 probable methyl-accepting chemotaxis protein - Pyroc... 148 9e-35
dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [... 146 4e-34
pir||E72379 methyl-accepting chemotaxis protein - Thermotoga mar... 145 6e-34
gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium... 145 1e-33
pir||A72428 methyl-accepting chemotaxis protein - Thermotoga mar... 144 1e-33
pir||G72316 methyl-accepting chemotaxis protein - Thermotoga mar... 144 2e-33
pir||C83012 probable chemotaxis transducer PA5072 [imported] - P... 143 3e-33
pir||T48840 transducer protein basT [validated] - Halobacterium ... 142 5e-33
gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium s... 142 5e-33
pir||T44849 transducer protein car [validated] - Halobacterium s... 141 9e-33
dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [... 141 1e-32
pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synech... 141 1e-32
pir||H83324 probable chemotaxis transducer PA2573 [imported] - P... 141 1e-32
gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium... 140 3e-32
dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [... 139 6e-32
pir||T44938 transducer protein htpV [similarity] - Halobacterium... 139 6e-32
sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|1127... 138 7e-32
pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-acc... 138 1e-31
pir||T44964 transducer protein car [validated] - Halobacterium s... 137 2e-31
pir||F72288 methyl-accepting chemotaxis protein - Thermotoga mar... 136 3e-31
pir||C72291 methyl-accepting chemotaxis protein - Thermotoga mar... 136 3e-31
pir||F71197 probable methyl-accepting chemotaxis protein - Pyroc... 136 5e-31
dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [... 136 5e-31
pir||T44978 transducer protein hemAT [validated] - Halobacterium... 135 6e-31
gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium... 135 8e-31
dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [B... 134 1e-30
gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium sa... 132 4e-30
sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 132 7e-30
gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium... 132 7e-30
pir||T44989 transducer protein trII [imported] - Haloarcula vall... 132 7e-30
sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >g... 131 1e-29
dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein Tl... 131 1e-29
pir||E83067 probable chemotaxis transducer PA4633 [imported] - P... 131 1e-29
gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium s... 131 1e-29
sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ pr... 130 2e-29
gb|AAG19428.1| (AE005036) Htr13 transducer; Htr13 [Halobacterium... 130 2e-29
pir||T44253 transducer protein htrVIII [validated] - Halobacteri... 129 4e-29
dbj|BAA23412.1| (D86947) chemotactic transducer [Pseudomonas aer... 129 5e-29
pir||B83107 chemotactic transducer PctA PA4309 [imported] - Pseu... 129 6e-29
pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus ... 129 6e-29
pir||T44276 transducer protein htrXII [similarity] - Halobacteri... 129 6e-29
sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >g... 128 8e-29
gb|AAG19751.1| (AE005061) Htr12 transducer; Htr12 [Halobacterium... 128 1e-28
pir||D82077 methyl-accepting chemotaxis protein VC2439 [imported... 127 1e-28
pir||D83297 probable chemotaxis transducer PA2788 [imported] - P... 127 1e-28
sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H... 127 2e-28
dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [... 127 2e-28
gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium s... 127 2e-28
pir||F70028 transmembrane receptor taxis protein homolog yvaQ - ... 127 2e-28
sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H... 127 2e-28
sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|14... 127 2e-28
sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|112... 127 2e-28
pir||F83280 probable chemotaxis transducer PA2920 [imported] - P... 127 2e-28
pir||T44262 transducer protein htrVI [similarity] - Halobacteriu... 126 4e-28
pir||H83106 chemotactic transducer PctC PA4307 [imported] - Pseu... 125 5e-28
gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium s... 125 5e-28
gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium s... 125 7e-28
pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseu... 125 7e-28
pir||T44258 transducer protein htrXIII [similarity] - Halobacter... 124 1e-27
pir||D82386 methyl-accepting chemotaxis protein VCA1034 [importe... 124 1e-27
sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|7... 124 2e-27
dbj|BAA23413.1| (D86947) chemotactic transducer [Pseudomonas aer... 124 2e-27
gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archae... 124 2e-27
pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] ... 124 2e-27
gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium s... 124 2e-27
gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus... 123 3e-27
sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 123 4e-27
gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archae... 122 5e-27
pir||A83451 aerotaxis receptor Aer PA1561 [imported] - Pseudomon... 122 5e-27
dbj|BAA23410.1| (D86947) chemotactic transducer [Pseudomonas aer... 122 8e-27
pir||G82490 methyl-accepting chemotaxis protein VCA0176 [importe... 122 8e-27
gb|AAA23567.1| (M13463) sensory transducer protein [Escherichia ... 120 2e-26
sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 120 2e-26
sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 120 2e-26
sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|112... 120 2e-26
pir||E82431 methyl-accepting chemotaxis protein VCA0663 [importe... 120 2e-26
sp|P07018|MCP4_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN IV (MCP... 120 3e-26
gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [P... 120 3e-26
dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [... 120 3e-26
gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium s... 120 3e-26
sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDU... 119 4e-26
dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [... 119 4e-26
sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >g... 119 5e-26
pir||H82379 methyl-accepting chemotaxis protein VCA1092 [importe... 119 5e-26
sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 118 7e-26
pir||S56581 methyl-accepting chemotaxis protein I - Escherichia ... 118 7e-26
pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synech... 118 7e-26
pir||T44606 transducer protein htpIV [similarity] - Halobacteriu... 118 7e-26
pir||H82503 methyl-accepting chemotaxis protein VCA0068 [importe... 118 7e-26
pir||A83314 probable chemotaxis transducer PA2654 [imported] - P... 118 7e-26
emb|CAA23676.1| (V00373) serine chemoreceptor [Escherichia coli]... 118 9e-26
sp|P02942|MCP1_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN I (MCP-... 118 9e-26
gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium... 118 9e-26
sp|P29486|TCPI_VIBCH TOXIN CORREGULATED PILUS BIOSYNTHESIS PROTE... 117 2e-25
pir||C82314 methyl-accepting chemotaxis protein VC0512 [imported... 117 2e-25
pir||D82274 toxin co-regulated pilus biosynthesis protein I VC08... 117 2e-25
pir||C83440 probable chemotaxis transducer PA1646 [imported] - P... 117 2e-25
pir||T44973 transducer protein htpIII [similarity] - Halobacteri... 117 2e-25
pir||C83490 probable chemotaxis transducer PA1251 [imported] - P... 117 2e-25
gb|AAB50497.1| (U30319) DcrH [Desulfovibrio vulgaris] 116 3e-25
pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 ... 116 3e-25
sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MC... 116 3e-25
gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis ... 116 4e-25
emb|CAB99193.1| (AJ293587) hypothetical protein [Pseudomonas put... 116 4e-25
pir||F82383 methyl-accepting chemotaxis protein VCA1056 [importe... 116 4e-25
pir||E83041 probable chemotaxis transducer PA4844 [imported] - P... 116 4e-25
pir||JQ1475 probable methyl-accepting chemotaxis protein - Esche... 116 5e-25
sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|4777... 116 5e-25
gb|AAF61289.1|AF064528_2 (AF064528) phototransducer; methyl-acce... 116 5e-25
pir||A82320 methyl-accepting chemotaxis protein VC0449 [imported... 116 5e-25
pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported... 115 6e-25
pir||H82143 methyl-accepting chemotaxis protein VC1898 [imported... 115 6e-25
pir||A82513 methyl-accepting chemotaxis protein VCA0008 [importe... 115 6e-25
sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >g... 115 8e-25
pir||H83445 probable chemotaxis transducer PA1608 [imported] - P... 115 8e-25
pir||T44597 transducer protein htpVI [similarity] - Halobacteriu... 115 1e-24
gb|AAA23566.1| (M13463) methyl-accepting chemotaxis protein II [... 114 1e-24
sp|P07017|MCP2_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP... 114 1e-24
gb|AAC46420.1| (AF036168) putative methyl accepting chemotaxis p... 114 1e-24
pir||G82401 methyl-accepting chemotaxis protein VCA0923 [importe... 114 1e-24
gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium... 114 1e-24
sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOT... 114 2e-24
sp|P35841|DCRA_DESVH CHEMORECEPTOR PROTEIN A >gi|282156|pir||A42... 114 2e-24
pir||G64532 methyl-accepting chemotaxis protein - Helicobacter p... 114 2e-24
pir||E82419 methyl-accepting chemotaxis protein VCA0773 [importe... 114 2e-24
dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [... 114 2e-24
pir||A29053 aspartate chemoreceptor protein - Salmonella typhimu... 113 3e-24
pir||F82382 methyl-accepting chemotaxis protein VCA1069 [importe... 113 3e-24
pir||G83313 probable chemotaxis transducer PA2652 [imported] - P... 113 3e-24
pir||QREBDT aspartate chemoreceptor protein - Salmonella typhimu... 113 4e-24
sp|P02941|MCP2_SALTY METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP... 113 4e-24
pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported... 113 4e-24
pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog ... 112 5e-24
pir||F71975 methyl-accepting chemotaxis protein (MCP) - Helicoba... 112 5e-24
pir||E82314 methyl-accepting chemotaxis protein VC0514 [imported... 112 5e-24
pir||F82392 methyl-accepting chemotaxis protein VCA0988 [importe... 112 5e-24
pir||G70184 methyl-accepting chemotaxis protein (mcp-4) homolog ... 112 7e-24
pir||B82204 methyl-accepting chemotaxis protein VC1413 [imported... 112 7e-24
pir||H82402 methyl-accepting chemotaxis protein VCA0906 [importe... 112 7e-24
pir||H83286 probable chemotaxis transducer PA2867 [imported] - P... 112 7e-24
pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported... 111 1e-23
sp|P21822|MCPS_ENTAE METHYL-ACCEPTING CHEMOTAXIS SERINE TRANSDUC... 111 2e-23
pir||G82618 pilus biogenesis protein XF1953 [imported] - Xylella... 111 2e-23
pir||G82365 methyl-accepting chemotaxis protein VC0098 [imported... 110 2e-23
gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [T... 109 4e-23
pir||C83080 probable chemotaxis transducer PA4520 [imported] - P... 109 4e-23
dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [... 109 5e-23
pir||D82218 methyl-accepting chemotaxis protein VC1289 [imported... 109 6e-23
pir||F82148 methyl-accepting chemotaxis protein VC1859 [imported... 108 1e-22
dbj|BAB04224.1| (AP001508) methyl-accepting chemotaxis protein [... 108 1e-22
pir||E82395 methyl-accepting chemotaxis protein VCA0974 [importe... 107 2e-22
dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [... 107 2e-22
pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - B... 107 2e-22
pir||H81431 methyl-accepting chemotaxis signal transduction prot... 106 3e-22
pir||E81444 probable methyl-accepting chemotaxis signal transduc... 106 3e-22
pir||B81251 probable methyl-accepting chemotaxis signal transduc... 106 3e-22
gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis p... 106 5e-22
gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis ... 106 5e-22
pir||D75590 methyl-accepting chemotaxis protein - Deinococcus ra... 105 7e-22
gb|AAG34156.1|AF312878_1 (AF312878) methyl-accepting chemotaxis ... 105 7e-22
gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis ... 105 7e-22
pir||E82481 methyl-accepting chemotaxis protein VCA0268 [importe... 105 9e-22
pir||C81389 probable MCP-type signal transduction protein Cj0448... 104 2e-21
pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported... 104 2e-21
emb|CAB54058.1| (AJ245436) methyl-accepting chemotaxis protein, ... 104 2e-21
pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported... 103 3e-21
pir||E82508 methyl-accepting chemotaxis protein VCA0031 [importe... 102 8e-21
pir||F82217 methyl-accepting chemotaxis protein VC1298 [imported... 101 1e-20
gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum] 99 5e-20
pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1... 99 5e-20
pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported... 98 2e-19
pir||T03461 methyl-accepting chemotaxis protein mcpA - Rhodobact... 96 4e-19
pir||H81324 probable MCP-domain signal transduction protein Cj11... 96 8e-19
pir||G64594 hemolysin secretion protein precursor - Helicobacter... 94 2e-18
gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [T... 94 3e-18
pir||C69832 methyl-accepting chemotaxis protein homolog yhfV - B... 93 4e-18
pir||E82379 methyl-accepting chemotaxis protein VCA1088 [importe... 92 9e-18
pir||F81417 MCP-domain signal transduction protein Cj0019c [impo... 89 1e-16
pir||G71298 probable methyl-accepting chemotaxis protein (mcp2-3... 87 2e-16
emb|CAA05367.1| (AJ002392) chemotactic receptor I [Leptospirillu... 83 3e-15
pir||D70174 methyl-accepting chemotaxis protein (mcp-3) homolog ... 80 4e-14
pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) ... 72 8e-12
pir||A70172 methyl-accepting chemotaxis protein (mcp-1) homolog ... 72 1e-11
gb|AAC72233.1| (AF092090) cp151 [Rattus norvegicus] 70 3e-11
gb|AAC69932.2| (AC005700) putative myosin heavy chain [Arabidops... 69 7e-11
>pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyrococcus abyssi
(strain Orsay) >gi|5458976|emb|CAB50462.1| (AJ248288)
METHYL-ACCEPTING CHEMOTAXIS PROTEIN [Pyrococcus abyssi]
Length = 374
Score = 702 bits (1792), Expect = 0.0
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MKNSILSLISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEV 60
MKNSILSLISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEV
Sbjct: 1 MKNSILSLISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEV 60
Query: 61 LKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVK 120
LKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVK
Sbjct: 61 LKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVK 120
Query: 121 IAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREM 180
IAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREM
Sbjct: 121 IAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREM 180
Query: 181 SDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELA 240
SDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELA
Sbjct: 181 SDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELA 240
Query: 241 DRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETA 300
DRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETA
Sbjct: 241 DRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETA 300
Query: 301 NMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEIT 360
NMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEIT
Sbjct: 301 NMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEIT 360
Query: 361 KLKENIDRIMGEIS 374
KLKENIDRIMGEIS
Sbjct: 361 KLKENIDRIMGEIS 374
>pir||B71160 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256884|dbj|BAA29567.1| (AP000002) 277aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 277
Score = 447 bits (1137), Expect = e-124
Identities = 230/275 (83%), Positives = 263/275 (95%)
Query: 99 VKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEK 158
+++GDL EVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFA+ES+SMAEK
Sbjct: 1 MEIGDLNEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFAVESSSMAEK 60
Query: 159 GRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIE 218
G++ISDNVALKVS+ISETSREMS+A+ ILAEYSKKI++IVYVISSIASQTNLLALNASIE
Sbjct: 61 GKEISDNVALKVSKISETSREMSNAISILAEYSKKIDEIVYVISSIASQTNLLALNASIE 120
Query: 219 AARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEV 278
AARAGEAGRGFAVVAENVRELADRSKK+AE+IR+LI+EMQEN NRVI+AIQENV+VTEEV
Sbjct: 121 AARAGEAGRGFAVVAENVRELADRSKKAAEQIRDLIKEMQENTNRVIEAIQENVKVTEEV 180
Query: 279 KEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFA 338
KEAIQ LIAAFDDIARRANETA MVKELSEGIDEQANSVQMLV+RIDSISKDVSDNLNFA
Sbjct: 181 KEAIQELIAAFDDIARRANETATMVKELSEGIDEQANSVQMLVERIDSISKDVSDNLNFA 240
Query: 339 TQLTDTISGSLEKLNEVKEEITKLKENIDRIMGEI 373
TQLT+T+ GS+EKL +K ++++LK+ +D+ + ++
Sbjct: 241 TQLTETVKGSIEKLEVIKNKVSQLKDELDKTLEKL 275
>pir||A72254 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981993|gb|AAD36498.1|AE001795_1 (AE001795)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 566
Score = 173 bits (434), Expect = 3e-42
Identities = 111/382 (29%), Positives = 209/382 (54%), Gaps = 32/382 (8%)
Query: 4 SILSLISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKK 63
S++ + I +FF Y + ++A+++ L + G + + + + +DE L
Sbjct: 194 SVIGIAVIIMIFF------YGRVLSRKTKAVLSALEKISSG-DLSVSVDIKSKDEFGL-- 244
Query: 64 VAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVK------LGDLGEVNELVSR-LNN 116
+A +L G + +I+ ++ +E + E++ + L ++ ++ +S+ + N
Sbjct: 245 IAQKLNETVGNLRKMVQEIDKSQDEVERVSEELFALSQQLRSALEEIARASDTISKEVQN 304
Query: 117 ENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISET 176
+ I EV + +SA + ++ Q++S+ A A A G+++ + KV +SE
Sbjct: 305 ASASIEEVTSGSEEVSANSQNISKLIQEISENADNIADFARNGQRVLEEAVKKVEDVSEN 364
Query: 177 SREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENV 236
SRE +D V + E ++ I +IV I SIA QTNLLALNA+IEAARAGEAGRGFAVVA+ +
Sbjct: 365 SRETADVVSNVTESARNIEEIVRTIQSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEI 424
Query: 237 RELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKE--------------AI 282
R+LA+ S+K+ EEI ++E ++E + R + ++NV +T++ + I
Sbjct: 425 RKLAEESQKATEEISQILENIREGVERTNEMSKKNVEITKDARRLVEESYESFNQIVTRI 484
Query: 283 QNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLT 342
++L A + IA A E + +E+S +D A + + D ++ +S+++++ A ++
Sbjct: 485 EDLAARIEGIAASAQELSAASEEMSSALDAVAKTTTTVADEVEEVSENITEQEKAAKRIA 544
Query: 343 DTISGSLEKL-NEVKEEITKLK 363
D I L+KL +E+KE++ + K
Sbjct: 545 D-IGTELKKLSDELKEDVERFK 565
>pir||H75006 methyl-accepting chemotaxis related protein PAB1308 - Pyrococcus
abyssi (strain Orsay) >gi|5459008|emb|CAB50494.1|
(AJ248288) METHYL-ACCEPTING CHEMOTAXIS RELATED PROTEIN
[Pyrococcus abyssi]
Length = 435
Score = 154 bits (385), Expect = 2e-36
Identities = 96/324 (29%), Positives = 175/324 (53%), Gaps = 18/324 (5%)
Query: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE 117
E++ K ++ + + I+V++ + +KE IE + + + +V +N++ E
Sbjct: 106 EDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEA----INQVSIEAQRE 161
Query: 118 NVKIAEVND---YIQTLS----AGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKV 170
I+++ D YI +S + +EE ++++ A E EKGRQ +D ++
Sbjct: 162 QENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGG---EKGRQAAD----QI 214
Query: 171 SRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFA 230
IS ++ + VR +AE K I +I VISSI+ QTNLLALNA+IEAARAGEAG+GFA
Sbjct: 215 EEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFA 274
Query: 231 VVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFD 290
VVA+ +R+LA+ SKK+AE+IR LI+++ + I ++ Q+ V + E I+ ++
Sbjct: 275 VVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLT 334
Query: 291 DIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLE 350
+A E EL E + ++ ++ + +++++ + A +++
Sbjct: 335 QVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSS 394
Query: 351 KLNEVKEEITKLKENIDRIMGEIS 374
L E++E + +L +D +M +IS
Sbjct: 395 ALQELRESVKELDRLVDVLMEQIS 418
>pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii
>gi|3256896|dbj|BAA29579.1| (AP000002) 739aa long
hypothetical chemotaxis protein [Pyrococcus horikoshii]
Length = 739
Score = 150 bits (376), Expect = 2e-35
Identities = 85/320 (26%), Positives = 173/320 (53%), Gaps = 8/320 (2%)
Query: 59 EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNEN 118
E +K V L+ G +++ +++E + + + E + +VNE + +++ E
Sbjct: 420 EDIKSVTNTLRTSIGSLVDMANELEKRANALAQISNDVTEA----INQVNEAIQQVSVEA 475
Query: 119 VK----IAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRIS 174
+ I E+ + ++ ++ EE ++ E S+A +G Q D+ ++ I
Sbjct: 476 QRQQETINEITEGMRLVAQTSEESVKAMEEFEGAVSEVVSIANEGSQKGDDALKRIEDIQ 535
Query: 175 ETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAE 234
+ + V ++E S+ I +I VI+SIA QTNLLALNA+IEAARAGEAGRGFAVVA+
Sbjct: 536 HMMSRIEETVSKVSEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQ 595
Query: 235 NVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIAR 294
+R+LA+ SK++A+ I+++I+++ + I ++A +E V V + E +++ I +IA
Sbjct: 596 EIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVNVIGQSSETLRDTIGYLANIAT 655
Query: 295 RANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNE 354
ET+ + E+ + I + V + +++++ + A +++ + + E
Sbjct: 656 LLQETSERMSEVKDQIVKTQEEVDKSLRALENLAASAEETTASAEEVSSAVEEQTASIEE 715
Query: 355 VKEEITKLKENIDRIMGEIS 374
++ +L++ ++++ G I+
Sbjct: 716 LRRAAQELRDIVEKMRGIIA 735
>pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 - Pyrococcus
abyssi (strain Orsay) >gi|5458968|emb|CAB50454.1|
(AJ248288) methyl-accepting chemotaxis protein (tlpC)
[Pyrococcus abyssi]
Length = 739
Score = 149 bits (372), Expect = 5e-35
Identities = 92/316 (29%), Positives = 166/316 (52%), Gaps = 24/316 (7%)
Query: 78 VKDKIENLKEVIENLEEKIGE-VKLGD-------------------LGEVNELVSRLNNE 117
++D IE+++ V E E IG V++ + + +VNE + +++ E
Sbjct: 415 LRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIE 474
Query: 118 NVK----IAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRI 173
+ I E+ D ++ ++ EE ++ S E S+A +G Q D ++ I
Sbjct: 475 AQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDI 534
Query: 174 SETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVA 233
+ + V +AE S+ I +I VI+SIA QTNLLALNA+IEAARAGEAGRGFAVVA
Sbjct: 535 QHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVA 594
Query: 234 ENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIA 293
+ +R+LA+ SK++A+ I+++I+++ + I ++A +E V V E E +++ I +IA
Sbjct: 595 QEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIA 654
Query: 294 RRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLN 353
ET+ + + E I V + +++++ + A +++ I +
Sbjct: 655 TLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
Query: 354 EVKEEITKLKENIDRI 369
E++ +LK+ + R+
Sbjct: 715 ELRRAAQELKDMVGRM 730
>pir||D71155 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256846|dbj|BAA29529.1| (AP000002) 428aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 428
Score = 148 bits (370), Expect = 9e-35
Identities = 94/332 (28%), Positives = 176/332 (52%), Gaps = 12/332 (3%)
Query: 53 LSKEDEEVLKKVAFRLKRG--------QGKKINVKDK---IENLKEVIENLEEKIGEVKL 101
LS ED E+ ++A +++ G G +NVK+ ++N +V+++ E+I E
Sbjct: 81 LSVEDSEISGELA-KIREGIEKLRQSISGLVLNVKNAAIDVKNHAKVMKDNIEQIAEAVA 139
Query: 102 GDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQ 161
+N++ + E I+++ + ++ ++ +E ++ E A +A++G +
Sbjct: 140 QVAEAINQVSAEAQREQENISKMTETMRYINDISKETVSTMEEFEASMREMAQLAKEGGE 199
Query: 162 ISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAAR 221
A ++ IS + + + VR +A+ K I +I VISSIA QTNLLALNA+IEAAR
Sbjct: 200 KGRMAATQIEEISRMMQMIEETVRGVADMGKNIENITNVISSIAEQTNLLALNAAIEAAR 259
Query: 222 AGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEA 281
AGEAG+GFAVVA+ +R+LA+ SKK+AE+IR LI+++ + I+ ++ ++ V E
Sbjct: 260 AGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKISESVEVTKQGAEVVGTSTEV 319
Query: 282 IQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQL 341
I+ + +A E EL E + ++ ++ + +++++ + A ++
Sbjct: 320 IKESVNYLTQVAEMMEEMEAKASELREKVIQEGEKIEEGLKFLENLAASAEETTAAAEEV 379
Query: 342 TDTISGSLEKLNEVKEEITKLKENIDRIMGEI 373
+ L E+KE + +L +D +M I
Sbjct: 380 SAAAEEQSSALQELKESVKELDRLVDVLMEHI 411
>dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 401
Score = 146 bits (364), Expect = 4e-34
Identities = 89/297 (29%), Positives = 167/297 (55%), Gaps = 7/297 (2%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
NV +K ENL E+ E EK V+ ++E+ LN + V E ++ ++ IE
Sbjct: 84 NVHEKGENLAEIGEYATEKADIVRAA----IDEVGRGLNKQLVATEENAMSMEEMTQAIE 139
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
+++ ++ ++S+ + + + ++G + + K+ ++++T DA+ L E S +I
Sbjct: 140 DLSQRSNEISELSNTTLDLTQEGSEKLKDSLEKMKQLNQTINTTYDAINKLGEKSHEIGM 199
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
IV VI+ I+ Q NLLALNASIEAARAGE G+GFAVVA+ VR+LA++S++S+ E+ N+++
Sbjct: 200 IVKVITGISEQINLLALNASIEAARAGEHGKGFAVVADEVRKLAEQSRQSSSEVSNIVKN 259
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDI---ARRANETANMVKELSEGIDEQ 313
+QE V+ ++Q+ E+ I + A F+ I R E +E +
Sbjct: 260 IQEETGIVVGSMQKGTEEFEDTNTTIVEVGAMFEKILTATRTIAENNGNSSASTEELSAA 319
Query: 314 ANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIM 370
+ + ++ I SIS++ + T+++D +LEKL + + + LK+++++++
Sbjct: 320 SQQIMTTIEEIASISRESVEMFEELTEISDDELSTLEKLVQEAKPLLALKQDVNQLL 376
>pir||E72379 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980935|gb|AAD35514.1|AE001721_13 (AE001721)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 145 bits (363), Expect = 6e-34
Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 3/316 (0%)
Query: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE 117
EE LK+ A LK I ++ E I+ L E+ ++ E +++ NN
Sbjct: 336 EESLKEAALSLKEMIVSIIEAAKELSGASEEIKVLSEESHKMSENLHEEAKKILDEANNM 395
Query: 118 NVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETS 177
+ + EV ++ ++A + ++ Q L++ + A +G + + V ++++ ++
Sbjct: 396 SSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREGTERVEAVGGVINKLKGSA 455
Query: 178 REMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVR 237
D +R L + +K I +IV ISSIA QTNLLALNA+IEAARAGEAGRGFAVVA+ +R
Sbjct: 456 ERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIR 515
Query: 238 ELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRAN 297
+LA+ S+++ E+I ++ ++ I V +E +E+ + + F +I R
Sbjct: 516 KLAEESQRATEDIAKMLSSLRTTIEHVENGSKEMFEGVDEIAVMGEEVTKRFREILGRIE 575
Query: 298 ETANMVKELSEGIDEQANSVQMLVDRIDSISK---DVSDNLNFATQLTDTISGSLEKLNE 354
E +M++ + EQ + + + +D+++K V ++LN L + + S K+++
Sbjct: 576 EINSMIENTAATAQEQGAAAEEMASAMDNVTKIVEGVVESLNRMESLIEDQTTSAAKVSQ 635
Query: 355 VKEEITKLKENIDRIM 370
E +++L E + ++
Sbjct: 636 AAERLSELSEQLSTLV 651
>gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium sp. NRC-1]
Length = 636
Score = 145 bits (361), Expect = 1e-33
Identities = 80/290 (27%), Positives = 158/290 (53%), Gaps = 7/290 (2%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
D+ E L ++ +++ + + ++ ++++N ++ + ++ SA ++E+
Sbjct: 349 DQFERLVGQVDGQTQELADTIERATADATDIADTVSSQNEMLSSAANEMENFSASMQEVA 408
Query: 140 VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVY 199
+ Q++ A ++ AE G + S+ + + + S ++ ++V L +I D+V
Sbjct: 409 ASSDQVASAAEQAQDAAESGLEASEGANQATNEVIDISDDLMESVSKLESRMDEIEDVVE 468
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQE 259
VI+ +A QTNLLALNA+IEAARAGEAG GFAVVA+ V+ELA+ +++ E I I ++Q+
Sbjct: 469 VIAEVADQTNLLALNANIEAARAGEAGSGFAVVADEVKELANETREHTERIAGSISDVQQ 528
Query: 260 NINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQM 319
N + A++E+ + I + + A ++IA +E A + E++ DEQA++V+
Sbjct: 529 QANETVLAVEESHEQIHRAGDEIDDALTALEEIATSVDEAATGITEVARANDEQASTVED 588
Query: 320 LVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRI 369
++ I+ DV A +D I + + E +++L E +D++
Sbjct: 589 VIVTIE----DVQQQAEEAAAASDRIVSATQ---EQSTAVSQLSERVDKL 631
>pir||A72428 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980507|gb|AAD35117.1|AE001690_11 (AE001690)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 144 bits (360), Expect = 1e-33
Identities = 88/316 (27%), Positives = 166/316 (51%), Gaps = 3/316 (0%)
Query: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE 117
EE LK+ LK I ++ E I+ L E+ ++ E +++ NN
Sbjct: 336 EESLKEAVLSLKEMIVSIIEASKELSGASEEIKVLSEESHKMSENLHEEAKKILDEANNM 395
Query: 118 NVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETS 177
+ + EV ++ ++A + ++ Q L++ + A +G + + V ++++ ++
Sbjct: 396 SSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREGTERVEAVGGVINKLKGSA 455
Query: 178 REMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVR 237
D +R L + +K I +IV ISSIA QTNLLALNA+IEAARAGEAGRGFAVVA+ +R
Sbjct: 456 ERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIR 515
Query: 238 ELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRAN 297
+LA+ S+++ E+I ++ ++ I V +E +E+ + + F +I R
Sbjct: 516 KLAEESQRATEDIAKMLSSLRATIEHVENGSKEMFEGVDEIAVMGEEVTKRFREILGRIE 575
Query: 298 ETANMVKELSEGIDEQANSVQMLVDRIDSISK---DVSDNLNFATQLTDTISGSLEKLNE 354
E +M++ + EQ + + + +D+++K V ++LN L + + S +++E
Sbjct: 576 EINSMIENTAATAQEQGAAAEEMASAMDNVTKIVEGVVESLNRMESLIEDQTESAARVSE 635
Query: 355 VKEEITKLKENIDRIM 370
E +++L E + ++
Sbjct: 636 AAERLSELSEQLSTLV 651
>pir||G72316 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981455|gb|AAD35999.1|AE001756_2 (AE001756)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 661
Score = 144 bits (359), Expect = 2e-33
Identities = 88/316 (27%), Positives = 166/316 (51%), Gaps = 3/316 (0%)
Query: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE 117
EE LK+ LK I ++ E I+ L E+ ++ E +++ NN
Sbjct: 341 EESLKEAVLSLKEMIVSIIEAAKELSGASEEIKVLSEESHKMSENLHEEAKKILDEANNM 400
Query: 118 NVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETS 177
+ + EV ++ ++A + ++ Q L++ + A +G + + V ++++ ++
Sbjct: 401 SSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREGTERVEAVGGVINKLKGSA 460
Query: 178 REMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVR 237
D +R L + +K I +IV ISSIA QTNLLALNA+IEAARAGEAGRGFAVVA+ +R
Sbjct: 461 ERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIR 520
Query: 238 ELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRAN 297
+LA+ S+++ E+I ++ ++ I V +E +E+ + + F +I R
Sbjct: 521 KLAEESQRATEDIAKMLSSLRTTIEHVENGSKEMFEGVDEIAVMGEEVTKRFREILGRIE 580
Query: 298 ETANMVKELSEGIDEQANSVQMLVDRIDSISK---DVSDNLNFATQLTDTISGSLEKLNE 354
E +M++ + EQ + + + +D+++K V ++LN L + + S K+++
Sbjct: 581 EINSMIENTAATAQEQGAAAEEMASAMDNVTKIVEGVVESLNRMESLIEDQTTSAAKVSQ 640
Query: 355 VKEEITKLKENIDRIM 370
E +++L E + ++
Sbjct: 641 AAERLSELSEQLSTLV 656
>pir||C83012 probable chemotaxis transducer PA5072 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951365|gb|AAG08457.1|AE004920_7 (AE004920) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 647
Score = 143 bits (357), Expect = 3e-33
Identities = 92/314 (29%), Positives = 164/314 (51%), Gaps = 20/314 (6%)
Query: 44 GKEPQIPLGLSKEDE-----EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGE 98
GK PQ PL L + DE V++++ L+ G+ + D + L E L +
Sbjct: 336 GKRPQNPLTLQRRDELGQLQRVMQRMGDSLRELVGR---ISDGVSQLASSAEELSAVTEQ 392
Query: 99 VKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEK 158
+ G +N++ V+ +V + ++A ++++ A+ S A ++ A +
Sbjct: 393 TRAG-----------VNSQKVETDQVATAMHEMAATVQDVARNAELASQAARQADEEARQ 441
Query: 159 GRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIE 218
G + D ++ R++ S+A+ L S++I ++ VI S+A QTNLLALNA+IE
Sbjct: 442 GDAVVDQAVTRIERLASEMDVSSEAMARLKNESEQIGSVLDVIKSVAEQTNLLALNAAIE 501
Query: 219 AARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEV 278
AARAG+AGRGFAVVA+ VR LA R+++S EI LI+ +Q+ + ++ + +T
Sbjct: 502 AARAGDAGRGFAVVADEVRGLAQRTQQSTAEIEGLIQRLQQGAGEAAERLENSRSLTAST 561
Query: 279 KEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFA 338
E + AA D I R ++ NM +++ ++Q+ + + + S+ +DV++ A
Sbjct: 562 VELARRAGAALDSITRTVSDIQNMNLQIATAAEQQSTVAEEINRSVLSV-RDVAEQSAAA 620
Query: 339 TQLTDTISGSLEKL 352
++ T SG L +L
Sbjct: 621 SEQTAASSGELARL 634
>pir||T48840 transducer protein basT [validated] - Halobacterium salinarum
>gi|7327959|emb|CAB82572.1| (AJ245950) chemotaxis
transducer protein BasT [Halobacterium salinarum]
Length = 805
Score = 142 bits (355), Expect = 5e-33
Identities = 83/263 (31%), Positives = 149/263 (56%), Gaps = 3/263 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V ++ + + + ++ V D + +LSA +EE+ A +++ ++A+ +E+G+++ ++
Sbjct: 524 VQDISADADQQRDRLGTVGDEVTSLSATVEEIAASADDVAETVNQAATESERGQELGEDA 583
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ RI T+ + V L E I D+ VI+ IA QTN+LALNA+IEAARA ++G
Sbjct: 584 VAELERIEATADSAVERVTALEEAVDAIGDVTGVITDIAEQTNMLALNANIEAARADKSG 643
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LAD K+SA EI L++++Q ++ + + E + E I+ +
Sbjct: 644 DGFAVVADEVKDLADEVKESATEIETLVDDVQADVADTVADMSELGDRVDAGSETIEAAL 703
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
AA DDI + V+ +S+ DEQA S + +V ID ++ D+SD AT+ +
Sbjct: 704 AALDDIGDQVEAANGSVQSISDATDEQAASTEEVVTMIDEVT-DLSDRT--ATESQQVSA 760
Query: 347 GSLEKLNEVKEEITKLKENIDRI 369
+ E+ V E + + D++
Sbjct: 761 AAEEQAASVSEVAGRADDLDDQV 783
>gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium sp. NRC-1]
Length = 633
Score = 142 bits (355), Expect = 5e-33
Identities = 83/263 (31%), Positives = 149/263 (56%), Gaps = 3/263 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V ++ + + + ++ V D + +LSA +EE+ A +++ ++A+ +E+G+++ ++
Sbjct: 352 VQDISADADQQRDRLGTVGDEVTSLSATVEEIAASADDVAETVNQAATESERGQELGEDA 411
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ RI T+ + V L E I D+ VI+ IA QTN+LALNA+IEAARA ++G
Sbjct: 412 VAELERIEATADSAVERVTALEEAVDAIGDVTGVITDIAEQTNMLALNANIEAARADKSG 471
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LAD K+SA EI L++++Q ++ + + E + E I+ +
Sbjct: 472 DGFAVVADEVKDLADEVKESATEIETLVDDVQADVADTVADMSELGDRVDAGSETIEAAL 531
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
AA DDI + V+ +S+ DEQA S + +V ID ++ D+SD AT+ +
Sbjct: 532 AALDDIGDQVEAANGSVQSISDATDEQAASTEEVVTMIDEVT-DLSDRT--ATESQQVSA 588
Query: 347 GSLEKLNEVKEEITKLKENIDRI 369
+ E+ V E + + D++
Sbjct: 589 AAEEQAASVSEVAGRADDLDDQV 611
>pir||T44849 transducer protein car [validated] - Halobacterium salinarum
(strain S9) >gi|4469246|emb|CAB38318.1| (AJ132321) Car
protein [Halobacterium salinarum]
Length = 452
Score = 141 bits (353), Expect = 9e-33
Identities = 87/304 (28%), Positives = 163/304 (53%), Gaps = 17/304 (5%)
Query: 77 NVKDKIENLKE-------VIENLEEKIGEVK--LGDLGEVNELVSRLNNENVKIAE-VND 126
++ +K++N +E V N+ E + E+ + ++G E E ++ E V D
Sbjct: 155 DISEKVKNQRELHDLHETVSSNVGEHLSELSESIDEVGSFAEETEAFAGEEIERMEGVAD 214
Query: 127 YIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRI 186
+ SA IEE+ A+++S + + A +G Q ++ ++ + E++ ++D +
Sbjct: 215 EVSNQSATIEEIASSAEEVSQASQRAQDRATEGEQTAETAIDRMGAVQESAERVNDTIDG 274
Query: 187 LAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKS 246
L + ++++I+ I+ IA QTN+LALNASIEAARAGE G GFAVVA+ V+ LA+ S++
Sbjct: 275 LTSQADEMSEIIDAINDIADQTNMLALNASIEAARAGEKGEGFAVVADEVKSLAEESQER 334
Query: 247 AEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKEL 306
A+EI +I EM E ++ I + EE A++ + + +I + +ETA VKE+
Sbjct: 335 ADEIEQMIVEMVETTDQTADRIGQTTTEIEEAITAVRETLDSLQEIRKAVDETATGVKEV 394
Query: 307 SEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENI 366
+ D+ A S + + D + D L T+L D + + +E + + ++++ +
Sbjct: 395 AGATDDHAASTEQVAATTD----EAVDKL---TELEDRLDNLSQIASEQHDRVAEIEDMV 447
Query: 367 DRIM 370
D ++
Sbjct: 448 DELV 451
>dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 579
Score = 141 bits (352), Expect = 1e-32
Identities = 89/342 (26%), Positives = 181/342 (52%), Gaps = 14/342 (4%)
Query: 41 VLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKI-----NVKDKIENLKEVIENLEEK 95
+ +G PL + DE +F L +KI N +++ E + E+
Sbjct: 237 IAEGNLTVEPLKVKNRDEIGDLAASFNLMVENLRKIILEVGNNAEQVAASSEQLTASAEE 296
Query: 96 IGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASM 155
++ + V + ++N+ K+ + + +S I ++ A+++S ++E++
Sbjct: 297 TSKITEQIVSTVQTVTQGVDNQVEKVEYTHKIVGDMSEDIRKIAENAKEVSTTSMEASEK 356
Query: 156 AEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNA 215
+ G+Q+ + + +++ I+++ + + ++ + + SK+IN IV VI+ I+ QTNLLALNA
Sbjct: 357 SSAGKQVIETLVKQMTLINQSVSGLDEIIKGMRDNSKEINQIVKVITEISDQTNLLALNA 416
Query: 216 SIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVT 275
+IEAARAGEAG+GF+VVA+ VR+LA+++ SA++I NLI +Q+ + QA+Q T
Sbjct: 417 AIEAARAGEAGKGFSVVADEVRKLAEQTSLSAKQISNLISNVQKETD---QAVQSMETTT 473
Query: 276 EEVKEAI---QNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRID---SISK 329
EEV + +F+ I + +E ++ +S+ + + A + +V+ ID +S+
Sbjct: 474 EEVVSGMGLADTAGESFEHINQTVSEVTRQIQNVSDSVQKVATGTRQMVETIDIVNDVSE 533
Query: 330 DVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMG 371
+ +N T+ ++E++ + K+ E + ++G
Sbjct: 534 SSAKGMNEVAASTEEQMATMEEVAAASATLAKMAEELQELIG 575
>pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synechocystis sp.
(strain PCC 6803) >gi|1652103|dbj|BAA17028.1| (D90902)
methyl-accepting chemotaxis protein [Synechocystis sp.]
Length = 869
Score = 141 bits (351), Expect = 1e-32
Identities = 90/284 (31%), Positives = 163/284 (56%), Gaps = 13/284 (4%)
Query: 82 IENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENV-----KIAEVNDYIQTLSAGIE 136
I+NL+E++ L+ K ++ + + +E +R N+ + ++A + +Q ++ IE
Sbjct: 581 IQNLREIV--LQVKNAAKQVNNNCKDSESFARNNSSDALRMAEELAVTLNSVQLMTESIE 638
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
+ A++ + A S+ A KG + + + +I ET E + V+ LAE S++I+
Sbjct: 639 RVAENAREAEEVAHTSSLTALKGGEAVERTVGGILQIRETVSETARKVKRLAEASQEISK 698
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
IV VIS IAS+TNLLALNASI+AARAGEAGRGFA+VA+ VR+LADRS KS +EI ++ +
Sbjct: 699 IVAVISQIASRTNLLALNASIQAARAGEAGRGFAIVADEVRQLADRSAKSLKEIEQIVLQ 758
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKEL-SEGIDEQAN 315
+Q V+ A++E ++ +V + + A +DI +N +V+ + ++ + +Q N
Sbjct: 759 IQSETGSVMTAMEEGIQQVIDVTDKSEQSKRALEDIIEVSNRINTLVRSITADTVKQQEN 818
Query: 316 SVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEI 359
S + ++ + + +Q + ++GSL+ L + ++
Sbjct: 819 S-----GAVSNVMQSIELTAQETSQESQRVAGSLQTLVSISRDL 857
>pir||H83324 probable chemotaxis transducer PA2573 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948634|gb|AAG05961.1|AE004685_7 (AE004685) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 535
Score = 141 bits (351), Expect = 1e-32
Identities = 105/317 (33%), Positives = 172/317 (54%), Gaps = 31/317 (9%)
Query: 48 QIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEV 107
Q P+G+ DE A +L+R G + ENL+++I + ++ E L +
Sbjct: 228 QEPIGVDSNDE------AGQLQRALG------EMQENLRQMITIIRQESEE-----LHDT 270
Query: 108 NELVSRLNNENVKIAEVN-DYIQTLSAGIEEMNVQAQQLSDFA-------LESASMAEKG 159
++ + + + V A D +++A +EEM Q+SD A +S +A G
Sbjct: 271 SQSIGQTSQSIVHGASQQADSATSMAASMEEMITNISQISDHADNARVISAKSEELASSG 330
Query: 160 RQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEA 219
Q+ NV +SRI++ + S ++ L + S +I+ I+ VI IA QTNLLALNA+IEA
Sbjct: 331 GQVILNVVEGMSRIADVVNQSSTSITALGQSSDEIHSIIQVIKGIAEQTNLLALNAAIEA 390
Query: 220 ARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENV-RVTEEV 278
ARAGEAGRGFAVVA+ VR LA R+ +S +EI +IE ++ + + I +++ V RV E V
Sbjct: 391 ARAGEAGRGFAVVADEVRGLAARTTQSTQEITAMIERIRASTGQAINSMEAGVSRVNEGV 450
Query: 279 KEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFA 338
A Q + + ++I A++V E+S+ I EQ+ + + R++ I++ N
Sbjct: 451 SFARQAGV-SINEILDGTRHAASVVDEISQTIREQSRASDEIAQRVELIAQRSQQN---- 505
Query: 339 TQLTDTISGSLEKLNEV 355
TQ ++ + +LNEV
Sbjct: 506 TQAMHEMAATARRLNEV 522
>gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium sp. NRC-1]
Length = 536
Score = 140 bits (349), Expect = 3e-32
Identities = 86/285 (30%), Positives = 152/285 (53%), Gaps = 15/285 (5%)
Query: 89 IENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDF 148
IE E++ E V E+ + + E+ ++A+ D +Q+LS +EE+ A Q++D
Sbjct: 229 IEAASEQVAE-------SVQEISAGTDREHTRLADATDELQSLSGAVEEVAASASQVADV 281
Query: 149 ALESASMAEKGRQISDNVALKVSRI----SETSREMSDAVRILAEYSKKINDIVYVISSI 204
S A++GRQ SD+ A V+++ SET +S+A + AE +++I +V +I+ I
Sbjct: 282 ---SDQAADRGRQGSDDAAAAVTQMTDIQSETEAVVSEANALAAE-AQEIRRVVDLINDI 337
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV 264
QT+LLALNASIEAARA + G GFAVVA V+ELA+ + ++ +EI L++ + + V
Sbjct: 338 TDQTHLLALNASIEAARADQDGDGFAVVAAEVKELAEETNEATDEIETLVDNLLSSTQSV 397
Query: 265 IQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRI 324
+ ++ E ++N + A ++I + V+++ + D QA S V I
Sbjct: 398 VDDSEQMAATVSSGTETVENALTALEEIGDHVTDVNEAVQQIDDATDAQAASADTTVSMI 457
Query: 325 DSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRI 369
+ I N + A ++ L++V + +T+L + D +
Sbjct: 458 EEIEDISEQNSSEAASVSAAAQQQTASLSDVTDGVTRLVDRADTL 502
>dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 433
Score = 139 bits (346), Expect = 6e-32
Identities = 94/377 (24%), Positives = 187/377 (48%), Gaps = 14/377 (3%)
Query: 3 NSILSLISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLK 62
N IL ++ ++ F E S+ ++ I+ DV K L E+L
Sbjct: 64 NGILGYVA-SSFFIAKPLSALERSARKAAEGDIH--NDVAVSKSDDEIRSLGLAYNEMLA 120
Query: 63 KVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIA 122
+ + + K++ + + ++ ++ + + E+++ + A
Sbjct: 121 SLRSMVNEINANFVETDAKVKEMNIAAQQSSDRAEQIAV-TMSEISKGAENSAESVQQTA 179
Query: 123 EVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSD 182
E D + ++ ++E +++Q S+ E + R++ D++ L + +++E + + D
Sbjct: 180 EAMDQVNQIAEQVQERMEKSRQSSN---EMVKTLAESRKVIDSLVLGIKQLAEDNEKSLD 236
Query: 183 AVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADR 242
+V L E +K++++I+ ++ IA QTNLLALNASIEAARAGE G+GFAVVA+ VR+LAD
Sbjct: 237 SVGRLEEQAKEVDEIISLVGDIAEQTNLLALNASIEAARAGEHGKGFAVVADEVRKLADE 296
Query: 243 SKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANM 302
S K+ + I NL+ +QE + V+ I V + E A ++ E AN+
Sbjct: 297 SGKAVQGISNLVRNIQEEVKHVVTQIGTQVEKAKTESEKGTATNRAIQEVETSVREVANV 356
Query: 303 VKELSEGIDEQANSVQ---MLVDRIDSISKDVSDNLNFATQLTDTISGSLEKL----NEV 355
++E+SE + Q +++ + +I+++ S +TD + +++++ N +
Sbjct: 357 IEEISEMMKTQTKAIRETAKQTQEVAAIAEETSAGAQQVAAVTDQQTNAVQEMSTTANIL 416
Query: 356 KEEITKLKENIDRIMGE 372
++ KLK+ I++ M E
Sbjct: 417 SKQAKKLKQTIEKFMIE 433
>pir||T44938 transducer protein htpV [similarity] - Halobacterium salinarum
>gi|1621047|gb|AAB17519.1| (U53365) transducer HtI
protein [Halobacterium salinarum]
Length = 544
Score = 139 bits (346), Expect = 6e-32
Identities = 84/260 (32%), Positives = 147/260 (56%), Gaps = 14/260 (5%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V E+ + +++ ++ V + + + SA +EE+ AQ ++D A ++ +A G+Q +++
Sbjct: 250 VQEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTAADTTDVATAGKQTAEDA 309
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
+ + ET + V L + + +I+DI +IS IA QTN+LALNA+IEAARAG G
Sbjct: 310 IDAIDAVQETMQTTVANVDALEDLTTEIDDIAELISDIAEQTNMLALNANIEAARAGSGG 369
Query: 227 R----GFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAI 282
GFAVVA+ V+ELA S++SA++I LIEE+Q ++ I+ + + A+
Sbjct: 370 GTNGDGFAVVADEVKELATESQRSAKDIAELIEEVQSQTATTVEEIRVAEQRVNDGAAAV 429
Query: 283 QNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSI------SKDVSDNLN 336
+ + AF + ET + V+E+S+ +DEQA + +V +D I + D ++N++
Sbjct: 430 EETVDAFGAVTENIQETTDGVQEISQAMDEQAQRSERVVSSVDDIATISQATADRAENVS 489
Query: 337 FA----TQLTDTISGSLEKL 352
A T ++GSL+ L
Sbjct: 490 AASEEQTASITEVTGSLQSL 509
>sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|11277601|pir||T46811
halobacterial transducer protein V [imported] -
Halobacterium salinarum >gi|1435132|emb|CAA64842.1|
(X95589) halobacterial transducer protein V
[Halobacterium salinarum] >gi|10581214|gb|AAG19985.1|
(AE005080) Htr7 transducer; Htr7 [Halobacterium sp.
NRC-1]
Length = 545
Score = 138 bits (345), Expect = 7e-32
Identities = 81/267 (30%), Positives = 143/267 (53%), Gaps = 4/267 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V E+ + +++ ++ V + + + SA +EE+ AQ ++D A ++ +A G+Q +++
Sbjct: 251 VQEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTAADTTDVATAGKQTAEDA 310
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEA- 225
+ + ET + V L + + +I+DI +IS IA QTN+LALNA+IEAARAG
Sbjct: 311 IDAIDAVQETMQTTVANVDALEDLTTEIDDIAELISDIAEQTNMLALNANIEAARAGSGG 370
Query: 226 ---GRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAI 282
G GFAVVA+ V+ELA S++SA++I LIEE+Q ++ I+ + + A+
Sbjct: 371 GSNGDGFAVVADEVKELATESQRSAKDIAELIEEVQSQTATTVEEIRVAEQRVNDGAAAV 430
Query: 283 QNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLT 342
+ + AF + ET + V+E+S+ +DEQA + +V +D I+ + A ++
Sbjct: 431 EETVDAFGAVTENIQETTDGVQEISQAMDEQAQRSERVVSSVDDIATISQATADRAENVS 490
Query: 343 DTISGSLEKLNEVKEEITKLKENIDRI 369
+ EV + L D +
Sbjct: 491 AASEEQTASITEVTSSLQSLAAQADTL 517
>pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-accepting
phototaxis protein ii) (mpp-ii) PAB2066 - Pyrococcus
abyssi (strain Orsay) >gi|5457855|emb|CAB49345.1|
(AJ248284) SENSORY RHODOPSIN II TRANSDUCER (HTR-II)
(METHYL-ACCEPTING PHOTOTAXIS PROTEIN II) (MPP-II)
[Pyrococcus abyssi]
Length = 501
Score = 138 bits (343), Expect = 1e-31
Identities = 83/316 (26%), Positives = 165/316 (51%), Gaps = 32/316 (10%)
Query: 82 IENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQ 141
+ ++++ I NL E + V+ DL E SR N+ +E+++ I ++ I++++V+
Sbjct: 179 LNSMRKTISNLRELMKTVR--DLALTLE--SRANDLTRISSEISEAINQVAEAIQQVSVE 234
Query: 142 AQ----------------------------QLSDFALESASMAEKGRQISDNVALKVSRI 173
AQ + S E S+A +G+ + +V I
Sbjct: 235 AQRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDI 294
Query: 174 SETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVA 233
+ + + AV+ +AE SK + DI+ I+ IA QTNLLALNA+IEAARAGE GRGFAVVA
Sbjct: 295 QDAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVA 354
Query: 234 ENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIA 293
+ VR LA+ SK++AE+IR ++ E+QE + + ++ ++ V+V ++ + ++ + +I
Sbjct: 355 QEVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIG 414
Query: 294 RRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLN 353
++ + ++++ + V+ +++++ + A +++ + +
Sbjct: 415 ELLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSME 474
Query: 354 EVKEEITKLKENIDRI 369
EVK I +L++ + ++
Sbjct: 475 EVKRNIIELRDIVKKL 490
>pir||T44964 transducer protein car [validated] - Halobacterium salinarum
(strain Flx15) >gi|2072795|gb|AAC45264.1| (U74668)
soluble transducer protein HtH [Halobacterium salinarum]
Length = 451
Score = 137 bits (341), Expect = 2e-31
Identities = 83/306 (27%), Positives = 166/306 (54%), Gaps = 22/306 (7%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGD-LGEVNELVSRLNN-----------ENVKIAEV 124
++ +K++N +E + +L E + + +G+ L E++E + ++ + E ++
Sbjct: 155 DISEKVKNQRE-LHDLHETVS-INVGEHLSELSESIDKVGSFAEETEPFAGKEIERMEGF 212
Query: 125 NDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAV 184
D + SA IEE+ A+++S + + A +G Q ++ ++ + E++ ++D +
Sbjct: 213 ADKVSNQSATIEEIASSAEEVSQASQRAQDRATEGEQTAETAIDRMGAVQESAERVNDTI 272
Query: 185 RILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSK 244
L + ++++I+ I+ IA QTN+LALNASIEAARAGE G GFAVVA+ V+ LA+ S+
Sbjct: 273 DGLTSQADEMSEIIDAINDIADQTNMLALNASIEAARAGEKGEGFAVVADEVKSLAEESQ 332
Query: 245 KSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVK 304
+ A+EI +I EM E ++ I + EE A++ + + +I +ETA VK
Sbjct: 333 ERADEIEQMIVEMVETTDQTADRIGQTTTEIEEAITAVRETLDSLQEIRNAVDETATGVK 392
Query: 305 ELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKE 364
E++ D A++ Q+ +++ K T+L D + + +E + + ++++
Sbjct: 393 EVAGARDHAASTEQVAATTDEAVDK--------LTELEDRLDNLSQIASEQHDRVAEIED 444
Query: 365 NIDRIM 370
+D ++
Sbjct: 445 MVDELV 450
>pir||F72288 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981694|gb|AAD36222.1|AE001772_1 (AE001772)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 539
Score = 136 bits (340), Expect = 3e-31
Identities = 96/330 (29%), Positives = 168/330 (50%), Gaps = 39/330 (11%)
Query: 74 KKINVKDKIENLKEVIENLEEKIGEVKLG-------------DLGEVNE-LVSRLNNENV 119
+KI KD+I +E L E + ++ G +L +E L + +N+ +
Sbjct: 207 EKIRSKDEIGKAAMAVEKLREILLDIITGINKASSEVSSSSEELSATSEELSANVNSISE 266
Query: 120 KIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESA----SMAEKGRQISDNVALKVSRISE 175
+ +N SA +EE ++LS A ++ +M E +++ + V RI E
Sbjct: 267 ALVSLNKEADENSATLEEFTASIEELSSTADSNSKSAQAMLESTQRVHEQVEKSTERIRE 326
Query: 176 ------TSREMSD----AVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEA 225
++REMS+ A+ L ++ IN IV I+SIA QTNLLALNA+IEAARAGEA
Sbjct: 327 ITEKAHSTREMSENTKQALNRLLSMAENINSIVDTINSIAEQTNLLALNAAIEAARAGEA 386
Query: 226 GRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINR-------VIQAIQENVRVTEEV 278
GRGFAVVA+ +R+LA+ SK + ++I ++ ++++ IN AI+E + E +
Sbjct: 387 GRGFAVVADEIRKLAEESKAATQQIGEILGKLRDEINNSSKIVESTASAIEETASLVESI 446
Query: 279 KEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFA 338
K+ +++ A +D+ R A +E S ++E + V L + ++ +N + A
Sbjct: 447 KDVFESIRIAMEDVQSRVESVAASTQEQSASLEELSAGVTRLTELLNK----TRENTSSA 502
Query: 339 TQLTDTISGSLEKLNEVKEEITKLKENIDR 368
+ +LE+L+ + + +L + + R
Sbjct: 503 NSALQEANAALEELSASAQSLAELAQELQR 532
>pir||C72291 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981690|gb|AAD36219.1|AE001771_12 (AE001771)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 530
Score = 136 bits (340), Expect = 3e-31
Identities = 86/308 (27%), Positives = 172/308 (54%), Gaps = 24/308 (7%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
N+KD V E++EE I + ++ + ++N + +I ++ +Q +AG E
Sbjct: 223 NLKDVQTETFSVAESIEE-ISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSE 281
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMS----DAVRILAEYSK 192
E++ + ++D A ++AS A++ Q++ + ++ E +R +S D R++ + K
Sbjct: 282 EISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQK 341
Query: 193 ---KINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEE 249
+I V I++IA QTNLLALNA+IEAARAGEAGRGFAVVA+ +R+LA+ S++++E
Sbjct: 342 GAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASEN 401
Query: 250 IRNLIEEMQENINRVIQAIQENV-RVTEEVKEAIQNLIAAFDDIARRANETANMVKELSE 308
+R ++ E I++I E+ +V+ E+ ++ D+ + N V+ ++E
Sbjct: 402 VRRVVNE--------IRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINE 453
Query: 309 GIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDT---ISGSLEKLNEVKEEITK---- 361
+ A +++ +D I+ +++N A ++T++ ++ L++++ EE+T
Sbjct: 454 MLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQT 513
Query: 362 LKENIDRI 369
++EN+ +
Sbjct: 514 IRENVQML 521
>pir||F71197 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3258290|dbj|BAA30973.1| (AP000007) 507aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 507
Score = 136 bits (338), Expect = 5e-31
Identities = 72/295 (24%), Positives = 159/295 (53%), Gaps = 6/295 (2%)
Query: 76 INVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGI 135
+ ++ + ++L + + E + +V + ++ + + I ++ D + L+A +
Sbjct: 204 VTLETRADDLARISSEITEAVNQVAEA----IQQVSTEAQRQQENITQIMDGMN-LTADV 258
Query: 136 EEMNVQA-QQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKI 194
+ V+A ++ S E S+A +G++ + +V I R +S AV+ +AE SK +
Sbjct: 259 TQRTVEAMEEFSSVVNEVISIAREGKEKGEKAISQVGDIQNAMRVISQAVQEVAEMSKNV 318
Query: 195 NDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLI 254
+I+ I+ IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA+ SK++AE IR ++
Sbjct: 319 GEIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAERIREIL 378
Query: 255 EEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQA 314
++Q+ + + ++ ++ V++ + + ++ + ++ ++ + ++ + +
Sbjct: 379 NQIQDKVEKAVEETEKGVKIVDNSVDFLRETVGYLMNVGELLDDVEDKLQAVKSELANTQ 438
Query: 315 NSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRI 369
V+ +++++ + A +++ + L EV+ I +L++ + ++
Sbjct: 439 EHVENAKKALENLAASAEETTASAEEVSASAEEQASSLEEVRRNIVELRDIVKKL 493
>dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 667
Score = 136 bits (338), Expect = 5e-31
Identities = 97/313 (30%), Positives = 174/313 (54%), Gaps = 27/313 (8%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGD--LGEVNELVSRLNNE-NVKIAEVNDYIQTLSA 133
NV NLKEVI + + V L +E VSR + + + I +V + S+
Sbjct: 349 NVNQMATNLKEVIHQVGDSADRVAASSQQLSASSEEVSRSSEQISESIQQVASGSEKQSS 408
Query: 134 GI-------EEMNVQAQQLSDFAL---ESA-SMAEKGRQISDNVALKVSRISETSREMSD 182
G+ EE++ QQ+++ ++ ESA S EK ++ +V V +++ ++D
Sbjct: 409 GVNESTLSLEEVSSSVQQIAEASVQITESANSTIEKAKEGGQSVENNVETMNKIHESVTD 468
Query: 183 AVRI---LAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVREL 239
+V+I LAE SK+IN+I+ VI+SIA QTNLLALNA+IEAARAGE G+GFAVVA+ VR+L
Sbjct: 469 SVQITKMLAERSKEINNILDVITSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKL 528
Query: 240 ADRSKKSAEEIRNLIEEMQENINR-------VIQAIQENVRVTEEVKEAIQNLIAAFDDI 292
A+ S+ S+++I ++ E+Q+ ++R V++ +++ + V E K Q +I + + +
Sbjct: 529 AESSQHSSQQISEIVVEIQKEMDRTSTAMNGVMEEVKDGLTVANETKTHFQEIIQSTNQV 588
Query: 293 ARRANETANMVKELS---EGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSL 349
A + A +E+S E + N + ++ + ++DV+ + ++ S
Sbjct: 589 AEQIESMAATSEEISAEVEQVSASFNEIAVIAENTSDSAQDVAAASEEQLATMEEVTSSA 648
Query: 350 EKLNEVKEEITKL 362
+ L+++ ++ +L
Sbjct: 649 QYLSQMATDLREL 661
>pir||T44978 transducer protein hemAT [validated] - Halobacterium salinarum
>gi|1654421|gb|AAB17881.1| (U75436) transducer HtB
protein [Halobacterium salinarum]
Length = 489
Score = 135 bits (337), Expect = 6e-31
Identities = 76/252 (30%), Positives = 139/252 (55%), Gaps = 2/252 (0%)
Query: 112 SRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVS 171
+R +++ ++A+V+ I ++SA +EE+ A + + ++ ++A++G +D+ ++
Sbjct: 238 ARTDDQVDRMADVSREISSVSASVEEVASTADDVRRTSEDAEALAQQGEAAADDALATMT 297
Query: 172 RISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAV 231
I E + ++ V L E + + + VI IA QTN+LALNASIEAARAGEAG GFAV
Sbjct: 298 DIDEATDGVTAGVEQLGERAADVESVTGVIDDIAEQTNMLALNASIEAARAGEAGEGFAV 357
Query: 232 VAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQE-NVRVTEEVKEAIQNLIAAFD 290
VA+ V+ LA+ S++ + + L+E+MQ + + E N R+ E V E ++ +
Sbjct: 358 VADEVKALAEESREQSTRVEELVEQMQAETEETVDQLDEVNQRIGEGV-ERVEEAMETLQ 416
Query: 291 DIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLE 350
+I + A+ ++E+S DEQA S + + + +D + + + D +
Sbjct: 417 EITDAVEDAASGMQEVSTATDEQAVSTEEVAEMVDGVDDRAGEIAAALDDIADATDQQVR 476
Query: 351 KLNEVKEEITKL 362
+ EV+E + KL
Sbjct: 477 TVEEVRETVGKL 488
>gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium sp. NRC-1]
Length = 489
Score = 135 bits (336), Expect = 8e-31
Identities = 78/262 (29%), Positives = 142/262 (53%), Gaps = 3/262 (1%)
Query: 103 DLGEVNELVSRLNNENV-KIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQ 161
D+ E + + ++ V ++A+V+ I ++SA +EE+ A + + ++ ++A++G
Sbjct: 228 DVAERTDTMRAATDDQVDRMADVSREISSVSASVEEVASTADDVRRTSEDAEALAQQGEA 287
Query: 162 ISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAAR 221
+D+ ++ I E + ++ V L E + + + VI IA QTN+LALNASIEAAR
Sbjct: 288 AADDALATMTDIDEATDGVTAGVEQLRERAADVESVTGVIDDIAEQTNMLALNASIEAAR 347
Query: 222 AGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQE-NVRVTEEVKE 280
AGEAG GFAVVA+ V+ LA+ S++ + + L+E+MQ + + E N R+ E V E
Sbjct: 348 AGEAGEGFAVVADEVKALAEESREQSTRVEELVEQMQAETEETVDQLDEVNQRIGEGV-E 406
Query: 281 AIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQ 340
++ + +I + A+ ++E+S DEQA S + + + +D + +
Sbjct: 407 RVEEAMETLQEITDAVEDAASGMQEVSTATDEQAVSTEEVAEMVDDVDDRAGEIAAALDD 466
Query: 341 LTDTISGSLEKLNEVKEEITKL 362
+ D + + EV+E + KL
Sbjct: 467 IADATDQQVRTVEEVRETVGKL 488
>dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [Bacillus halodurans]
Length = 667
Score = 134 bits (335), Expect = 1e-30
Identities = 97/313 (30%), Positives = 173/313 (54%), Gaps = 27/313 (8%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGD--LGEVNELVSRLNNE-NVKIAEVNDYIQTLSA 133
NV NLKEVI + + V L +E VSR + + + I +V + S+
Sbjct: 349 NVNQMATNLKEVIHQVGDSADRVAASSQQLSASSEEVSRSSEQISESIQQVASGSEKQSS 408
Query: 134 GI-------EEMNVQAQQLSDFAL---ESA-SMAEKGRQISDNVALKVSRISETSREMSD 182
G+ EE++ QQ+++ ++ ESA S EK ++ +V V +++ ++D
Sbjct: 409 GVNESTLSLEEVSSSVQQIAEASVQITESANSTIEKAKEGGQSVENNVETMNKIHESVTD 468
Query: 183 AVRI---LAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVREL 239
+V+I LAE SK+IN+I+ VI+SIA QTNLLALNA+IEAARAGE G+GFAVVA+ VR+L
Sbjct: 469 SVQITKMLAERSKEINNILDVITSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKL 528
Query: 240 ADRSKKSAEEIRNLIEEMQENINR-------VIQAIQENVRVTEEVKEAIQNLIAAFDDI 292
A+ S+ S+++I ++ E+Q+ ++R V++ +++ + V E K Q +I + + +
Sbjct: 529 AESSQHSSQQISEIVVEIQKEMDRTSTAMNGVMEEVKDGLTVANETKTHFQEIIQSTNQV 588
Query: 293 ARRANETANMVKELS---EGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSL 349
A + A +E+S E + N + + + ++DV+ + ++ S
Sbjct: 589 AEQIESMAATSEEISAEVEQVSASFNEIAVTAENTSDSAQDVAAASEEQLATMEEVTSSA 648
Query: 350 EKLNEVKEEITKL 362
+ L+++ ++ +L
Sbjct: 649 QYLSQMATDLREL 661
>gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium salinarum]
Length = 792
Score = 132 bits (330), Expect = 4e-30
Identities = 80/263 (30%), Positives = 143/263 (53%), Gaps = 3/263 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V ++ + + ++ V D + LSA +E++ + ++A+ +E+G+++ ++
Sbjct: 511 VQDISADAEEQRDRLGTVGDEVHALSATVEDIAARPTTSPSTVNQAATESERGQELGEDA 570
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ RI T+ + V L E I + VI+ IA QTN+LALNA+IEAARA ++G
Sbjct: 571 VAELERIEATADSAVERVTALEEAVDAIGHVTGVITDIAEQTNMLALNANIEAARADKSG 630
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LAD K+SA EI L++++Q ++ + + E + E I+ +
Sbjct: 631 DGFAVVADEVKDLADEVKESATEIETLVDDVQADVADTVADMSELGDRVDAGSETIEAAL 690
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
AA DDI + V+ +S+ DEQA S + +V ID ++ D+SD AT+ +
Sbjct: 691 AAVDDIGDQVEAANGSVQSISDATDEQAASTEEVVTMIDEVT-DLSDRT--ATESQQVSA 747
Query: 347 GSLEKLNEVKEEITKLKENIDRI 369
+ E+ V E + + D++
Sbjct: 748 AAEEQAASVSEVAGRADDLDDQV 770
>sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1364151|pir||S55296
sensory rhodopsin II transducer protein - Haloarcula
vallismortis (fragment) >gi|516322|emb|CAA84549.1|
(Z35308) transducer of sensory rhodopsin II [Haloarcula
vallismortis]
Length = 433
Score = 132 bits (328), Expect = 7e-30
Identities = 83/297 (27%), Positives = 157/297 (51%), Gaps = 17/297 (5%)
Query: 76 INVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGI 135
I D++ + E ++ +++ + +NE+ +N + +Q LSA
Sbjct: 121 IQSSDRVNSNAERVDRASKQVSK-------SINEIFEGTTEQNEGLESAAAEMQNLSATA 173
Query: 136 EEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIN 195
+++ AQQ++D + +A + E GR+ + ++S I + E + + L + +I
Sbjct: 174 QQVASSAQQVADTSQSAAKVGEDGREAAQEAIAEMSAIEAETGETVEEINALDDELDEIG 233
Query: 196 DIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIE 255
+IV VI+SI QTN+LALNASIEAA A G GFAVVA+ ++ LA+ +K++A +I IE
Sbjct: 234 EIVGVITSIVEQTNMLALNASIEAAHADGDGEGFAVVADEIKGLAEETKEAAADIEGRIE 293
Query: 256 EMQENINRVIQAIQE-NVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQA 314
+QE ++ ++ + R+TE V ++ + A + I E ++E+ +EQA
Sbjct: 294 AIQEQAGDTVETMESTSTRITEGV-STVEETVDALETIVEYTEEVDTGIQEIDRATEEQA 352
Query: 315 NSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLE----KLNEVKEEITKLKENID 367
+ Q ++ ID ++ + + AT+ DT++G+ + + EV + T+L++ D
Sbjct: 353 RTAQDVMGTIDDLT---TISQQTATE-ADTVAGAAQDQSASIEEVSDSATELRQRAD 405
>gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium sp. NRC-1]
Length = 790
Score = 132 bits (328), Expect = 7e-30
Identities = 87/313 (27%), Positives = 160/313 (50%), Gaps = 14/313 (4%)
Query: 59 EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNEN 118
E L+ R++R D I E ++ ++ E V E+ + +N
Sbjct: 443 EELEGTIHRIQRFSKDVAESSDHITTSAEEVKRASGQVSE-------SVQEMSADARQQN 495
Query: 119 VKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSR 178
+ +V+D + LSA IEE+ + +++ + ++ S+ + GR S + +++ + E ++
Sbjct: 496 GIVQDVSDEMTDLSATIEEIASSSDEVAAKSNDAVSVGQSGRARSQDAIEEMNAVDEQAK 555
Query: 179 EMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRE 238
+ L + +I +IV +I IA QT++LALNASIEAARAGEAG GFAVVA+ ++
Sbjct: 556 RTIAEMEALDDEMTEIGEIVTLIDDIAEQTSMLALNASIEAARAGEAGEGFAVVADEIKS 615
Query: 239 LADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANE 298
L+ + ++ +EI +LI ++Q++ + +QE E K + + + D I R E
Sbjct: 616 LSKETTEATQEIESLIADVQDSTTDAVTDMQEMGDRLSEGKSTVTDTVETIDTIVERIEE 675
Query: 299 TANMVKELSEGIDEQANS---VQMLVDRIDSISKDVS----DNLNFATQLTDTISGSLEK 351
V+ ++ DEQA + V +VD + SIS D + D A + T +++ +
Sbjct: 676 ANGGVQTINTATDEQATTTEEVVTMVDEVGSISDDTTARAEDAAAAAEEQTASLTEVTNR 735
Query: 352 LNEVKEEITKLKE 364
+ ++ ++ T L E
Sbjct: 736 IQDLSDQSTDLYE 748
>pir||T44989 transducer protein trII [imported] - Haloarcula vallismortis
>gi|5921503|emb|CAB56464.1| (AJ249640) trII protein
[Haloarcula vallismortis]
Length = 773
Score = 132 bits (328), Expect = 7e-30
Identities = 83/297 (27%), Positives = 157/297 (51%), Gaps = 17/297 (5%)
Query: 76 INVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGI 135
I D++ + E ++ +++ + +NE+ +N + +Q LSA
Sbjct: 461 IQSSDRVNSNAERVDRASKQVSK-------SINEIFEGTTEQNEGLESAAAEMQNLSATA 513
Query: 136 EEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIN 195
+++ AQQ++D + +A + E GR+ + ++S I + E + + L + +I
Sbjct: 514 QQVASSAQQVADTSQSAAKVGEDGREAAQEAIAEMSAIEAETGETVEEINALDDELDEIG 573
Query: 196 DIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIE 255
+IV VI+SI QTN+LALNASIEAA A G GFAVVA+ ++ LA+ +K++A +I IE
Sbjct: 574 EIVGVITSIVEQTNMLALNASIEAAHADGDGEGFAVVADEIKGLAEETKEAAADIEGRIE 633
Query: 256 EMQENINRVIQAIQE-NVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQA 314
+QE ++ ++ + R+TE V ++ + A + I E ++E+ +EQA
Sbjct: 634 AIQEQAGDTVETMESTSTRITEGV-STVEETVDALETIVEYTEEVDTGIQEIDRATEEQA 692
Query: 315 NSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLE----KLNEVKEEITKLKENID 367
+ Q ++ ID ++ + + AT+ DT++G+ + + EV + T+L++ D
Sbjct: 693 RTAQDVMGTIDDLT---TISQQTATE-ADTVAGAAQDQSASIEEVSDSATELRQRAD 745
>sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >gi|2127141|pir||I40496
methylation enzyme tlpC - Bacillus subtilis
>gi|496484|emb|CAA83970.1| (Z34005) tlpC [Bacillus
subtilis]
Length = 573
Score = 131 bits (327), Expect = 1e-29
Identities = 81/269 (30%), Positives = 147/269 (54%), Gaps = 3/269 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V ++ + ++ +I ++ SA I +++ ++D + S A+ G++ NV
Sbjct: 295 VQQIANGAQDQITRIENSESSLKQASADIRDISANTAAIADKGQLAQSKADIGQKEIANV 354
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ I ++ ++ + + L SK+I I+ VI+ IA QTNLLALNA+IEAARAGE G
Sbjct: 355 QAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILSVITQIADQTNLLALNAAIEAARAGEQG 414
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
+GFAVVA+ VR+LA+ S++SA +I LI E+Q+++NR ++++ E IQ
Sbjct: 415 KGFAVVADEVRKLAEESQQSAGQISKLIIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTR 474
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSD---NLNFATQLTD 343
AF +IA E + + +LS + + S + D + + D+ + N A LT+
Sbjct: 475 DAFKEIAAATGEISAEISDLSASVTNISASAHQINDSFAANTADIKESTKNTRQAAALTE 534
Query: 344 TISGSLEKLNEVKEEITKLKENIDRIMGE 372
++E++ E +++L E + I+ +
Sbjct: 535 EQFAAMEEITAASETLSQLAEELTGIISQ 563
>dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein TlpC [Bacillus
subtilis] >gi|1805416|dbj|BAA08978.1| (D50453)
methyl-accepting chemotaxis protein of B. subtilis
[Bacillus subtilis] >gi|2632630|emb|CAB12138.1| (Z99105)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 573
Score = 131 bits (327), Expect = 1e-29
Identities = 81/269 (30%), Positives = 147/269 (54%), Gaps = 3/269 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V ++ + ++ +I ++ SA I +++ ++D + S A+ G++ NV
Sbjct: 295 VQQIANGAQDQITRIENSESSLKQASADIRDISANTAPIADKGQLAQSKADIGQKEIANV 354
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ I ++ ++ + + L SK+I I+ VI+ IA QTNLLALNA+IEAARAGE G
Sbjct: 355 QAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILSVITQIADQTNLLALNAAIEAARAGEQG 414
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
+GFAVVA+ VR+LA+ S++SA +I LI E+Q+++NR ++++ E IQ
Sbjct: 415 KGFAVVADEVRKLAEESQQSAGQISKLIIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTR 474
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSD---NLNFATQLTD 343
AF +IA E + + +LS + + S + D + + D+ + N A LT+
Sbjct: 475 DAFKEIAAATGEISAEISDLSASVTNISASAHQINDSFAANTADIKESTKNTRQAAALTE 534
Query: 344 TISGSLEKLNEVKEEITKLKENIDRIMGE 372
++E++ E +++L E + I+ +
Sbjct: 535 EQFAAMEEITAASETLSQLAEELTGIISQ 563
>pir||E83067 probable chemotaxis transducer PA4633 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950886|gb|AAG08021.1|AE004877_8 (AE004877) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 712
Score = 131 bits (327), Expect = 1e-29
Identities = 92/348 (26%), Positives = 182/348 (51%), Gaps = 37/348 (10%)
Query: 34 IINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLE 93
++ L D+ G E + LS E + L +A GK N+ + +V+++++
Sbjct: 390 LVGMLDDIAQG-EGDLTRRLSSERADELGSIAKGFNTFLGKLQNM------IGQVVQSVQ 442
Query: 94 EKIGEVKLGDLGEVNELVSRLNNENVK--IAEVNDYIQTLSAGIEEMNVQAQQLSDFALE 151
K+ D E ++ N+ V+ +AE I+ ++ + EM AQ ++ A
Sbjct: 443 ------KVSDSSEHTADIAIRTNQGVQQQLAE----IELVATAVHEMTATAQDVARNATH 492
Query: 152 SASMAE-------KGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSI 204
+A A +G+QI ++ + + ++ V+ LA+ S+ IN I+ I I
Sbjct: 493 AAEAANHADQAAHQGKQIVESSSAAIQALASEIGRAVGVVQNLAKDSENINAILVAIRGI 552
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV 264
A QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA +++++ EEI+++I+++Q+ V
Sbjct: 553 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQQATEEIQSMIQQLQQGTRDV 612
Query: 265 IQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRI 324
++ +Q++ T++ + A + I + + +M +++ +EQ+
Sbjct: 613 VKVMQDSQERTDDSVRHARQAAEALESITQAVSVINDMNTQIASAAEEQS---------- 662
Query: 325 DSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGE 372
++++D++ N+ Q+ + ++G ++ ++ E+T+L E R++ +
Sbjct: 663 -AVAEDINRNVANIGQVANQVAGGADEASQASAELTRLAEQQRRLVNQ 709
>gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium sp. NRC-1]
Length = 643
Score = 131 bits (327), Expect = 1e-29
Identities = 86/316 (27%), Positives = 154/316 (48%), Gaps = 4/316 (1%)
Query: 59 EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNEN 118
E+L + ++ Q +V E+ + +E+ G+V V E+ + + +
Sbjct: 316 EMLDETETTIREIQAVASDVAAASEDADAGVVEIEDASGQVS----ETVQEIAAGADEQR 371
Query: 119 VKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSR 178
K+ V+ + LSA IEE+ A +++ + E+A++A G Q ++ +
Sbjct: 372 EKLETVSGEMTDLSAAIEEVAASADSVAERSHETAAVAGDGEQTAEQAIADSRTVQSAVE 431
Query: 179 EMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRE 238
V L + +I++IV +IS +A QTN+LALNA+IEAARA ++G GFAVVA+ V++
Sbjct: 432 STVQNVEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARADKSGDGFAVVADEVKD 491
Query: 239 LADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANE 298
LA+ ++ SA +I L+ ++ + + + ++ A+ ++ AF +A A E
Sbjct: 492 LAEETRASAGDIEALVADIDAQMQATVTEARTADESVQDAISAVDAVVDAFGTVAENAEE 551
Query: 299 TANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEE 358
T V+E+S D+QA S + V I +S + A Q + + E
Sbjct: 552 TDTGVQEISTTTDDQAASTEEAVSMIAEVSDISTATAADAQQASTAAEQQTTAAATISEN 611
Query: 359 ITKLKENIDRIMGEIS 374
L+E DR+ G +S
Sbjct: 612 TAALREQADRLQGLVS 627
>sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ protein - Pseudomonas
aeruginosa >gi|11352735|pir||C83594 twitching motility
protein PilJ PA0411 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|401797|gb|AAA25952.1| (L22036)
methyl-accepting chemotaxis protein (MCP) homologue
[Pseudomonas aeruginosa]
>gi|9946266|gb|AAG03800.1|AE004478_5 (AE004478)
twitching motility protein PilJ [Pseudomonas aeruginosa]
Length = 682
Score = 130 bits (324), Expect = 2e-29
Identities = 97/356 (27%), Positives = 180/356 (50%), Gaps = 37/356 (10%)
Query: 49 IPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKE--------VIENLEEKIGEVK 100
I L + +E L + A + R Q + + D+I +L + V E+ I +
Sbjct: 327 IGLVMVRETNRRLAETAEKNDRNQAAILRLLDEIADLADGDLTVAATVTEDFTGAIADSI 386
Query: 101 LGDLGEVNELVSRLNNENVKIAEVNDYIQTL------------------SAGIEEMNVQA 142
+ ++ ELV +N V++A Q+ SA I EM V
Sbjct: 387 NYSIDQLRELVETINQTAVQVAAAAQETQSTAMHLAEASEHQAQEIAGASAAINEMAVSI 446
Query: 143 QQLSDFALESASMAE-------KGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIN 195
Q+S A ES+++AE KG ++ N + I E ++ S ++ L E S++I
Sbjct: 447 DQVSANASESSAVAERSVAIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQEIG 506
Query: 196 DIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIE 255
DIV +I+ IA QTN+LALNA+I+A+ AG+AGRGFAVVA+ V+ LA+RS + ++I L++
Sbjct: 507 DIVSLINDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATKQIEALVK 566
Query: 256 EMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQAN 315
+Q + N + ++++ Q+ A ++I + + A +++ +S +QA+
Sbjct: 567 TIQTDTNEAVISMEQTTSEVVRGARLAQDAGVALEEIEKVSKTLAALIQNISNAARQQAS 626
Query: 316 SVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKL-NEVKEEIT--KLKENIDR 368
S + + ++ I ++++ + T T G+L K+ +E++ ++ KL E +++
Sbjct: 627 SAGHISNTMNVI-QEITSQTSAGTTATARSIGNLAKMASEMRNSVSGFKLPEGVEQ 681
>gb|AAG19428.1| (AE005036) Htr13 transducer; Htr13 [Halobacterium sp. NRC-1]
Length = 423
Score = 130 bits (324), Expect = 2e-29
Identities = 89/283 (31%), Positives = 145/283 (50%), Gaps = 19/283 (6%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRL--NNENVKIAEVNDYIQTLSAGI 135
V + IE +E+ +N+EE ++ L ++ N +N+K AE++D +S+ I
Sbjct: 153 VAELIERAREMNQNMEE------------IDRLAAQQSDNTDNLK-AEISD----ISSAI 195
Query: 136 EEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIN 195
E++ A +++D + E+ S+A G + + V +V I + E+ L ++++ I+
Sbjct: 196 EQIAASATEVNDRSDEAQSLATDGYERAVAVVEQVEAIHDGVTEVRHQTATLQDHTEAID 255
Query: 196 DIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIE 255
DIV VI+ IA QTNLLALNASIEAARA G GFAVVA+ V+ LA+ SK AEEI +E
Sbjct: 256 DIVEVINDIADQTNLLALNASIEAARADAGGEGFAVVADEVKSLAEESKTQAEEIEERVE 315
Query: 256 EMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQAN 315
+Q + E TE+ EA + + F++I + + E+ G + Q
Sbjct: 316 NIQVETRNAADTLVELETETEDSLEASTSSLDTFEEIKDLVTGVSTSLDEIKSGTERQTE 375
Query: 316 SVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEE 358
S + L ID ++ + + D L+KL + E
Sbjct: 376 SSEELTMMIDEAARKADTISDEVASMADANHAQLQKLEAYQSE 418
>pir||T44253 transducer protein htrVIII [validated] - Halobacterium salinarum
>gi|3015619|gb|AAC38313.1| (AF031641) methyl-accepting
aerotaxis transducer protein [Halobacterium salinarum]
Length = 642
Score = 129 bits (322), Expect = 4e-29
Identities = 87/316 (27%), Positives = 154/316 (48%), Gaps = 5/316 (1%)
Query: 59 EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNEN 118
E+L + ++ Q +V E+ + +E+ G+V V E+ + + +
Sbjct: 316 EMLDETETTIREIQAVASDVAAASEDADAGVVEIEDASGQVS----ETVQEIAAGADEQR 371
Query: 119 VKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSR 178
K+ V+ + LSA IEE+ A ++D + E+A++A G Q ++ +
Sbjct: 372 EKLETVSGEMTDLSAAIEEVAASAHSVAD-SHETAAVAGDGEQTAEQAIADSRTVQSAVE 430
Query: 179 EMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRE 238
V L + +I++IV +IS +A QTN+LALNA+IEAARA ++G GFAVVA+ V++
Sbjct: 431 STVQNVEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARADKSGDGFAVVADEVKD 490
Query: 239 LADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANE 298
LA+ ++ SA +I L+ ++ + + + ++ A+ ++ AF +A A E
Sbjct: 491 LAEETRASAGDIEALVADIDAQMQATVTEARTADESVQDAISAVDAVVDAFGTVAENAEE 550
Query: 299 TANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEE 358
T V+E+S D+QA S + V I +S + A Q + + E
Sbjct: 551 TDTGVQEISTTTDDQAASTEEAVSMIAEVSDISTATAADAQQASTAAEQQTTAAATISEN 610
Query: 359 ITKLKENIDRIMGEIS 374
L+E DR+ G +S
Sbjct: 611 TAALREQADRLQGLVS 626
>dbj|BAA23412.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 629
Score = 129 bits (321), Expect = 5e-29
Identities = 86/291 (29%), Positives = 151/291 (51%), Gaps = 17/291 (5%)
Query: 87 EVIENLEEKIGEVK--LGDLGEVNELVSRLNNENVKIA-EVNDYIQTLSAGIEEMNVQAQ 143
+ +E + I EV L +V++LV +N ++ + E ++ +++A I E+ AQ
Sbjct: 342 QFVERIHRSIREVAGTAHKLHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQ 401
Query: 144 QL-------SDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
++ S A ++ AE G+Q+ + ++ +SE + L + I
Sbjct: 402 EIARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQ 461
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
I+ VI I+ QTNLLALNA+IEAARAGEAGRGFAVVA+ VR LA R+++SA++I+ +IEE
Sbjct: 462 ILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEE 521
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANS 316
+Q + + E+ R + E E + + RR E M + L+ +EQ
Sbjct: 522 LQVGAREAVATMTESQRYSLESVEIANRAGESLSSVTRRIGEIDGMNQVLATATEEQTAV 581
Query: 317 VQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
V DS++ D+++ + + + +L E++ + +L++ +D
Sbjct: 582 V-------DSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLVD 625
>pir||B83107 chemotactic transducer PctA PA4309 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|1255679|dbj|BAA09307.1|
(D50642) transducer [Pseudomonas aeruginosa]
>gi|9950532|gb|AAG07697.1|AE004847_4 (AE004847)
chemotactic transducer PctA [Pseudomonas aeruginosa]
Length = 629
Score = 129 bits (320), Expect = 6e-29
Identities = 85/291 (29%), Positives = 151/291 (51%), Gaps = 17/291 (5%)
Query: 87 EVIENLEEKIGEVK--LGDLGEVNELVSRLNNENVKIA-EVNDYIQTLSAGIEEMNVQAQ 143
+ +E + I EV L +V++LV +N ++ + E ++ +++A I E+ AQ
Sbjct: 342 QFVERIHRSIREVAGTAHKLHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQ 401
Query: 144 QL-------SDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
++ S A ++ AE G+Q+ + ++ +SE + L + I
Sbjct: 402 EIARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQ 461
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
I+ VI I+ QTNLLALNA+IEAARAGEAGRGFAVVA+ VR LA R+++SA++I+ +IEE
Sbjct: 462 ILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEE 521
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANS 316
+Q + + E+ R + E E + + RR E M + ++ +EQ
Sbjct: 522 LQVGAREAVATMTESQRYSLESVEIANRAGESLSSVTRRIGEIDGMNQSVATATEEQTAV 581
Query: 317 VQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
V DS++ D+++ + + + +L E++ + +L++ +D
Sbjct: 582 V-------DSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLVD 625
>pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus subtilis
Length = 662
Score = 129 bits (320), Expect = 6e-29
Identities = 83/300 (27%), Positives = 159/300 (52%), Gaps = 16/300 (5%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENV----KIAEVNDYIQTLSA 133
++D + N+ E L G+ + + + +N N K+ + + ++
Sbjct: 358 IQDSVNNVAASSEQLTASAGQTSKAT-EHITMAIEQFSNGNEEQSRKVESSSHQLNLMNE 416
Query: 134 GIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKK 193
G+++++ + ++ +++S +A G + +++ I+++ ++ V+ L SK
Sbjct: 417 GLQQVSQTSSDITKASIQSTEIAGTGEKFVQQTVGQMNSINQSVQQAEAVVKGLEGKSKD 476
Query: 194 INDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNL 253
I I+ VI+ IA QTNLLALNA+IEAARAGE+GRGF+VVAE VR+LA +S SA+EI L
Sbjct: 477 ITSILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKL 536
Query: 254 IEEMQENIN-------RVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKEL 306
I+E+ I+ V Q +Q + VT+ KE+ Q++ + ++IA + + V++L
Sbjct: 537 IQEIVAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQL 596
Query: 307 SEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENI 366
S +++ V V I +SK+ S ++ + S+E+++ + ++ E +
Sbjct: 597 S----DRSQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEEL 652
>pir||T44276 transducer protein htrXII [similarity] - Halobacterium salinarum
>gi|4104487|gb|AAD02053.1| (AF036232) soluble transducer
HtrXII [Halobacterium salinarum]
Length = 419
Score = 129 bits (320), Expect = 6e-29
Identities = 87/298 (29%), Positives = 156/298 (52%), Gaps = 15/298 (5%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIA-----EVNDY---I 128
+V ++ E +K L + + E + +L +V E V+ + E +A +VND +
Sbjct: 119 DVVEQRERVKRAQRTLTDDV-EAAVTELRDVGEGVADASQEISDLAAEQASDVNDIAADV 177
Query: 129 QTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILA 188
LSA I+E+ A ++ + E+ AE R+ ++ V V ++ +S L
Sbjct: 178 SDLSATIQEVAASADEVRQRSTEARERAEASREAAERVLAAVEAFADAGDTVSVNTASLR 237
Query: 189 EYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAE 248
E+ +I+ +V VI+ IA QTN+LALNA+IEAARAGE G GF+VVAE V++LA++S++
Sbjct: 238 EHLDEIDQLVDVINDIADQTNMLALNANIEAARAGEDGSGFSVVAEEVKDLAEQSQQQVG 297
Query: 249 EIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSE 308
+I L+ +++ + +++ + A + L+ D IA ETA + E++
Sbjct: 298 DIEALVADIEADSEETAKSVAAANDQVSSARTAAEELVENQDAIASAIGETAEGIAEIAA 357
Query: 309 GIDEQANS------VQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEIT 360
DEQA + V +V+R D+++ + +D Q TD +S + + + + +T
Sbjct: 358 ATDEQAETAAEICRVDTVVERADAVADETADVAAANEQQTDMLSDIEQSVRDAERVLT 415
>sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >gi|1075830|pir||C54078
methyl-accepting chemotaxis protein tlpA - Bacillus
subtilis >gi|459689|gb|AAA20555.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635609|emb|CAB15103.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635621|emb|CAB15114.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 128 bits (319), Expect = 8e-29
Identities = 88/300 (29%), Positives = 157/300 (52%), Gaps = 16/300 (5%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNN----ENVKIAEVNDYIQTLSA 133
+KD +E++ E L + + + + +N ++ KI + I ++
Sbjct: 357 IKDSVEHVASSSEELTASADQTSRAT-EHITMAIEQFSNGSESQSEKIETTTEQINEMND 415
Query: 134 GIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKK 193
G+ E+ A +++ + +S ++ KG + A +++ I + + V+ L SK
Sbjct: 416 GLAELARAAAVITETSADSTEVSSKGETLVQKTAGQMNTIDHSVKAAEQVVKGLEIKSKD 475
Query: 194 INDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNL 253
I +I+ VI+ IA QTNLLALNA+IEAARAGE GRGF+VVAE VR+LA +S SA+EI +L
Sbjct: 476 ITNILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIESL 535
Query: 254 IEEMQENIN---RVIQAIQENVR----VTEEVKEAIQNLIAAFDDIARRANETANMVKEL 306
I E+ + I+ V+Q++ + V +T+E K++ +++ + IA V+EL
Sbjct: 536 ISEIVKEIHTSLNVLQSVNKEVETGLVMTDETKQSFKHISQMTNQIASELQNMNATVEEL 595
Query: 307 SEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENI 366
S G A + + I +ISK+ SD + + S+E+++ + ++ E +
Sbjct: 596 SAG----AQEISAASNDITAISKESSDGIQDIAASAEEQLASMEEISSSALTLERMSEEL 651
>gb|AAG19751.1| (AE005061) Htr12 transducer; Htr12 [Halobacterium sp. NRC-1]
Length = 420
Score = 128 bits (318), Expect = 1e-28
Identities = 86/299 (28%), Positives = 156/299 (51%), Gaps = 16/299 (5%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIA-----EVNDY---I 128
+V ++ E +K L + + E + +L +V E V+ + E +A +VND +
Sbjct: 119 DVVEQRERVKRAQRTLTDDV-EAAVTELRDVGEGVADASQEISDLAAEQASDVNDIAADV 177
Query: 129 QTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILA 188
LSA I+E+ A ++ + E+ AE R+ ++ V V ++ +S L
Sbjct: 178 SDLSATIQEVAASADEVRQRSTEARERAEASREAAERVLAAVEAFADAGDTVSVNTASLR 237
Query: 189 EYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAE 248
E+ +I+ +V VI+ IA QTN+LALNA+IEAARAGE G GF+VVAE V++LA++S++
Sbjct: 238 EHLDEIDQLVDVINDIADQTNMLALNANIEAARAGEDGSGFSVVAEEVKDLAEQSQQQVG 297
Query: 249 EIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSE 308
+I L+ +++ + +++ + A + L+ D IA ETA + E++
Sbjct: 298 DIEALVADIEADSEETAKSVAAANDQVSSARTAAEELVENQDAIASAIGETAEGIAEIAA 357
Query: 309 GIDEQAN-------SVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEIT 360
DEQA ++ +V+R D+++ + +D Q TD +S + + + + +T
Sbjct: 358 ATDEQAETAAEISAAIDTVVERADAVADETADVAAANEQQTDMLSDIEQSVRDAERVLT 416
>pir||D82077 methyl-accepting chemotaxis protein VC2439 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657014|gb|AAF95581.1| (AE004313) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 433
Score = 127 bits (317), Expect = 1e-28
Identities = 85/319 (26%), Positives = 167/319 (51%), Gaps = 15/319 (4%)
Query: 59 EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNEN 118
+V+K +A R + K++ KD+ ++ +E ++ ++ + EL S
Sbjct: 115 DVIKLMAQR-NLSEPIKMDCKDEYGDVARELEKTRRQLQDLIKLQIDASQELTSLTEVMT 173
Query: 119 VKIAEVNDYIQT-------LSAGIEEMNVQAQQLSDFALESASMAEKGRQISDN----VA 167
+ ++E D Q L+ + EM+ Q +++ A ++S+ E Q + V
Sbjct: 174 MSMSETKDSAQEEFNEIDQLATAMSEMSSTVQTVAEHAQNASSLTENASQQAQTGQQFVK 233
Query: 168 LKVSRISETSREMSDAVRILAEYSKK---INDIVYVISSIASQTNLLALNASIEAARAGE 224
+S++SE S+++S + + + + ++ I+ +V I SI+ QTNLLALNA+IEAARAGE
Sbjct: 234 STISKMSELSKDISSSAQAVNQVEERVVAISSVVGTIRSISEQTNLLALNAAIEAARAGE 293
Query: 225 AGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQN 284
AGRGFAVVA+ VR LA R++ + EI+ +I ++Q + N + ++++V + E I N
Sbjct: 294 AGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQSSANSAVNLMEKSVVQAADGVELITN 353
Query: 285 LIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDT 344
+ D I + +M +++ +Q+N + + + ++++ + V ++ T+L +T
Sbjct: 354 AGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVRELVEGSVTVMTELLET 413
Query: 345 ISGSLEKLNEVKEEITKLK 363
E+ +IT +
Sbjct: 414 SEIMQSNAEELDRKITAFR 432
>pir||D83297 probable chemotaxis transducer PA2788 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948870|gb|AAG06176.1|AE004706_6 (AE004706) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 531
Score = 127 bits (317), Expect = 1e-28
Identities = 91/298 (30%), Positives = 162/298 (53%), Gaps = 22/298 (7%)
Query: 73 GKKINVK-DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTL 131
G NVK E K+V E LE+ +G GD ++ ++ + +V + +
Sbjct: 251 GLLANVKRSAAETDKDVAEALEQALGA---GD---------QVARQHQDLDQVATAMNEM 298
Query: 132 SAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYS 191
SA + E+ A + ++A++A +GR++ ++ + + ++E + + A+ L +++
Sbjct: 299 SATVAEVARHANHAAHSTRDAAALAHEGRRLVEHASSQTGALAEELEQTALALNTLHQHA 358
Query: 192 KKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIR 251
+ ++ VISSIA QTNLLALNA+IEAARAGEAGRGFAVVA+ VR LA+R+++S +EI+
Sbjct: 359 GSVGQVLTVISSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLANRTQQSTQEIQ 418
Query: 252 NLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGID 311
LIE++Q+ N + A++ + A NL+ A D A+ V+EL +G++
Sbjct: 419 GLIEQLQDGANDAVAAMRGS------ASHAQSNLVEA-DSAAQALGRIVATVEEL-DGLN 470
Query: 312 EQ-ANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDR 368
+Q A + + I +++++ + Q + + L VKE + L+ + R
Sbjct: 471 QQIATAAEEQSQVAQDIDRNITNVSGLSEQAHEGTAAVLSANQRVKEHMAGLRVVLGR 528
>sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H1)
>gi|1075866|pir||B54078 methyl-accepting chemotaxis
transducer mcpA - Bacillus subtilis
>gi|459690|gb|AAA20556.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635608|emb|CAB15102.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635620|emb|CAB15113.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 661
Score = 127 bits (316), Expect = 2e-28
Identities = 84/258 (32%), Positives = 145/258 (55%), Gaps = 13/258 (5%)
Query: 116 NENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISE 175
NEN++ A ++I ++ G+ M ++ ++D +++S +A +G ++ +++ I +
Sbjct: 400 NENIETAA--EHIYQMNDGLTNMAQASEVITDSSVQSTEIASEGGKLVHQTVGQMNVIDK 457
Query: 176 TSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAEN 235
+ +E VR L SK I +I+ VI+ IA QTNLLALNA+IEAARAGE GRGF+VVAE
Sbjct: 458 SVKEAEQVVRGLETKSKDITNILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEE 517
Query: 236 VRELADRSKKSAEEIRNLIEEMQENIN-------RVIQAIQENVRVTEEVKEAIQNLIAA 288
VR+LA +S SA+EI LI E+ + IN V Q +Q + +T++ + + + +
Sbjct: 518 VRKLAVQSADSAKEIEGLIIEIVKEINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEM 577
Query: 289 FDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGS 348
+ IA + V++LS +E V + I SISK+ S ++ + S
Sbjct: 578 TNQIAGELQNMSATVQQLSASSEE----VSGASEHIASISKESSAHIQDIAASAEEQLAS 633
Query: 349 LEKLNEVKEEITKLKENI 366
+E+++ E ++ + E +
Sbjct: 634 MEEISSSAETLSSMAEEL 651
>dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 695
Score = 127 bits (316), Expect = 2e-28
Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 23/296 (7%)
Query: 83 ENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQA 142
E K+ + I E+ G G+ S L + E +
Sbjct: 411 EETKQTSNQIAVTINEIAEGATGQSEHAASILERMKTTVLEAQ---------------KG 455
Query: 143 QQLSDFALESASMAE----KGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
QQ S ALE A+ + KG Q++ + ++ R ++V+ L E S++I IV
Sbjct: 456 QQASIHALELANQSNQSALKGEQVTRTTVEHLQEVNAQVRTSVESVKSLGERSEEIGSIV 515
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
ISSIA QTNLLALNA+IEAARAGE G+GFAVVAE VR+LA +S +SA++I L+ +Q
Sbjct: 516 TDISSIADQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAAQSAESADKITQLVGGIQ 575
Query: 259 ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
++Q I++N+ + E IQ + + +I T ++++ + + N +
Sbjct: 576 GETKEIVQLIEQNLVSVQRQMEYIQEVGRSLREIVHHTEGTKEQSQDMNSVLTQVLNHAE 635
Query: 319 MLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGEIS 374
++ I+ IS + + A + ++ E+ + EEIT N+ + E++
Sbjct: 636 TVLSSIEEISSIIEQSAASA----EEVAAGAEEQSATVEEITNSSTNLAHMAEELN 687
>gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium sp. NRC-1]
Length = 481
Score = 127 bits (316), Expect = 2e-28
Identities = 81/285 (28%), Positives = 157/285 (54%), Gaps = 16/285 (5%)
Query: 81 KIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNV 140
++ N E +E + + E E++EL + ++ ++ V ++TLSA ++E+
Sbjct: 204 EVHNDVERLEAASQAVSESS----AEIDELSTA---QSTNVSTVATEVETLSATVQEIAS 256
Query: 141 QAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYV 200
A ++ D + + +A+ G + + A ++ ++ + ++ V L + I+++V V
Sbjct: 257 TADEVVDTSATAERLADDGSAAASDAADMMADVATAADSVTSDVEALQNRIEDIDEVVDV 316
Query: 201 ISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQEN 260
I+ IA QTN+LALNASIEAARAGE G GFAVVAE V+ LA+ ++ +A I +L+ E+Q +
Sbjct: 317 ITGIAEQTNMLALNASIEAARAGEEGEGFAVVAEEVKALAEDAQSNAGHIESLVSEIQRD 376
Query: 261 INRVIQAIQENVRVTEEVKEA---IQNLIAAFDDIARRANETANMVKELSEGIDEQANS- 316
+ + V T+ +++A +++ +A+F++I TA ++++S+ +EQA S
Sbjct: 377 ---TADTVTDLVTTTDRIEDAVAQVEDAMASFEEIVTAVEATAEGIEQVSDATNEQAASA 433
Query: 317 --VQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEI 359
+ +VD ++ D++ + T+ S L L+E E+
Sbjct: 434 EEIAAMVDETADLADDITTAVADIVSQTEAQSAMLHDLDESVSEL 478
>pir||F70028 transmembrane receptor taxis protein homolog yvaQ - Bacillus
subtilis >gi|2635882|emb|CAB15374.1| (Z99121) similar to
transmembrane receptor taxis protein [Bacillus subtilis]
Length = 566
Score = 127 bits (315), Expect = 2e-28
Identities = 87/334 (26%), Positives = 174/334 (52%), Gaps = 39/334 (11%)
Query: 76 INVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGI 135
+N KD++ +L E ++ + + ++ +G ++ SR+ + + +A + ++ S I
Sbjct: 236 LNSKDELGDLNEALQKMVGNLRDI----VGYSKDISSRVLSSSQVLATATNETRSGSKHI 291
Query: 136 EE-MNVQAQQLSDFALESASMAEKGRQISDNVALKVSR---ISETSREMSDA-------- 183
E MN A+ A ++ ++AE + ++++ + IS+TS+ + +
Sbjct: 292 TETMNEMAEGSEQQAQDAVTIAESMNEFTESIDKAYNHGITISDTSQNVLELAVSGNENM 351
Query: 184 --------------------VRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAG 223
VR L ++S+ IN +V VI+ IA QTNLL+LNA+IEAARAG
Sbjct: 352 ATSLQQMKTIHHIVEEAVHKVRSLEQHSQDINKLVQVINGIAEQTNLLSLNAAIEAARAG 411
Query: 224 EAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQ 283
E+G+GFAVVAE VR+LAD S ++I ++ Q+ I+ VI ++ + E+ E +
Sbjct: 412 ESGKGFAVVAEEVRKLADGVSDSVQDITRIVNGTQQEIHTVITYLESSFTEVEKGTENLT 471
Query: 284 NLIAAFDDIARRANETANMVKELSEGIDEQAN---SVQMLVDRIDSISKDVSDNLNFATQ 340
+ A I + A+ +KE+++G+ + N ++ ++ I S+S++ + +
Sbjct: 472 DTGQAMQHIKQSVTHVADSIKEVTDGLKQLTNQSITINQSIENIASVSEESAAGIEETFS 531
Query: 341 LTDTISGSLEKLNEVKEEITKLKENIDRIMGEIS 374
+T+ + S++++ EE+ +L ++ MG+ +
Sbjct: 532 ITEQSAHSMDQVLLNAEELEQLANELNEKMGQFT 565
>sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H3)
>gi|459688|gb|AAA20554.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635610|emb|CAB15104.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635622|emb|CAB15115.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 127 bits (315), Expect = 2e-28
Identities = 82/300 (27%), Positives = 159/300 (52%), Gaps = 16/300 (5%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENV----KIAEVNDYIQTLSA 133
+++ + N+ E L G+ + + + +N N K+ + + ++
Sbjct: 358 IQNSVNNVAASSEQLTASAGQTSKAT-EHITMAIEQFSNGNEEQSRKVESSSHQLNLMNE 416
Query: 134 GIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKK 193
G+++++ + ++ +++S +A G + +++ I+++ ++ V+ L SK
Sbjct: 417 GLQQVSQTSSDITKASIQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKD 476
Query: 194 INDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNL 253
I I+ VI+ IA QTNLLALNA+IEAARAGE+GRGF+VVAE VR+LA +S SA+EI L
Sbjct: 477 ITSILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKL 536
Query: 254 IEEMQENIN-------RVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKEL 306
I+E+ I+ V Q +Q + VT+ KE+ Q++ + ++IA + + V++L
Sbjct: 537 IQEIVAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQL 596
Query: 307 SEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENI 366
S +++ V V I +SK+ S ++ + S+E+++ + ++ E +
Sbjct: 597 S----DRSQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEEL 652
>sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|1435129|emb|CAA64840.1|
(X95588) halobacterial transducer protein III
[Halobacterium salinarum]
Length = 481
Score = 127 bits (315), Expect = 2e-28
Identities = 81/290 (27%), Positives = 165/290 (55%), Gaps = 19/290 (6%)
Query: 81 KIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNV 140
++ N E +E + + E E++EL + ++ ++ V ++TLSA ++E+
Sbjct: 204 EVHNDVERLEAASQAVSESS----AEIDELSTA---QSTNVSTVATEVETLSATVQEIAS 256
Query: 141 QAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYV 200
A ++ D + + +A+ G + + A ++ ++ + ++ V L + I+++V V
Sbjct: 257 TADEVVDTSATAERLADDGSAAASDAADMMADVATAADSVTSDVEALQNRIEDIDEVVDV 316
Query: 201 ISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQEN 260
I+ IA QTN+LALNASIEAARAGE G GFAVVAE V+ LA+ ++ +A I +L+ E+Q +
Sbjct: 317 ITGIAEQTNMLALNASIEAARAGEVGEGFAVVAEEVKALAEDAQSNAGHIESLVSEIQRD 376
Query: 261 INRVIQAIQENVRVTEEVKEA---IQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
+ + V T+ +++A +++ +A+F++I TA ++++S+ +EQA S
Sbjct: 377 ---TADTVTDLVTTTDRIEDAVAQVEDAMASFEEIVTAVEATAEGIEQVSDATNEQAASA 433
Query: 318 QMLVDRIDSISKDVSDNLNFATQLTDTISGSLEK---LNEVKEEITKLKE 364
+ + +D + D++D++ T + D +S + + L ++ E +++L +
Sbjct: 434 EEIAAMVDE-TADLADDI--TTAVADIVSQTEAQSTILXDLDESVSELHD 480
>sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|11277608|pir||T46810
halobacterial transducer protein IV [imported] -
Halobacterium salinarum >gi|1435131|emb|CAA64841.1|
(X95589) halobacterial transducer protein IV
[Halobacterium salinarum]
Length = 810
Score = 127 bits (315), Expect = 2e-28
Identities = 77/270 (28%), Positives = 152/270 (55%), Gaps = 15/270 (5%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V E+ + + + V+ + LSA IEE+ A +++ + ++A +A G Q +++
Sbjct: 527 VQEIAGAADEQRNMLDTVSGEMTDLSAAIEEVAASADSVAEHSHQTAEIARDGEQTAEDA 586
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
+ + E V L + +I++IV +IS IA QTN+LALNA+IEAARA ++G
Sbjct: 587 IERSLSVQEAIDATVQNVEALDDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSG 646
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LA+ +++SA +I I E+Q + + + +A++ ++
Sbjct: 647 DGFAVVADEVKDLAEETQESAGDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVV 706
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
AF ++ A+ET V+E+S+ D+QA+S + V S++++V+D L+D+ +
Sbjct: 707 DAFTAVSDHADETDTGVQEISDTTDDQASSTEEAV----SMTEEVAD-------LSDSTA 755
Query: 347 GSLEKLNEVKEE----ITKLKENIDRIMGE 372
G + ++ EE ++++ ++++ + G+
Sbjct: 756 GEAQSVSAAAEEQAASMSEISDSVESLSGQ 785
>pir||F83280 probable chemotaxis transducer PA2920 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949014|gb|AAG06308.1|AE004718_5 (AE004718) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 545
Score = 127 bits (315), Expect = 2e-28
Identities = 84/290 (28%), Positives = 160/290 (54%), Gaps = 19/290 (6%)
Query: 82 IENLKEVIENLEEKIGEV--KLGDLGEVNELVSRL-NNENVKIAEVNDYIQTLSAGIEEM 138
++ L+ +I + GEV G L + RL N+E+ + +V+ +S+ + E+
Sbjct: 260 LDKLQPLIREVGRVTGEVADSAGSLAGMTAANDRLINSEHASVDQVSTAATQMSSAVHEV 319
Query: 139 NVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
AQ + A ++ A +G + + + ++++ S++++ LA+ + I+ ++
Sbjct: 320 ARNAQSAAQVADDARRQAREGANVVEATIEVIRQLAQEVESSSESIQQLAQETASIDAVL 379
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
VI IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R++ S ++I+ IE +Q
Sbjct: 380 TVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTKDIQARIERLQ 439
Query: 259 ENINRVIQAIQE-NVRVTEEVKEA--IQNLIAAFDDIARRANETANMVKELSEGIDEQAN 315
+ ++A+Q +++ + V+ A + ++AA D R N+ A +++ +EQ+
Sbjct: 440 AGVQNAVRAMQSGSLKARDSVERAAGVDGVLAATGDAVGRINDLA---AQIASACEEQSR 496
Query: 316 SVQMLVDRIDSISKDVSDNLNFATQL---TDTISGSLEKLNEVKEEITKL 362
ID I++++S+ + Q ++ +G+ +L+E+ E+ +L
Sbjct: 497 V-------IDEIARNISEVRELSAQAAEHSEQGTGASRRLSELSSELARL 539
>pir||T44262 transducer protein htrVI [similarity] - Halobacterium salinarum
>gi|4104485|gb|AAD02052.1| (AF036231) transducer HtrVI
[Halobacterium salinarum]
Length = 788
Score = 126 bits (313), Expect = 4e-28
Identities = 89/345 (25%), Positives = 166/345 (47%), Gaps = 27/345 (7%)
Query: 24 ENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIE 83
E++ +A+ +LDG E I DE + + V E
Sbjct: 436 EDADEEAMRAVATEFNAMLDGLEATIAQVAGFADEVA------------DETLQVATGAE 483
Query: 84 NLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQ 143
++ + + E+I E+ G + + ++L R E + LSA I+E+ +
Sbjct: 484 EIETTSQTVSERIQEIADGAIQQHDDL-ERAAGE----------MDELSASIQEVAASSA 532
Query: 144 QLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISS 203
+++ A ++ E GR +++ ++ I S + D + L E I DI+ I+
Sbjct: 533 TVAETAADAVERGEAGRDAAESAIDDMAEIESLSADAVDQILALQERMSDIGDIIEFITD 592
Query: 204 IASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINR 263
IA QTN+LALNA+IEAARA + G GFAVVA V++LA+ +K++A +I + I+ +Q +
Sbjct: 593 IAEQTNMLALNANIEAARADKDGDGFAVVANEVKDLAEETKQAAADIESEIQAVQAETDE 652
Query: 264 VIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDR 323
+ I+ ++ ++ AA +D + + ++E+S+ ++QA++ Q +V R
Sbjct: 653 TVADIRATSEHIDDGVSTVERAAAAIEDTVDAIEDANHGIQEISDATEDQADATQSVVRR 712
Query: 324 IDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDR 368
+D DV+D T+ + +S + E+ + EI + + DR
Sbjct: 713 VD----DVADISQHVTEDAEQVSAAAEEQSASVAEIARSDDLRDR 753
>pir||H83106 chemotactic transducer PctC PA4307 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950530|gb|AAG07695.1|AE004847_2 (AE004847)
chemotactic transducer PctC [Pseudomonas aeruginosa]
Length = 632
Score = 125 bits (312), Expect = 5e-28
Identities = 85/289 (29%), Positives = 148/289 (50%), Gaps = 17/289 (5%)
Query: 89 IENLEEKIGEVK--LGDLGEVNELVSRLNNENVKIA-EVNDYIQTLSAGIEEMNVQAQQL 145
+E + E I EV L +V +LV +N ++ + E ++ +++A I E+ AQ++
Sbjct: 347 VERIHESIREVAGTARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEI 406
Query: 146 -------SDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
S A ++ AE G+Q+ + ++ +SE + L + I I+
Sbjct: 407 ARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQIL 466
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
VI I+ QTNLLALNA+IEAARAGEAGRGFAVVA+ VR LA R+++SA++I+ +IEE+Q
Sbjct: 467 EVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEELQ 526
Query: 259 ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
+ + E+ R + E E + R E +M + ++ +EQ V
Sbjct: 527 VGAREAVATMTESQRYSLESVEIANRAGERLGSVTSRIGEIDSMNQSVATATEEQTAVV- 585
Query: 319 MLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
DS++ D+++ + + + +L E++ + +L+ +D
Sbjct: 586 ------DSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRHLVD 628
>gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium sp. NRC-1]
Length = 810
Score = 125 bits (312), Expect = 5e-28
Identities = 77/270 (28%), Positives = 151/270 (55%), Gaps = 15/270 (5%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V E+ + + + V+ + LSA IEE+ A +++ + ++A +A G Q +++
Sbjct: 527 VQEIAGAADEQRNMLDTVSGEMTDLSAAIEEVAASADSVAEHSHQTAEIARDGEQTAEDA 586
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
+ + E V L + +I++IV +IS IA QTN+LALNA+IEAARA ++G
Sbjct: 587 IERSLTVQEAIDATVQNVEALDDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSG 646
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LA+ +++SA +I I E+Q + + + +A++ ++
Sbjct: 647 DGFAVVADEVKDLAEETQESAGDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVV 706
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
AF ++ A+ET V+E+S+ D+QA S + V S++++V+D L+D+ +
Sbjct: 707 DAFTAVSDHADETDTGVQEISDTTDDQAASTEEAV----SMTEEVAD-------LSDSTA 755
Query: 347 GSLEKLNEVKEE----ITKLKENIDRIMGE 372
G + ++ EE ++++ ++++ + G+
Sbjct: 756 GEAQSVSAAAEEQAASMSEISDSVESLSGQ 785
>gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium sp. NRC-1]
Length = 789
Score = 125 bits (311), Expect = 7e-28
Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 27/343 (7%)
Query: 24 ENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIE 83
E++ +A+ +LDG E I DE + + V E
Sbjct: 436 EDADEEAMRAVATEFNAMLDGLEATIAQVAGFADEVA------------DETLQVATGAE 483
Query: 84 NLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQ 143
++ + + E+I E+ G + + ++L R E + LSA I+E+ +
Sbjct: 484 EIETTSQTVSERIQEIADGAIQQHDDL-ERAAGE----------MDELSASIQEVAASSA 532
Query: 144 QLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISS 203
+++ A ++ E GR +++ ++ I S + D + L E I DI+ I+
Sbjct: 533 TVAETAADAVERGEAGRDAAESAIDDMAEIESLSADAVDQILALQERMSDIGDIIEFITD 592
Query: 204 IASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINR 263
IA QTN+LALNA+IEAARA + G GFAVVA V++LA+ +K++A +I + I+ +Q +
Sbjct: 593 IAEQTNMLALNANIEAARADKDGDGFAVVANEVKDLAEETKQAAADIESEIQAVQAETDE 652
Query: 264 VIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDR 323
+ I+ ++ ++ AA +D + + ++E+S+ ++QA++ Q +V R
Sbjct: 653 TVADIRATSEHIDDGVSTVERAAAAIEDTVDAIEDANHGIQEISDATEDQADATQSVVRR 712
Query: 324 IDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENI 366
+D DV+D T+ + +S + E+ + EI + +++
Sbjct: 713 VD----DVADISQHVTEDAEQVSAAAEEQSASVAEIARSADDL 751
>pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950533|gb|AAG07698.1|AE004847_5 (AE004847)
chemotactic transducer PctB [Pseudomonas aeruginosa]
Length = 629
Score = 125 bits (311), Expect = 7e-28
Identities = 89/293 (30%), Positives = 150/293 (50%), Gaps = 25/293 (8%)
Query: 89 IENLEEKIGEVK--LGDLGEVNELVSRLNNENVKIA-EVNDYIQTLSAGIEEMNVQAQQL 145
+E + E I EV L +V +LV +N ++ + E ++ +++A I E+ AQ++
Sbjct: 344 VERIHESIREVAGTARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEI 403
Query: 146 -------SDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
S A ++ AE G+Q+ + ++ +SE + L + I I+
Sbjct: 404 ARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQIL 463
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
VI I+ QTNLLALNA+IEAARAGEAGRGFAVVA+ VR LA R+++SA++I+ +IEE+Q
Sbjct: 464 EVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEELQ 523
Query: 259 ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
+ + E+ R + E E IA RA E + V ID SV
Sbjct: 524 IGAQEAVSTMTESQRYSLESVE-----------IANRAGERLSSVTGRIAEIDGMNQSVA 572
Query: 319 MLVDR----IDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
+ +DS++ D+++ + + + +L E++ + +L++ +D
Sbjct: 573 TATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLVD 625
>pir||T44258 transducer protein htrXIII [similarity] - Halobacterium salinarum
>gi|4104483|gb|AAD02051.1| (AF036230) soluble transducer
HtrXIII [Halobacterium salinarum]
Length = 423
Score = 124 bits (309), Expect = 1e-27
Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 19/283 (6%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRL--NNENVKIAEVNDYIQTLSAGI 135
V + IE +E+ +N+EE ++ L + N +N+K AE++D +S+ I
Sbjct: 153 VAELIERAREMNQNMEE------------IDRLAAHQSDNTDNLK-AEISD----ISSAI 195
Query: 136 EEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIN 195
E++ A +++D + E+ S+A G + + V +V I + E+ L ++++ I+
Sbjct: 196 EQIAASATEVNDRSDEAQSLATDGYERAVAVVEQVEAIHDGVTEVRHQTATLQDHTEAID 255
Query: 196 DIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIE 255
DIV VI+ IA QTNLLALNASIEAARA G+GFAVVA+ V+ LA+ SK AEEI +E
Sbjct: 256 DIVEVINDIADQTNLLALNASIEAARADAGGQGFAVVADEVKSLAEESKTQAEEIEERVE 315
Query: 256 EMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQAN 315
+Q + E TE+ E+ + F++I + + E+ G + Q
Sbjct: 316 NIQVETRISADSSVELETETEDSLESSTFSLDTFEEIKDLVTGVSTSLDEIKSGTERQTE 375
Query: 316 SVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEE 358
S + L ID ++ + + D L+KL + E
Sbjct: 376 SSEELTMMIDEAARKADTISDEVASMADANHAQLQKLEAYQSE 418
>pir||D82386 methyl-accepting chemotaxis protein VCA1034 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658478|gb|AAF96929.1| (AE004429) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 666
Score = 124 bits (309), Expect = 1e-27
Identities = 92/297 (30%), Positives = 152/297 (50%), Gaps = 24/297 (8%)
Query: 53 LSKEDEEVLKKVAFRLKRGQGKKINVKDKIE--NLKEVIENLEEKIGEVKLGDLGEVNEL 110
+ K +++ ++A+ + ++IN + E L I+ L +K GE+ L ++N
Sbjct: 339 IQKPLQKINHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGEL----LSQINAG 394
Query: 111 VSRLNNENVKIAEVNDYIQT-----------LSAGIEEMNVQAQQLS---DFALESASMA 156
L NE + AE+++ ++A I E+ V A +++ D A + A
Sbjct: 395 SRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRA 454
Query: 157 E-KGRQISDNVALKVSRISETSREMSDAVRI---LAEYSKKINDIVYVISSIASQTNLLA 212
+ + +Q VA + + +M AV I L E+S I I+ VI IA QTNLLA
Sbjct: 455 DAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLA 514
Query: 213 LNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENV 272
LNA+IEAARAG+AGRGFAVVA+ VR LA R++ S EEI+++IE +QE+ +V++ + +
Sbjct: 515 LNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQ 574
Query: 273 RVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISK 329
T E + + +A IA R M +++ EQ Q + + I++
Sbjct: 575 EQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAE 631
>sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|79266|pir||S15910
hemolysin-releasing protein - Vibrio cholerae
>gi|2190531|emb|CAA68638.1| (Y00557) methyl accepting
chemotaxis protein [Vibrio cholerae]
Length = 548
Score = 124 bits (308), Expect = 2e-27
Identities = 88/304 (28%), Positives = 155/304 (50%), Gaps = 20/304 (6%)
Query: 73 GKKINVK-DKIEN-LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQT 130
GK N DK+ + ++EV EN +E + + + S ++ + +V I
Sbjct: 256 GKSFNAFIDKVHHSIEEVAENSKE-LATMASSVSQRAHMTQSNCASQRDRTVQVATAIHE 314
Query: 131 LSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEY 190
L A + E+ A D A E+ + +G+++ V +RI E+ +A ++++
Sbjct: 315 LGATVSEIASNAAMARDVANEATLHSGEGKKVVGEVQ---NRIQTLVNELDNATQVVSSL 371
Query: 191 SKKINDI---VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSA 247
+ +IN I + I SI+ QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA RS S
Sbjct: 372 ATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAAST 431
Query: 248 EEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELS 307
EEI+ +I +Q R ++A+++ ++ V E + +AN++ +
Sbjct: 432 EEIQQVINRLQTESTRAVEAMEKGRSQSDVVVE-----------FSAKANQSLTEINSQI 480
Query: 308 EGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
+ I++Q V + ++ +D++ N+ QLT S ++L+ + +L +D
Sbjct: 481 DQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLD 540
Query: 368 RIMG 371
+++G
Sbjct: 541 KLVG 544
>dbj|BAA23413.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 629
Score = 124 bits (308), Expect = 2e-27
Identities = 89/293 (30%), Positives = 150/293 (50%), Gaps = 25/293 (8%)
Query: 89 IENLEEKIGEVK--LGDLGEVNELVSRLNNENVKIA-EVNDYIQTLSAGIEEMNVQAQQL 145
+E + E I EV L +V +LV +N ++ + E ++ +++A I E+ AQ++
Sbjct: 344 VERIHESIREVAGTARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEI 403
Query: 146 -------SDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
S A ++ AE G+Q+ + ++ +SE + L + I I+
Sbjct: 404 ARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQIL 463
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
VI I+ QTNLLALNA+IEAARAGEAGRGFAVVA+ VR LA R+++SA++I+ +IEE+Q
Sbjct: 464 EVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEELQ 523
Query: 259 ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
+ + E+ R + E E IA RA E + V ID SV
Sbjct: 524 IGAQEAVSTMTESQRYSLESVE-----------IANRAGERLSSVTGRIAEIDGMNQSVA 572
Query: 319 MLVDR----IDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
+ +DS++ D+++ + + + +L E++ + +L++ +D
Sbjct: 573 TATEEQTAVVDSLNMDITEINTLNQEGVENLQATLLACGELETQAGRLRQLVD 625
>gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archaeoglobus
fulgidus] >gi|7483868|pir||E69380 methyl-accepting
chemotaxis protein (tlpC-2) homolog - Archaeoglobus
fulgidus >gi|2649548|gb|AAB90198.1| (AE001031)
methyl-accepting chemotaxis protein (tlpC-2)
[Archaeoglobus fulgidus]
Length = 834
Score = 124 bits (308), Expect = 2e-27
Identities = 82/308 (26%), Positives = 150/308 (48%), Gaps = 21/308 (6%)
Query: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE 117
+E+++K+A +K + + + + ++ + ++ G +E +SRL N
Sbjct: 500 QEIVRKLADDMKETANQVREAAEAVNQMNAGMQQISSASQQIATG-----SENLSRLANA 554
Query: 118 NVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETS 177
+ + + I +++ +A+ + FA E++ AE ++ + I +
Sbjct: 555 STLDLKAAEEI------FKDLTARAENSAKFADEASQNAEMAKKEGVKALEIIKSIVQEV 608
Query: 178 REMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVR 237
S V L + + I + I SIA QTNLLALNA+IEAARAGE GRGFAVVA+ VR
Sbjct: 609 ENASKVVETLEQAVRNIGKVTERIKSIADQTNLLALNAAIEAARAGEHGRGFAVVADEVR 668
Query: 238 ELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRAN 297
+LA+ S+KS EEI ++ +QE +VI+A + + + E I+N + +IA N
Sbjct: 669 KLAEESRKSTEEIDEIVRNVQEETRKVIEATNKVKESSLQGSEGIENALMKAGEIAEAVN 728
Query: 298 ETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDN----------LNFATQLTDTISG 347
M+ +++ +E ++ L + ++ +N + T +S
Sbjct: 729 RINEMLGQVAAKAEEGLAKIEQLARNFEEVASTAEENAASSEETSAAIEEQTAAVQQVSI 788
Query: 348 SLEKLNEV 355
++EK+NE+
Sbjct: 789 AMEKVNEI 796
>pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657614|gb|AAF96132.1| (AE004362) hemolysin
secretion protein HylB [Vibrio cholerae]
Length = 548
Score = 124 bits (308), Expect = 2e-27
Identities = 87/304 (28%), Positives = 156/304 (50%), Gaps = 20/304 (6%)
Query: 73 GKKINVK-DKIEN-LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQT 130
GK N DK+ + ++EV EN +E + + + S ++ + +V I
Sbjct: 256 GKSFNAFIDKVHHSIEEVAENSKE-LATMASSVSQRAHMTQSNCASQRDRTVQVATAIHE 314
Query: 131 LSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEY 190
L A + E+ A +D A ++ + +G+++ V +RI E+ +A ++++
Sbjct: 315 LGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQ---NRIQTLVNELDNATQVVSSL 371
Query: 191 SKKINDI---VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSA 247
+ +IN I + I SI+ QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA RS S
Sbjct: 372 ATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAAST 431
Query: 248 EEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELS 307
EEI+ +I +Q R ++A+++ ++ V E + +AN++ +
Sbjct: 432 EEIQQVINRLQTESTRAVEAMEKGRSQSDVVVE-----------FSAKANQSLTEINSQI 480
Query: 308 EGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
+ I++Q V + ++ +D++ N+ QLT S ++L+ + +L +D
Sbjct: 481 DQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLD 540
Query: 368 RIMG 371
+++G
Sbjct: 541 KLVG 544
>gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium sp. NRC-1]
Length = 764
Score = 124 bits (308), Expect = 2e-27
Identities = 75/269 (27%), Positives = 136/269 (49%), Gaps = 3/269 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V+E+ + ++ EV + LSA EE+ L+D A ++AS + GRQ +++
Sbjct: 484 VDEISDGATEQTDRLHEVAGEVDDLSASAEEVAETVASLADTAGQAASAVDDGRQATEDA 543
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
+ +++ + +DA+ L I +IV VI+ IA QTN+LALNASIEAAR G G
Sbjct: 544 VETMDDVADDAEAAADAMDALDSEMADIGEIVDVIADIADQTNMLALNASIEAARTGADG 603
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V+ LA+ S+ +AE+I + + +Q ++ V ++ + + + +
Sbjct: 604 DGFAVVADEVKTLAEESRDAAEDIESRLLALQGQVSDVADEMRATSDTVSDGRATVGDAA 663
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
A DD+ +T E+ D QA++ + +D ++ + AT + D+ +
Sbjct: 664 TALDDVVSFVADTDTAAGEIRAATDRQAHAASRVASAVDEVAGISQETAAQATAVADSAA 723
Query: 347 GSLEKLNEVKEEITKLKEN---IDRIMGE 372
+ L+ V + L + +D ++ E
Sbjct: 724 TQTDTLSSVDDAAADLADRAAALDDLLAE 752
>gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus xanthus]
Length = 413
Score = 123 bits (306), Expect = 3e-27
Identities = 79/297 (26%), Positives = 147/297 (48%), Gaps = 7/297 (2%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
+V D +L+ EN+ EV + ++ +++ +++ + I ++ I+
Sbjct: 114 SVADTAIDLQRSAENVNGSTEEVG----SSMEKIAGGAESQSQLVSKASKVITEMAGSIQ 169
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
A+ + E++S AE G + + KV ++ S V E +++I+
Sbjct: 170 RTTASAEDAARTTAETSSAAEDGSKAARLAGDKVKKVFNRIESASQQVFAFGEKTQEISK 229
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
IV I+ +A QTNLLALNA+IEAARAGE GRGFAVVA+ VR+LA+ + +SAE+I L +
Sbjct: 230 IVDAITQVAQQTNLLALNATIEAARAGEYGRGFAVVADEVRKLAESAGRSAEQISKLARD 289
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANS 316
+ V+ A++E + E +E + N++ + I + + V +SE EQ
Sbjct: 290 ISGQSTSVVSAMKEGIAELAEGREDLTNIVRSMGAITDTIRKGSEKVHLISESAREQLKG 349
Query: 317 VQMLVDRIDSISKDVSDNLNFATQLTDTI---SGSLEKLNEVKEEITKLKENIDRIM 370
+ +V I+ I +N + + I + ++ ++ + E+T L + ++
Sbjct: 350 SEEMVTAIEEIKLVARNNASSTEAIQAVIQEQTAAVSRMTSLASELTNLSVELQSVV 406
>sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|11385312|pir||T44946
transducer protein htrII [validated] - Halobacterium
salinarum >gi|1527137|gb|AAC44369.1| (U62676) phototaxis
transducer II [Halobacterium salinarum]
Length = 765
Score = 123 bits (305), Expect = 4e-27
Identities = 74/269 (27%), Positives = 136/269 (50%), Gaps = 3/269 (1%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V+E+ + ++ EV + LSA EE+ L+D A ++AS + GRQ +++
Sbjct: 485 VDEISDGATEQTDRLHEVAGEVDDLSASAEEVAETVASLADTAGQAASAVDDGRQATEDA 544
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
+ +++ + +DA+ L I +IV VI+ IA QTN+LALNASIEAAR G G
Sbjct: 545 VETMDDVADDAEAAADAMDALDSEMADIGEIVDVIADIADQTNMLALNASIEAARTGADG 604
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V+ LA+ S+ +AE+I + + +Q ++ V ++ + + + +
Sbjct: 605 DGFAVVADEVKTLAEESRDAAEDIESRLLALQGQVSDVADEMRATSDTVSDGRATVGDAA 664
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
A DD+ +T ++ D QA++ + +D ++ + AT + D+ +
Sbjct: 665 TALDDVVSFVADTDTAAGQIRAATDRQAHAASRVASAVDEVAGISQETAAQATAVADSAA 724
Query: 347 GSLEKLNEVKEEITKLKEN---IDRIMGE 372
+ L+ V + L + +D ++ E
Sbjct: 725 TQTDTLSSVDDAAADLADRAAALDDLLAE 753
>gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archaeoglobus
fulgidus] >gi|7483867|pir||B69379 methyl-accepting
chemotaxis protein (tlpC-1) homolog - Archaeoglobus
fulgidus >gi|2649560|gb|AAB90209.1| (AE001032)
methyl-accepting chemotaxis protein (tlpC-1)
[Archaeoglobus fulgidus]
Length = 677
Score = 122 bits (304), Expect = 5e-27
Identities = 82/309 (26%), Positives = 154/309 (49%), Gaps = 23/309 (7%)
Query: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE 117
+E+++K+A +K + + + + ++ + ++ G +E +SRL N
Sbjct: 343 QEIVRKLADDMKETANQVREAAEAVNQMNAGMQQISSASQQIATG-----SENLSRLANA 397
Query: 118 N-VKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISET 176
+ + + + + L+A +E N Q + ++ + + + +I ++ +V S+
Sbjct: 398 STLDLKAAEEIFRELAAKADESNRQVEAAAERSRIAEQEGGRALEIIKSIVQEVENASKV 457
Query: 177 SREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENV 236
+ AVR + + +++I SIA QTNLLALNA+IEAARAGE GRGFAVVA+ V
Sbjct: 458 VETLEQAVRNIGKVTERIK-------SIADQTNLLALNAAIEAARAGEHGRGFAVVADEV 510
Query: 237 RELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRA 296
R+LA+ S+KS EEI ++ +QE +VI+A + + + E I+ I +I
Sbjct: 511 RKLAEESRKSTEEIDEIVRNVQEETRKVIEATNKVKESSLQGSEGIEAAIKQAGEILGAI 570
Query: 297 NETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDN----------LNFATQLTDTIS 346
N +MVK ++ +E ++ L + ++ +N + T +S
Sbjct: 571 NRINDMVKAVASKAEEGLAKIEQLARNFEEVASTAEENAASSEETSAAIEEQTAAVQQVS 630
Query: 347 GSLEKLNEV 355
++EK+NE+
Sbjct: 631 IAMEKVNEI 639
>pir||A83451 aerotaxis receptor Aer PA1561 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947522|gb|AAG04950.1|AE004584_6
(AE004584) aerotaxis receptor Aer [Pseudomonas
aeruginosa]
Length = 521
Score = 122 bits (304), Expect = 5e-27
Identities = 72/247 (29%), Positives = 129/247 (52%), Gaps = 11/247 (4%)
Query: 114 LNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRI 173
L + + +V + ++A +E+ Q +D ++ + +GR I+ + R+
Sbjct: 271 LEQQRAETEQVATAVNEMAATTQEVANNVQLTADATQKANELTSRGRDIAAETRNAIQRL 330
Query: 174 SETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVA 233
SE+ E AV LA+ S +I +V VI IA QTNLLALNA+IEAARAG+ GRGFAVVA
Sbjct: 331 SESVGETGAAVSRLAQDSNEIGGVVDVIKGIADQTNLLALNAAIEAARAGDQGRGFAVVA 390
Query: 234 ENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIA 293
+ VR LA R+ S E+I +LI ++Q N + ++ ++ E + + +A I+
Sbjct: 391 DEVRSLAQRTAASTEQIHHLIAKLQNTANDAVHTMESGLQQAEAGVQRVLEADSALVGIS 450
Query: 294 RRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLN 353
+ M +++ +EQ+ +++++++ N++ L + S +
Sbjct: 451 EAVSNITEMTTQIAAAAEEQS-----------AVAEEINRNISTIAALAEQTSDEALRTA 499
Query: 354 EVKEEIT 360
++ EE+T
Sbjct: 500 KLSEELT 506
>dbj|BAA23410.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 632
Score = 122 bits (302), Expect = 8e-27
Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 17/289 (5%)
Query: 89 IENLEEKIGEVK--LGDLGEVNELVSRLNNENVKIA-EVNDYIQTLSAGIEEMNVQAQQL 145
+E + E I EV L +V +LV +N ++ + E ++ +++A I E+ AQ++
Sbjct: 347 VERIHESIREVAGTARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEI 406
Query: 146 -------SDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
S A ++ AE G+Q+ + ++ +SE + L + I I+
Sbjct: 407 ARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQIL 466
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
VI I+ QTNLLALNA+IEAAR GEAGRGFAVVA+ VR LA R+++SA++I+ +IEE+Q
Sbjct: 467 EVIKGISEQTNLLALNAAIEAARDGEAGRGFAVVADEVRNLAHRAQESAQQIQKMIEELQ 526
Query: 259 ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
+ + E+ R + E E + R E +M + ++ +EQ V
Sbjct: 527 VGAREAVATMTESQRYSLESVEIANRAGERLGSVTSRIGEIDSMNQCVATATEEQTAVV- 585
Query: 319 MLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
DS++ D+++ + + + +L E++ + +L+ +D
Sbjct: 586 ------DSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRHLVD 628
>pir||G82490 methyl-accepting chemotaxis protein VCA0176 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657567|gb|AAF96089.1| (AE004358) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 644
Score = 122 bits (302), Expect = 8e-27
Identities = 78/293 (26%), Positives = 151/293 (50%), Gaps = 14/293 (4%)
Query: 82 IENLKEVIENLEEKIGEVKLGDLGEVNE-LVSRLNNENVK--IAEVNDYIQTLSAGIEEM 138
IE + + I+++ + E+++ G + LV+ N++ + +V I + A I E+
Sbjct: 359 IEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEI 418
Query: 139 NVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
A ++ A +++ A++GR + + +SR++ V LA +++I I+
Sbjct: 419 ASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSIL 478
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
I I+ QTNLLALNA+IEAARAG+ GRGFAVVA+ VR LA R+ S EEI+ +I ++Q
Sbjct: 479 DAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQ 538
Query: 259 ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
+ + A+ VT + A + I+ R ++ ++ +++ +EQ+ V
Sbjct: 539 NDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVH 598
Query: 319 MLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMG 371
+ I+ I+ + + + + E+L + + + +L +D+++G
Sbjct: 599 TINQNIEEIN-----------AINEVTTSTAEELADASKSLRELSGRLDKLVG 640
>gb|AAA23567.1| (M13463) sensory transducer protein [Escherichia coli]
Length = 535
Score = 120 bits (299), Expect = 2e-26
Identities = 83/279 (29%), Positives = 149/279 (52%), Gaps = 35/279 (12%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEE 137
++ + ++++ + + I E+ G+ N+L SR + +A+ ++ L+A + +
Sbjct: 259 LRGTVSDVRKGSQEMHIGIAEIVAGN----NDLSSRTEQQAASLAQTAASMEQLTATVGQ 314
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDI 197
A+Q S+ A +A+ A+ G ++VS ++ T +E +A S+KI DI
Sbjct: 315 NADNARQASELAKNAATTAQGG-------GVQVSTMTHTMQE-------IATSSQKIGDI 360
Query: 198 VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEM 257
+ VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE
Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIE-- 418
Query: 258 QENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
E++NRV Q + + N A DI +++ E++ +EQ +
Sbjct: 419 -ESVNRVQQG-----------SKLVNNAAATMIDIVSSVTRVNDIMGEIASASEEQQRGI 466
Query: 318 QML---VDRIDSISKDVSDNLNFATQLTDTISGSLEKLN 353
+ + V ++D +++ + + A T+ ++ ++L+
Sbjct: 467 EQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADRLS 505
>sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|421715|pir||A47190 transducer
protein htrI [validated] - Halobacterium salinarum
>gi|305352|gb|AAA72315.1| (L05603) sensory rhodopsin I
transducer [Halobacterium halobium]
>gi|10581131|gb|AAG19913.1| (AE005075) Htr1 transducer;
Htr1 [Halobacterium sp. NRC-1]
Length = 536
Score = 120 bits (299), Expect = 2e-26
Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 12/291 (4%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEE 137
++ K E + E ++E G+ + V+++ S+ N++ ++ D +Q +SA EE
Sbjct: 211 IEAKTERMSETSADIEASAGDT----VEAVSKIESQANDQRTELDSAADDVQQVSASAEE 266
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAV---RILAEYSKKI 194
+ A + D A S +A D+ + +S E+ DAV L + +I
Sbjct: 267 I---AATIDDLASRSEDVATASDAARDSSKSALDEMSSIETEVDDAVGQVEQLRDQVAEI 323
Query: 195 NDIVYVISSIASQTNLLALNASIEAARAG--EAGRGFAVVAENVRELADRSKKSAEEIRN 252
DIV VI+ I QTN+LALNASIEAARAG G GF+VVA+ V++LA+ ++ A EI
Sbjct: 324 TDIVDVITDIGEQTNMLALNASIEAARAGGNADGDGFSVVADEVKDLAEETQDRANEIAA 383
Query: 253 LIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDE 312
++E++ V +IQ+ E E +++ + IA E +N + E+ E
Sbjct: 384 VVEKVTAQTEDVTASIQQTRTRVESGSETVESTLRDIRTIADSIAEVSNSIDEIQRTTSE 443
Query: 313 QANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLK 363
QA +VQ ++ ++ D A+ + G E E+ + + +
Sbjct: 444 QAETVQSTATSVERVAGLSDDTTALASDAESAVIGQRESAEEIAASLEQFQ 494
>sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1361920|pir||S55299
sensory rhodopsin II transducer protein -
Natronobacterium pharaonis >gi|510869|emb|CAA84468.1|
(Z35086) sensory rhodopsin II transducer [Natronomonas
pharaonis]
Length = 534
Score = 120 bits (298), Expect = 2e-26
Identities = 74/295 (25%), Positives = 141/295 (47%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
D + E + E + E V + ++ + ++ + +SA EE+
Sbjct: 217 DAVSEDAEAVRANAESVMEASEDVNRAVQNISDAAGDQTETVQQIALEMDDVSATTEEVA 276
Query: 140 VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVY 199
A ++ A ++A E GR+ ++ +++ + + + ++ L E ++I ++
Sbjct: 277 ASADDIAKTARQAAETGEAGRETAETAITEMNEVESRTEQAVASMEELNEDVREIGEVSE 336
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQE 259
+I+ IA QTN+LALNASIEAARA GFAVVA+ V+ LA+ +K + EEI +LI +Q+
Sbjct: 337 MIADIAEQTNILALNASIEAARADGNSEGFAVVADEVKALAEETKAATEEIDDLIGTVQD 396
Query: 260 NINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQM 319
+ I+E E E +++ + A + I T + ++E+++ D QA++ Q
Sbjct: 397 RTQTTVDDIRETSDQVSEGVETVEDTVDALERIVDSVERTNDGIQEINQSTDAQADAAQK 456
Query: 320 LVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGEIS 374
++ ++ + A +T E + EV + I L E D + +S
Sbjct: 457 ATTMVEDMAATSEQTASDAETAAETTETQAESVKEVFDLIDGLSEQADSLSETLS 511
>sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|11277604|pir||T48897
transducer protein VI (htp6, htD) [imported] -
Halobacterium salinarum >gi|1435134|emb|CAA64843.1|
(X95590) halobacterial transducer protein VI
[Halobacterium salinarum]
Length = 778
Score = 120 bits (298), Expect = 2e-26
Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 6/262 (2%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V + R ++ ++ V +SA IEE+ A Q+++ + +A++ + G+ + +
Sbjct: 499 VGRIRDRAADQRDQLEAVASETDEMSATIEEVAASADQVAETSQRAAALGDDGQAAAQDA 558
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ I + ++ + AV L +I IV I+ IA QTN+LALNA+IEAARA + G
Sbjct: 559 VAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAITDIAEQTNMLALNANIEAARADQDG 618
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LAD SK SA EI L+ E++ + A+ R+ E V + ++ +
Sbjct: 619 DGFAVVADEVKDLADESKASAAEIEALVAEVRAQTETSVAAMD---RIQERVSDGVETVS 675
Query: 287 ---AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTD 343
+ +IA R E V+E+S +D+QA SV + + ++ + A D
Sbjct: 676 ETERSLSEIAGRIAEADTGVQEISNAMDDQAASVSDVTTAVGDVAALGEETATEAESTAD 735
Query: 344 TISGSLEKLNEVKEEITKLKEN 365
+ L++V + L E+
Sbjct: 736 AAAEQASTLSDVAAQTETLAEH 757
>pir||E82431 methyl-accepting chemotaxis protein VCA0663 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658080|gb|AAF96564.1| (AE004396) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 587
Score = 120 bits (298), Expect = 2e-26
Identities = 76/288 (26%), Positives = 142/288 (48%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
DK E+L + ++ E+ +++ + N ++ + + +Q + + I E++
Sbjct: 300 DKFEHLISSSQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEIS 359
Query: 140 VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVY 199
D ++A AE+GR + + +S T ++ ++ L + +KI V
Sbjct: 360 ESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVS 419
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQE 259
+I IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R+ +S EEI ++ +Q
Sbjct: 420 IIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQS 479
Query: 260 NINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQM 319
+++V+ I +E A + L + I R + + + ++ I+EQ + +
Sbjct: 480 QMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNH 539
Query: 320 LVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
+ + I ++ +N+ A Q + + + + E + + + N D
Sbjct: 540 VSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFRTNRD 587
>sp|P07018|MCP4_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN IV (MCP-IV) (DIPEPTIDE
CHEMORECEPTOR PROTEIN) >gi|7428890|pir||QRECM2
methyl-accepting chemotaxis protein II - Escherichia
coli >gi|1736538|dbj|BAA15701.1| (D90830)
Methyl-accepting chemotaxis protein IV (MCP-IV)
(Dipeptide chemoreceptor protein). [Escherichia coli]
>gi|1736544|dbj|BAA15706.1| (D90831) Methyl-accepting
chemotaxis protein IV (MCP-IV) (Dipeptide chemoreceptor
protein). [Escherichia coli] >gi|1788194|gb|AAC74955.1|
(AE000282) methyl-accepting chemotaxis protein IV,
peptide sensor receptor [Escherichia coli K12]
Length = 533
Score = 120 bits (297), Expect = 3e-26
Identities = 83/279 (29%), Positives = 148/279 (52%), Gaps = 35/279 (12%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEE 137
++ + ++++ + + I E+ G+ N+L SR + +A+ ++ L+A + +
Sbjct: 259 LRGTVSDVRKGSQEMHIGIAEIVAGN----NDLSSRTEQQAASLAQTAASMEQLTATVGQ 314
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDI 197
A+Q S+ A +A+ A+ G ++VS ++ T +E +A S+KI DI
Sbjct: 315 NADNARQASELAKNAATTAQAG-------GVQVSTMTHTMQE-------IATSSQKIGDI 360
Query: 198 VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEM 257
+ VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE
Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIE-- 418
Query: 258 QENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
E++NRV Q + + N A DI +++ E++ +EQ +
Sbjct: 419 -ESVNRVQQG-----------SKLVNNAAATMIDIVSSVTRVNDIMGEIASASEEQQRGI 466
Query: 318 QML---VDRIDSISKDVSDNLNFATQLTDTISGSLEKLN 353
+ + V ++D +++ + + A T+ ++ + L+
Sbjct: 467 EQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLS 505
>gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [Pseudomonas putida]
Length = 538
Score = 120 bits (297), Expect = 3e-26
Identities = 81/311 (26%), Positives = 157/311 (50%), Gaps = 18/311 (5%)
Query: 71 GQGKKINVKDKIE----NLKEVIENLEEKIGEVKLG--DLGEVNELVSR-LNNENVKIAE 123
G+ + +V+ ++ NL+ +++++ ++ +L E ++ ++ +N ++
Sbjct: 238 GRNEVTDVQQSVQAMQANLRNTLQDIQGSAAQLAAAAEELQTATESTAQGIHRQNDEMQM 297
Query: 124 VNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDA 183
+ +SA ++E+ A + S+ + E+ +A+ GR+ + R+S E +
Sbjct: 298 AATAVTEMSAAVDEVADNANRTSNASHEAMDLADGGRKQVMLTRETIDRLSGKLNETTRT 357
Query: 184 VRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRS 243
V LAE + I ++ VI +IA QT LLALNA+IEAA AGEAGRGFAVVA+ VR LA R+
Sbjct: 358 VFRLAEEASNIGRVLDVIRAIAEQTKLLALNAAIEAAHAGEAGRGFAVVADEVRNLAQRT 417
Query: 244 KKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMV 303
+ S +EI +I +Q ++ +Q++ + A IA R E M
Sbjct: 418 QTSTQEIERMISAIQSVTQEGVRDVQQSCEFAARSQTMSSEADQALTLIAERITEINGMN 477
Query: 304 KELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLK 363
++ +EQA ++++V NL + +++ + +++ +E EE+ +L
Sbjct: 478 LVIASAAEEQA-----------QVAREVDRNLVAISDISEQSTAGVQQTSEASEELARLA 526
Query: 364 ENIDRIMGEIS 374
N++ ++ S
Sbjct: 527 ANLNNLVNRFS 537
>dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 678
Score = 120 bits (297), Expect = 3e-26
Identities = 72/252 (28%), Positives = 136/252 (53%), Gaps = 10/252 (3%)
Query: 120 KIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSRE 179
+I I+ LSA I+ M+ A Q+++ A +A+++ G + + + K ++
Sbjct: 412 EIEHAKSDIEKLSAQIDWMDQTASQINELAASTANVSASGLEQVETLREKTEEHERIIQK 471
Query: 180 MSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVREL 239
M V +++I IV +I S + QTNLLALNASIEAARAGE G+GF+VVAE +R+L
Sbjct: 472 MEGIVNHFVHQTEEILSIVELIQSFSEQTNLLALNASIEAARAGEYGKGFSVVAEEIRKL 531
Query: 240 ADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANET 299
A++S K+ I++ +++++E+ + + + + E + + IA+F I+ +
Sbjct: 532 AEQSTKATNNIQSAVQKIKESGAHATEEMTKTAAQSAEQVKRVDQSIASFTHISSNIEQV 591
Query: 300 ANMVKEL---SEGIDEQANSVQMLVDRIDSISKD-------VSDNLNFATQLTDTISGSL 349
N +K + + ++E N + ++ I S+D +S ++ + +TI S
Sbjct: 592 VNSIKTVVKQLQTMNESRNQAVLAINNIAGTSQDTAAAAEQISASIEELVNVLNTIGTSS 651
Query: 350 EKLNEVKEEITK 361
E+LN + +++ K
Sbjct: 652 ERLNTLSDDLNK 663
>gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium sp. NRC-1]
Length = 778
Score = 120 bits (297), Expect = 3e-26
Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 6/262 (2%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V + R ++ ++ V +SA IEE+ A Q+++ + +A++ + G+ + +
Sbjct: 499 VGRIRDRAADQRDQLEAVASETDEMSATIEEVAASADQVAETSQRAAALGDDGQAAAQDA 558
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ I + ++ + AV L +I IV I+ IA QTN+LALNA+IEAARA + G
Sbjct: 559 VAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAITDIAEQTNMLALNANIEAARADQDG 618
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LAD SK SA EI L+ E++ + A+ R+ E V + ++ +
Sbjct: 619 DGFAVVADEVKDLADESKASAAEIEALVAEVRAQTETSVAAMD---RIQERVSDGVETVS 675
Query: 287 ---AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTD 343
+ +IA R E V+E+S +D+QA SV + + ++ + A D
Sbjct: 676 ETERSLSEIAGRIAEADTGVQEISNAMDDQAASVSDVTTAVGDVAALGEETATEAESTAD 735
Query: 344 TISGSLEKLNEVKEEITKLKEN 365
+ L++V + L E+
Sbjct: 736 AAAEQATTLSDVAAQTETLAEH 757
>sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDUCER (CITRATE
CHEMORECEPTOR PROTEIN) >gi|421247|pir||A47178
methyl-accepting transmembrane citrate/phenol
chemoreceptor Tcp - Salmonella typhimurium
>gi|154381|gb|AAA27231.1| (L06029) chemoreceptor
[Salmonella typhimurium]
Length = 547
Score = 119 bits (296), Expect = 4e-26
Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 27/308 (8%)
Query: 32 QAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIEN 91
Q I+ +++ + DG + + E + ++A LK Q I + +++ ++
Sbjct: 222 QRIMAHIQTIADG---DLTHEIEAEGRSEMGQLAAGLKTMQQSLIRT---VSAVRDNADS 275
Query: 92 LEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALE 151
+ GE+ G ++L SR + + E ++ L+A + + A+Q + A
Sbjct: 276 IYTGAGEISAGS----SDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKT 331
Query: 152 SASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLL 211
++ A KG ++ DNV VS +++ +AE S+KI DI VI IA QTN+L
Sbjct: 332 ASETARKGGRVVDNV---VSTMND-----------IAESSEKIVDITSVIDGIAFQTNIL 377
Query: 212 ALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQEN 271
ALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE I+ ++E
Sbjct: 378 ALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREA 437
Query: 272 VRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQM---LVDRIDSIS 328
+E+ A+ + +IA ++E + ++++++ + E + Q LV+ + +
Sbjct: 438 GETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAA 497
Query: 329 KDVSDNLN 336
+ D N
Sbjct: 498 AALEDQAN 505
>dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 560
Score = 119 bits (296), Expect = 4e-26
Identities = 97/391 (24%), Positives = 185/391 (46%), Gaps = 53/391 (13%)
Query: 4 SILSLISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKK 63
SI++ + L F++ K + + +T A R V DG + + DE
Sbjct: 186 SIVAFVLAIVLAFITSKMITKPLARLTKVA-----RHVADGDLTTERVKIKNRDEIGQLN 240
Query: 64 VAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAE 123
+F + ENL+ +I+ + + +V + +L + + +
Sbjct: 241 ESFEAMK------------ENLRGLIQRILQNADQVAVSS----EQLSASAEQTSSATEQ 284
Query: 124 VNDYIQTLSAG--------------IEEMNVQAQQLSDFALESAS-------MAEKGRQI 162
I+++S G +EEMN +++D A + S A +G +
Sbjct: 285 TTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMTDGAKQIESNANLTLTYANEGDTL 344
Query: 163 SDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARA 222
+ I E+ + A++ L++ S+ I +I+ VI SIA QTNLLALNA+IEAARA
Sbjct: 345 VKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILDVIQSIAEQTNLLALNAAIEAARA 404
Query: 223 GEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQ---AIQENVRV----T 275
GE G+GFAVVAE VR+LA+ S +S ++I +LI+EM + N ++ ++E V V
Sbjct: 405 GEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVKETNNSVEKMGLVKEEVSVGLKTA 464
Query: 276 EEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNL 335
+ E +++A+ + + + +E++E E A SVQ + S++++ ++
Sbjct: 465 AQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKSTEVATSVQNMA----SVAEESAEQS 520
Query: 336 NFATQLTDTISGSLEKLNEVKEEITKLKENI 366
+ + + + S++++ ++T++ E +
Sbjct: 521 SSVSAVAEETLASMQEVTASANQLTEMAETL 551
>sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >gi|1075831|pir||D54078
methyl-accepting chemotaxis protein tlpB - Bacillus
subtilis >gi|459691|gb|AAA20557.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635607|emb|CAB15101.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635619|emb|CAB15112.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 119 bits (295), Expect = 5e-26
Identities = 74/260 (28%), Positives = 141/260 (53%), Gaps = 11/260 (4%)
Query: 117 ENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISET 176
++ K+ ++++ ++ GI ++ + ++ +++S+ A G ++ ++ ++ I ++
Sbjct: 399 QSEKLETSSNHLSQMNEGISKVAQASSTITKSSIQSSEAAGSGEKLVEHTVGQMKTIDQS 458
Query: 177 SREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENV 236
++ V+ L S+ I I+ VI+ IA QTNLLALNA+IEAARAGE GRGF+VVAE V
Sbjct: 459 VQKAEAVVKGLETKSQDITSILNVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEV 518
Query: 237 RELADRSKKSAEEIRNLIEEMQENIN-------RVIQAIQENVRVTEEVKEAIQNLIAAF 289
R+LA +S SA+EI LI+E+ I+ V ++E +++T++ E+ + +
Sbjct: 519 RKLAVQSADSAKEIEGLIQEIVREISTSLSMFQSVNHEVKEGLQITDQTAESFKQIYEMT 578
Query: 290 DDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSL 349
I+ V++LS G E V V+ I +++K+ S + + S+
Sbjct: 579 TQISGELQNLNATVEQLSAGSQE----VSSAVEDISAVAKESSAGIQDIAASAEEQLASM 634
Query: 350 EKLNEVKEEITKLKENIDRI 369
E+++ E + + E + I
Sbjct: 635 EEISSSAETLANMAEELQDI 654
>pir||H82379 methyl-accepting chemotaxis protein VCA1092 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658538|gb|AAF96984.1| (AE004434) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 678
Score = 119 bits (295), Expect = 5e-26
Identities = 75/229 (32%), Positives = 124/229 (53%), Gaps = 7/229 (3%)
Query: 112 SRLNNENVKIAEVND----YIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVA 167
+R+ + +IA+ N+ ++ ++ +EE ++++ ++A A+ ++ + A
Sbjct: 385 ARVATASTEIADGNNDLSQRVEAQASNLEETAASMEEITATVRQNADNAKDANLLATDAA 444
Query: 168 LKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGR 227
K +R E E A+ + SKKI DI+ VI IA QTNLLALNA++EAARAGE GR
Sbjct: 445 KKAARGGEVVGEAISAMGAINTASKKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGR 504
Query: 228 GFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIA 287
GFAVVA VR LA RS +A+EI+ LI + + +N + + E+ +E+ EA+ +
Sbjct: 505 GFAVVAGEVRNLAQRSAGAAKEIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVVRVSD 564
Query: 288 AFDDIARRANETANMVKELSEGI---DEQANSVQMLVDRIDSISKDVSD 333
IA + E + + E++ I DE LV+ + S+ + D
Sbjct: 565 LIAQIAASSVEQSTGIDEINRAIAAMDEMTQQNASLVEETSAASQSLKD 613
>sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|280349|pir||S28466 transducer
rhodopsin - Halobacterium salinarium
>gi|2648028|emb|CAA48578.1| (X68591) halobacterial
transducer rhodopsin (Htr) [Halobacterium salinarum]
Length = 536
Score = 118 bits (294), Expect = 7e-26
Identities = 78/288 (27%), Positives = 141/288 (48%), Gaps = 6/288 (2%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEE 137
++ K E + E ++E G+ + V+++ S+ N++ ++ D +Q +SA EE
Sbjct: 211 IEAKTERMSETSADIEASAGDT----VEAVSKIESQPNDQRTELDSAADDVQQVSASAEE 266
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDI 197
+ L+ + + A+ ++ R S + ++S I + V L + +I DI
Sbjct: 267 IAATIDDLASRSEDVATASDAARDSSKSALDEMSSIETEVDDPVGQVEHLRDQVAEITDI 326
Query: 198 VYVISSIASQTNLLALNASIEAARAG--EAGRGFAVVAENVRELADRSKKSAEEIRNLIE 255
V VI+ I QTN+LALNASIEAARAG G GF+VVA+ V++LA+ ++ A EI ++E
Sbjct: 327 VDVITDIGEQTNMLALNASIEAARAGGNADGDGFSVVADEVKDLAEETQDRANEIAAVVE 386
Query: 256 EMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQAN 315
++ V +IQ E E +++ + IA +E +N + E+ EQA
Sbjct: 387 KVTAQTEDVTASIQHTRTRVESGSETVESTLLHIRTIADSISEVSNSIDEIQRTTSEQAE 446
Query: 316 SVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLK 363
+VQ ++ ++ D A+ + G E E+ + + +
Sbjct: 447 TVQSTATSVERVAGLSDDTTALASDAESPVIGQRESAEEIAASLEQFQ 494
>pir||S56581 methyl-accepting chemotaxis protein I - Escherichia coli
>gi|537197|gb|AAA97252.1| (U14003) CG Site No. 63;
alternate gene name cheD [Escherichia coli]
Length = 551
Score = 118 bits (294), Expect = 7e-26
Identities = 81/274 (29%), Positives = 142/274 (51%), Gaps = 24/274 (8%)
Query: 83 ENLKEVIENLEEKIGEVKLG------DLGEV----NELVSRLNNENVKIAEVNDYIQTLS 132
E+L+ + L +G+V+ G E+ N+L SR + + E ++ L+
Sbjct: 254 ESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLT 313
Query: 133 AGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSK 192
A +++ A+Q S AL ++ A++G ++ DNV +T R++S + S+
Sbjct: 314 ATVKQNAENARQASHLALSASETAQRGGKVVDNVV-------QTMRDISTS-------SQ 359
Query: 193 KINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRN 252
KI DI+ VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A EI++
Sbjct: 360 KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKS 419
Query: 253 LIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDE 312
LIE+ ++ ++ E+ A+ + +IA ++E + + ++ + E
Sbjct: 420 LIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAE 479
Query: 313 QANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
Q ++ + + A++LT+ ++
Sbjct: 480 MDRVTQQNAALVEESAAAAAALEEXASRLTEAVA 513
>pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synechocystis sp.
(strain PCC 6803) >gi|1001300|dbj|BAA10787.1| (D64006)
methyl-accepting chemotaxis protein I [Synechocystis
sp.]
Length = 891
Score = 118 bits (294), Expect = 7e-26
Identities = 74/285 (25%), Positives = 142/285 (48%), Gaps = 3/285 (1%)
Query: 82 IENLKEVIENLEEKIGE-VKLGDLGEV--NELVSRLNNENVKIAEVNDYIQTLSAGIEEM 138
IE+L+ ++ ++ + + D EV +L + N + + +AE + +Q ++ I+ +
Sbjct: 605 IESLRRIVTQVQTAASQFTETTDTNEVAVRQLAQQANRQALDVAEALERLQAMNKSIQAV 664
Query: 139 NVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIV 198
A Q + ++G + + I ET + V+ L E S+KI+ +V
Sbjct: 665 AENAAQAESAVQRATQTVDQGEDAMNRTVDGIVAIRETVAATAKQVKRLGESSQKISKVV 724
Query: 199 YVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ 258
+I S A QTNLLALNA+IEAA AGE GRGFAVVA+ VR LA +S ++ EI L+ +Q
Sbjct: 725 NLIGSFADQTNLLALNAAIEAAHAGEEGRGFAVVADEVRSLARQSAEATAEIAQLVATIQ 784
Query: 259 ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
N V+ A++ + ++ + + I + + + +V+ ++ EQ+ + +
Sbjct: 785 AETNEVVNAMEAGTEQVVVGTKLVEETRRSLNQITAVSAQISGLVEAITSAAIEQSQTSE 844
Query: 319 MLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLK 363
+ + +++ N + A+ ++ T L ++E + + K
Sbjct: 845 SVTQTMALVAQIADKNSSEASGVSATFKELLAVAQSLQEAVKQFK 889
>pir||T44606 transducer protein htpIV [similarity] - Halobacterium salinarum
>gi|1654427|gb|AAB17884.1| (U75439) transducer HtF
protein [Halobacterium salinarum]
Length = 804
Score = 118 bits (294), Expect = 7e-26
Identities = 75/270 (27%), Positives = 149/270 (54%), Gaps = 16/270 (5%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V E+ + + + V+ + LSA IEE+ A +++ + ++A +A G Q +++
Sbjct: 522 VQEIAGAADEQRNMLDTVSGEMTDLSAAIEEV-ASADSVAEHSHQTAEIARDGEQTAEDA 580
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
+ + E V L + +I++IV +IS IA QTN+LALNA+IEAARA ++G
Sbjct: 581 IERSLTVQEAIDATVQNVEALDDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSG 640
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++ A+ +++SA +I I E+Q + + + +A++ ++
Sbjct: 641 DGFAVVADEVKDFAEETQESAGDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVV 700
Query: 287 AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTIS 346
AF ++ ++ET V+E+S+ D+QA S + V S++++V+D L+D+ +
Sbjct: 701 DAFTAVSDHSDETDTGVQEISDTTDDQAASTEEAV----SMTEEVAD-------LSDSTA 749
Query: 347 GSLEKLNEVKEE----ITKLKENIDRIMGE 372
G + ++ EE ++++ + ++ + G+
Sbjct: 750 GEAQSVSATAEEQAASMSEISDTVESLSGQ 779
>pir||H82503 methyl-accepting chemotaxis protein VCA0068 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657452|gb|AAF95982.1| (AE004350) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 547
Score = 118 bits (294), Expect = 7e-26
Identities = 75/272 (27%), Positives = 147/272 (53%), Gaps = 13/272 (4%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
+V + L++ +E+L +V EL + + +V + ++ +++ +
Sbjct: 257 DVNATVTQLRQTVESLVRISTDVASAS----TELATVMTQASVNSDQEKQEVEQVASAVN 312
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKV--------SRISETSREMSDAVRILA 188
++ AQ ++D A + A++ Q++ +L++ +++++ RE + V L
Sbjct: 313 QLQSTAQSVTDHAHSADGAAQQANQLASQ-SLRMFEESHRATAKMADQLREAAQVVNQLK 371
Query: 189 EYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAE 248
E S++I ++ VI SI+ QTNLLALNA+IEAARAGE+GRGFAVVA+ VR LA R++ S +
Sbjct: 372 EQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQ 431
Query: 249 EIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSE 308
EI+ +IEE+Q N ++ ++ + E+ + + A+ +I + + +++
Sbjct: 432 EIQAIIEELQNQSNTANSSMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVAT 491
Query: 309 GIDEQANSVQMLVDRIDSISKDVSDNLNFATQ 340
+EQ+ + + + +I + VS N+ TQ
Sbjct: 492 ASEEQSQVTKDINRNLSNIYELVSQNVTGITQ 523
>pir||A83314 probable chemotaxis transducer PA2654 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948724|gb|AAG06042.1|AE004694_5 (AE004694) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 714
Score = 118 bits (294), Expect = 7e-26
Identities = 73/251 (29%), Positives = 130/251 (51%), Gaps = 11/251 (4%)
Query: 120 KIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSRE 179
+I +V ++A +++ A Q +D A + G + D + ++
Sbjct: 470 EIDQVATASHEMTATAQDVARSAAQAADAARGADQATRDGLALIDRTTQSIDSLAANLTS 529
Query: 180 MSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVREL 239
V LA S++I ++ VI +IA QTNLLALNA+IEAARAG+AGRGFAVVA+ VR L
Sbjct: 530 AMGQVEQLASSSEEIGSVLEVIRAIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRNL 589
Query: 240 ADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANET 299
A R++ S E+IR +IE +Q+ V+ A+ + R + E + +AA I
Sbjct: 590 ARRTQDSVEQIRGVIEGLQQGTRDVVDAMHGSHRQAQGSVEQVDEAVAALQRIGEAVTVI 649
Query: 300 ANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEI 359
+M +++ +EQ+ S++++++ N+ +T+++S E+ +V + +
Sbjct: 650 NDMNLQIASAAEEQS-----------SVAEEINRNVAAIRDVTESLSSQAEESAQVSQSL 698
Query: 360 TKLKENIDRIM 370
+L + +M
Sbjct: 699 NRLANHQQGLM 709
>emb|CAA23676.1| (V00373) serine chemoreceptor [Escherichia coli]
>gi|223623|prf||0903250A protein,tsr transducer
[Escherichia coli]
Length = 536
Score = 118 bits (293), Expect = 9e-26
Identities = 84/252 (33%), Positives = 134/252 (52%), Gaps = 32/252 (12%)
Query: 83 ENLKEVIENLEEKIGEVKLG------DLGEV----NELVSRLNNENVKIAEVNDYIQTLS 132
E+L+ + L +G+V+ G E+ N+L SR + + E ++ L+
Sbjct: 254 ESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLT 313
Query: 133 AGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSK 192
A +++ A+Q S AL ++ A++G ++ DNV +T R++S + S+
Sbjct: 314 ATVKQNAENARQASHLALSASETAQRGGKVVDNVV-------QTMRDISTS-------SQ 359
Query: 193 KINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRN 252
KI DI+ VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A EI++
Sbjct: 360 KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKS 419
Query: 253 LIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDE 312
LIE+ + + + E E + +++A + E A+ E S GID+
Sbjct: 420 LIEDS-------VGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQ 472
Query: 313 QANSVQMLVDRI 324
+V + DR+
Sbjct: 473 VGLAVAEM-DRV 483
>sp|P02942|MCP1_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN I (MCP-I) (SERINE CHEMORECEPTOR
PROTEIN) >gi|7428892|pir||QRECS serine chemoreceptor
protein - Escherichia coli >gi|148077|gb|AAA24700.1|
(J01718) methyl-accepting chemotaxis protein I
[Escherichia coli] >gi|2367378|gb|AAC77311.1| (AE000506)
methyl-accepting chemotaxis protein I, serine sensor
receptor [Escherichia coli K12]
Length = 551
Score = 118 bits (293), Expect = 9e-26
Identities = 84/252 (33%), Positives = 134/252 (52%), Gaps = 32/252 (12%)
Query: 83 ENLKEVIENLEEKIGEVKLG------DLGEV----NELVSRLNNENVKIAEVNDYIQTLS 132
E+L+ + L +G+V+ G E+ N+L SR + + E ++ L+
Sbjct: 254 ESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLT 313
Query: 133 AGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSK 192
A +++ A+Q S AL ++ A++G ++ DNV +T R++S + S+
Sbjct: 314 ATVKQNAENARQASHLALSASETAQRGGKVVDNVV-------QTMRDISTS-------SQ 359
Query: 193 KINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRN 252
KI DI+ VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A EI++
Sbjct: 360 KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKS 419
Query: 253 LIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDE 312
LIE+ + + + E E + +++A + E A+ E S GID+
Sbjct: 420 LIEDS-------VGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQ 472
Query: 313 QANSVQMLVDRI 324
+V + DR+
Sbjct: 473 VGLAVAEM-DRV 483
>gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium sp. NRC-1]
Length = 627
Score = 118 bits (293), Expect = 9e-26
Identities = 79/261 (30%), Positives = 133/261 (50%), Gaps = 16/261 (6%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V E+ N + ++ + + T+SA +EE+ A ++ A +A E GR +
Sbjct: 281 VTEIADGANQQTNQLNNIAAEMDTVSATVEEIAASANDVAKTAQAAADRGEDGRGEVEET 340
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
+ + E S+ +++ V LA ++I+ I +I IA +TN+LALNASIEAAR G G
Sbjct: 341 IEALRALREQSQAVAETVESLAAEVERIDGITALIEDIAEETNMLALNASIEAARTGSDG 400
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LA+ +++ A +I +++ + E AI E V EV+ I
Sbjct: 401 DGFAVVADEVKDLAEETREQAADISEIVDAVTEKAEDASIAIGE---VDAEVERKITKAE 457
Query: 287 AAFDDIARRANETANM---VKELSEGIDEQANSVQMLVDRIDSI----------SKDVSD 333
D +E AN+ V+E+S+ D+ A SV +V ++ + S V+D
Sbjct: 458 GVLRDFEAIVDEVANVNHAVQEISDATDQGAQSVTDVVGMVEEVASVSEETAAESDTVAD 517
Query: 334 NLNFATQLTDTISGSLEKLNE 354
N T TD ++ +++L E
Sbjct: 518 NAAEQTDATDEVADQMDELAE 538
>sp|P29486|TCPI_VIBCH TOXIN CORREGULATED PILUS BIOSYNTHESIS PROTEIN I (TCP PILUS
BIOSYNTHESIS PROTEIN TCPI) >gi|409772|gb|AAA21729.1|
(L25659) toxin co-regulated pilus [Vibrio cholerae]
Length = 620
Score = 117 bits (291), Expect = 2e-25
Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 30/334 (8%)
Query: 53 LSKEDEEV--LKKVAFRLKRGQGKK---INVKDKIENLKEVIENLEEKIGEVKLGDLGEV 107
LSKE V +++ L GQ K+ I ++++ + + +ENL+ ++ +V +
Sbjct: 286 LSKELSGVRQIREWILSLSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTM 345
Query: 108 NELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAE---------- 157
N+L + + I + Q IE++ QLS + + A+
Sbjct: 346 NDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQ 405
Query: 158 ----KGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLAL 213
+ I D+ + + ++ + E + L E+S I+ + VI++I+ QTNLLAL
Sbjct: 406 KLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLAL 465
Query: 214 NASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVR 273
NA+IEAARAGE GRGFAVVA+ VR LA ++++S +I+ +I ++QE Q + NV
Sbjct: 466 NAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRNVS 525
Query: 274 VTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSD 333
+ E + A + LIA+F+ I+ + E +N+ +S +EQ + + +++ I V +
Sbjct: 526 LIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQE 585
Query: 334 NLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
NL+ ++E+ + + I+ L N++
Sbjct: 586 NLS-----------AMERTKQANQNISDLTTNLN 608
>pir||C82314 methyl-accepting chemotaxis protein VC0512 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654939|gb|AAF93682.1| (AE004137) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 529
Score = 117 bits (291), Expect = 2e-25
Identities = 71/261 (27%), Positives = 133/261 (50%), Gaps = 10/261 (3%)
Query: 108 NELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEK-------GR 160
N+L+ + N+ +E + ++ I EM Q+++ A +A+ +E G+
Sbjct: 263 NDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVATGAKHAANSSESANHETISGQ 322
Query: 161 QISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAA 220
QI + ++ + + + L E+S I+ ++ VI SIA QTNLLALNA+IEAA
Sbjct: 323 QIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAA 382
Query: 221 RAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKE 280
RAGE+GRGFAVVA+ VR LA R+++S +I+ +I+ +Q + ++ + + E
Sbjct: 383 RAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVE 442
Query: 281 AIQNLIAAFDDIARRANETANMVKELSEGIDEQ---ANSVQMLVDRIDSISKDVSDNLNF 337
Q A I +R ++ M +++ +D+Q ++ + + I + DN
Sbjct: 443 QAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEINHSISNIRMAADTNVDNGKI 502
Query: 338 ATQLTDTISGSLEKLNEVKEE 358
+ + ++G L+E+ ++
Sbjct: 503 NAKCAEGVAGLSHNLSELAQQ 523
>pir||D82274 toxin co-regulated pilus biosynthesis protein I VC0825 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655276|gb|AAF93988.1| (AE004168) toxin co-regulated
pilus biosynthesis protein I [Vibrio cholerae]
Length = 620
Score = 117 bits (291), Expect = 2e-25
Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 30/334 (8%)
Query: 53 LSKEDEEV--LKKVAFRLKRGQGKK---INVKDKIENLKEVIENLEEKIGEVKLGDLGEV 107
LSKE V +++ L GQ K+ I ++++ + + +ENL+ ++ +V +
Sbjct: 286 LSKELSGVRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTM 345
Query: 108 NELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAE---------- 157
N+L + + I + Q IE++ QLS + + A+
Sbjct: 346 NDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQ 405
Query: 158 ----KGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLAL 213
+ I D+ + + ++ + E + L E+S I+ + VI++I+ QTNLLAL
Sbjct: 406 KLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLAL 465
Query: 214 NASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVR 273
NA+IEAARAGE GRGFAVVA+ VR LA ++++S +I+ +I ++QE Q + NV
Sbjct: 466 NAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRNVS 525
Query: 274 VTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSD 333
+ E + A + LIA+F+ I+ + E +N+ +S +EQ + + +++ I V +
Sbjct: 526 LIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQE 585
Query: 334 NLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
NL+ ++E+ + + I+ L N++
Sbjct: 586 NLS-----------AMERTKQANQNISDLTTNLN 608
>pir||C83440 probable chemotaxis transducer PA1646 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947615|gb|AAG05035.1|AE004592_6 (AE004592) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 652
Score = 117 bits (291), Expect = 2e-25
Identities = 76/280 (27%), Positives = 153/280 (54%), Gaps = 9/280 (3%)
Query: 84 NLKEVIENLEEKIGEVKLGDLGEVNELVSR----LNNENVKIAEVNDYIQTLSAGIEEMN 139
+L+ ++ L++ +G + G ++ + +R ++++ + +V + ++A + E+
Sbjct: 369 SLRGIVSQLQDGVGRIA-GASEALSGVTTRTRLGIDSQRAETEQVATAMNQMAATVHEVA 427
Query: 140 VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVY 199
A++ + A + G+++ ++ R++E R + +V L+ S++I ++
Sbjct: 428 HNAEEAAGAAESADGKVSVGQEVVRQTLERIERLAEAVRAATASVEALSADSQRIGSVLD 487
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQE 259
VI S+A QTNLLALNA+IEAARAG+ GRGFAVVA+ VR LA R+++S EI LI +Q
Sbjct: 488 VIKSVAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTQQSTAEIETLIGALQN 547
Query: 260 NINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQM 319
+ +Q +Q + ++ ++ + AA +IA M ++++ EQ ++V
Sbjct: 548 GTQQAVQRMQRSHQLVDQSVDDALQTEAALGNIATAVALIQQMNQQIA-AASEQQSAVAE 606
Query: 320 LVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEI 359
++R + ++V+D + Q + + S E+L E+ E+
Sbjct: 607 EINRSVTAIREVADQ---SAQAMQSTASSSEQLAELGREL 643
>pir||T44973 transducer protein htpIII [similarity] - Halobacterium salinarum
>gi|1654419|gb|AAB17880.1| (U75435) transducer HtA
protein [Halobacterium salinarum]
Length = 482
Score = 117 bits (290), Expect = 2e-25
Identities = 78/286 (27%), Positives = 150/286 (52%), Gaps = 17/286 (5%)
Query: 81 KIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNV 140
++ N E +E + + E E++EL + ++ ++ V ++TLSA ++E+
Sbjct: 204 EVHNDVERLEAASQAVSESS----AEIDELSTA---QSTNVSTVATEVETLSATVQEIAS 256
Query: 141 QAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYV 200
A ++ D + + +A+ G + + A ++ ++ + ++ V L + I+++V V
Sbjct: 257 TADEVVDTSATAERLADDGSAAASDAADMMADVATAADSVTSDVEALQNRIEDIDEVVDV 316
Query: 201 ISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQEN 260
I+ IA QTN+LALNASIEAA GE G GFAVVAE V+ LA+ ++ +A I +L+ E+Q +
Sbjct: 317 ITGIAEQTNMLALNASIEAAPPGEEGEGFAVVAEEVKALAEDAQSNAGHIESLVSEIQRD 376
Query: 261 INRVIQAIQENVRVTEEVKEA---IQNLIAAFDDIARRANETA----NMVKELSEGIDEQ 313
+ + V T+ +++A +++ +A+F++I TA NMV + +
Sbjct: 377 ---TADTVTDLVTTTDRIEDAVAQVEDAMASFEEIVTAVEATAERASNMVSDATNEQAAS 433
Query: 314 ANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEI 359
A + +VD ++ D++ + T+ S L L+E E+
Sbjct: 434 AEEIAAMVDETADLADDITTAVADIVSQTEAQSAMLHDLDESVSEL 479
>pir||C83490 probable chemotaxis transducer PA1251 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947182|gb|AAG04640.1|AE004554_8 (AE004554) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 117 bits (290), Expect = 2e-25
Identities = 83/309 (26%), Positives = 151/309 (48%), Gaps = 20/309 (6%)
Query: 71 GQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQT 130
G + + + +++ + + E+IG+ +L + N +A ND I+
Sbjct: 241 GDDEPAQLMKAMRSMQASLHDTIEQIGDSAALLAAAAEQLNAVTEEGNRSLARQNDEIEM 300
Query: 131 LSAGIEEMNVQAQQLSDFALESASMAEKGRQISDN----VALKVSRISETSREMSDAVRI 186
+ + EM+ ++++ A +A + + + N V V I + + E+ R+
Sbjct: 301 AATAVNEMSAAVEEVARNASSTAEASSLSERAAGNGRARVGQTVRSIRQMNAEIGQTARL 360
Query: 187 ---LAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRS 243
LA ++ I ++ VI +IA QTNLLALNA+IEAARAGE GRGFAVVAE VR LA R+
Sbjct: 361 VEGLASQAQDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVAEEVRALAHRT 420
Query: 244 KKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMV 303
++S EI +I ++E + + A++EN + ++ + + A +IA A
Sbjct: 421 QQSTHEIEGMIASVREGTDTAVSAMRENDQRARQMLDEAEAADHALGEIAEHATRINERT 480
Query: 304 KELSEGIDEQANSVQMLVDRIDSISKDVSDNL-NFATQLTDTISGSLEKLNEVKEEITKL 362
++ +EQA+ ++++V NL N T G+ E+ E+++L
Sbjct: 481 LVIASAAEEQAH-----------VAREVDHNLVNIRDVAVQTTQGA-EQTRGASHELSRL 528
Query: 363 KENIDRIMG 371
++ ++G
Sbjct: 529 ANDLKGMIG 537
>gb|AAB50497.1| (U30319) DcrH [Desulfovibrio vulgaris]
Length = 959
Score = 116 bits (289), Expect = 3e-25
Identities = 87/330 (26%), Positives = 167/330 (50%), Gaps = 20/330 (6%)
Query: 40 DVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEV 99
+ D + PL ++ E +K + R+ G K +V E++ I +L ++ +
Sbjct: 505 EAADSAQAHRPLDKARASETRIKGLMERMTGGGSKARSVS---EHVSRSINDLTAQVHTI 561
Query: 100 KLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKG 159
+ V + A+ D ++T+ + + + N +A + +D + S A +
Sbjct: 562 --------TQAVETQRHRMDDTAQAMDTMRTMVSDVAD-NWRAAEQADLSRGHGSRAPRE 612
Query: 160 RQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEA 219
+ ++ E ++ A+ L E + I ++ VIS IA QTNLLALNA+IEA
Sbjct: 613 WA----AVASIGQVRERIERLNTAMARLGEEADSIGKVMSVISDIADQTNLLALNAAIEA 668
Query: 220 ARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVK 279
ARAG+AGRGFAVVA+ VR+LA+++ ++ E+ + + +Q + I A++ +R
Sbjct: 669 ARAGDAGRGFAVVADEVRKLAEKTMQATGEVGSAVTRIQTHTRDNIAAVETAMRERTASA 728
Query: 280 EAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQML---VDRIDSISKDVSDNLN 336
+A + DDI R +ETA MV+ ++ D+QA + M+ V+ +++I+ D + +++
Sbjct: 729 DATAS-GRVMDDIVSRVDETAGMVQSIAAASDQQAAAATMVGRNVEEVNAIAGDTAASMS 787
Query: 337 FATQLTDTISGSLEKLNEVKEEITKLKENI 366
+ I +++L + E I+ +E +
Sbjct: 788 HFAGTLEDIFSQVQELFSMIEVISTGEEGV 817
>pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 - Synechocystis
sp. (strain PCC 6803) >gi|1652276|dbj|BAA17199.1|
(D90904) methyl-accepting chemotaxis protein (MCP)
[Synechocystis sp.]
Length = 953
Score = 116 bits (289), Expect = 3e-25
Identities = 74/265 (27%), Positives = 135/265 (50%), Gaps = 4/265 (1%)
Query: 85 LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQ 144
+K+V++ E G+ + D E+ L + + + ++ IE + + AQ
Sbjct: 674 VKQVVDTATEVSGQAQ-EDSQEITSLSDNALEQARALEFATASVAEMAQSIESVAISAQT 732
Query: 145 LSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSI 204
+ A + A++G+ D + ++ E+S + LAE S +I+ IV +IS I
Sbjct: 733 AAAIAKQGNEAAQQGQNTMDETVESIYKVRGRVAEISKKSKRLAESSLEISKIVGIISGI 792
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV 264
+ +TNLLA NASIEAARAGE G+GF +VA+ VR LA+ SA+EI +I +QE +++
Sbjct: 793 SEKTNLLAFNASIEAARAGENGQGFRIVADEVRRLAEMVTLSAQEIEQVILSIQEETSQM 852
Query: 265 IQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQML---V 321
Q ++E+ + +Q ++A+ + E ++ +S + Q + QM+ V
Sbjct: 853 SQLMEESTNEVVTGTQLVQKTKETLQNLAQISEEIDTVLDSISRNTESQRLASQMVTETV 912
Query: 322 DRIDSISKDVSDNLNFATQLTDTIS 346
+ S++K SD +Q +++
Sbjct: 913 QNVASVAKATSDKSQLVSQSLQSLA 937
>sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MCP-III) (RIBOSE AND
GALACTOSE CHEMORECEPTOR PROTEIN) >gi|7428893|pir||QREC3M
methyl-accepting chemotaxis protein III - Escherichia
coli >gi|1742320|dbj|BAA15044.1| (D90781)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1742331|dbj|BAA15053.1| (D90782)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1787690|gb|AAC74503.1| (AE000239)
methyl-accepting chemotaxis protein III, ribose sensor
receptor [Escherichia coli K12]
>gi|4481751|gb|AAA81329.2| (K02073) Trg sensory
transducer protein [Escherichia coli]
Length = 546
Score = 116 bits (289), Expect = 3e-25
Identities = 76/268 (28%), Positives = 141/268 (52%), Gaps = 2/268 (0%)
Query: 79 KDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE-NVKIAEVNDYIQTLSAGIEE 137
+++I L ++ ++ +G + +G + + E + R +E + A+++ + +A IE+
Sbjct: 254 RNEIGRLSRHLQQMQHSLG-MTVGTVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQ 312
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDI 197
+QL+ ++A A +++ ++K S +T + + ++ SKKI++I
Sbjct: 313 TAASMEQLTATVKQNADNAHHASKLAQEASIKASDGGQTVSGVVKTMGAISTSSKKISEI 372
Query: 198 VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEM 257
VI+SIA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI LI E
Sbjct: 373 TAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLISES 432
Query: 258 QENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
I+ + + + +A+ ++ +IA ++E + + ++S+ I E
Sbjct: 433 VRLIDLGSDEVATAGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVT 492
Query: 318 QMLVDRIDSISKDVSDNLNFATQLTDTI 345
Q ++ S A +LT+ +
Sbjct: 493 QQNASLVEEASAAAVSLEEQAARLTEAV 520
>gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 715
Score = 116 bits (288), Expect = 4e-25
Identities = 87/281 (30%), Positives = 140/281 (48%), Gaps = 30/281 (10%)
Query: 48 QIPLGLSKEDEEVLKKVAFRLKRGQ--GKKINVKDKIEN----LKEVIENLEEKIGEVKL 101
QI +GL + L K ++ G+ + + ++D N L+E ++ + +G ++
Sbjct: 408 QISVGL-----DALSKGDLTVRVGEVDHRYVRIRDHFNNSVASLEEAVDAVIRAVGTIRS 462
Query: 102 GDLGEV----NELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAE 157
G L E+ N+L R + + E + ++ G+ A + + + AE
Sbjct: 463 G-LAEISTASNDLARRTEQQAASLEETVAALGEVTRGVNGTAEGASRAQGVVATARTNAE 521
Query: 158 KGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASI 217
KG +I V+R + E+ ++ S KI +I+ VI IA QTNLLALNA +
Sbjct: 522 KGGEI-------VARAIDAMTEIQNS-------SSKIGNIISVIDEIAFQTNLLALNAGV 567
Query: 218 EAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEE 277
EAARAGEAG+GFAVVA+ VRELA RS +A EI+ LI + +Q + E+ E+
Sbjct: 568 EAARAGEAGKGFAVVAQEVRELAQRSANAAREIKQLISTSSAQVKTGVQLVGESGLSLEQ 627
Query: 278 VKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
+ E + + A +IA A E A ++E+S D+ Q
Sbjct: 628 IVEQVTAMNATVAEIAVAAREQATSLREVSAAGDQMDKVTQ 668
>emb|CAB99193.1| (AJ293587) hypothetical protein [Pseudomonas putida]
Length = 326
Score = 116 bits (288), Expect = 4e-25
Identities = 77/288 (26%), Positives = 146/288 (49%), Gaps = 21/288 (7%)
Query: 85 LKEVIENLEEKIGEVKLG---------DLGEVNELVSR-LNNENVKIAEVNDYIQTLSAG 134
L ++ +NL + IG++ ++ + + S+ L + +I + + +SA
Sbjct: 37 LGKMQKNLRKTIGQISDSSTQLSGAAVEMTAITDAASKTLRQQKNEIEQAATAVNEMSAA 96
Query: 135 IEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKI 194
+EEM A S+ A +S+ A+ G Q + +S ++ ++ ++ LA ++ I
Sbjct: 97 VEEMAQNATSTSEAARQSSDFAKLGNQCVNETLKAISELTGQVELTAEQIQHLAGQTQDI 156
Query: 195 NDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLI 254
+ ++ VI +IA QTNLLALNA+IEAARAGE GRGFAVVA+ +R LA ++ S +EI +I
Sbjct: 157 SKVLSVIRAIAQQTNLLALNAAIEAARAGEQGRGFAVVADQIRALAHLTQGSTKEIEEMI 216
Query: 255 EEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQA 314
+Q+ + + ++Q + + E K+A + + + I + +++ +EQA
Sbjct: 217 TSIQQQSSLAVVSMQFSATLAHETKKAAEKAGRSLESITNAVRLIDDRNLQIATASEEQA 276
Query: 315 NSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKL 362
S++++V NL L+ + + EE+++L
Sbjct: 277 -----------SVAREVDSNLTSIRHLSMQSDNGTHQTLQASEELSRL 313
>pir||F82383 methyl-accepting chemotaxis protein VCA1056 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658501|gb|AAF96950.1| (AE004431) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 770
Score = 116 bits (288), Expect = 4e-25
Identities = 81/328 (24%), Positives = 161/328 (48%), Gaps = 18/328 (5%)
Query: 45 KEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDL 104
++ + + LS++ + ++++A L R +++D I + L +
Sbjct: 458 RDNDLTVRLSEQGSDEIRQLAQALNRMLS---HLQDTICQFAHTTDKLNSHTQTITHNMT 514
Query: 105 GEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISD 164
G N + + + + VN+ +SA I E++ AQ+ + F E+ G + +
Sbjct: 515 GTRNSVSEQHERTDSVVTAVNE----MSASITEVSEFAQRAATFVQEANQKGHGGVSVGN 570
Query: 165 NVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGE 224
+A ++ I++ +A+ L S+ I ++ VI +IA QTNLLALNA+IEAARAGE
Sbjct: 571 ELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGE 630
Query: 225 AGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQN 284
GRGFAVVA+ VR LA +++ S EEIR I+ +Q+ V+ I EE +
Sbjct: 631 QGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCI-------EEANNTVVR 683
Query: 285 LIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDT 344
+A + +M+ EL +E + ++ ++++++ N+ + ++ +
Sbjct: 684 GVATCHSNTDMLKQIVDMLNEL----NEMNIQIATATEQQRGVTEEINANITSISDVSAS 739
Query: 345 ISGSLEKLNEVKEEITKLKENIDRIMGE 372
++ + ++N + E++ + + MG+
Sbjct: 740 VTVQVGEVNAIVNELSDEAMELSKRMGQ 767
>pir||E83041 probable chemotaxis transducer PA4844 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951114|gb|AAG08229.1|AE004897_7 (AE004897) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 657
Score = 116 bits (288), Expect = 4e-25
Identities = 78/266 (29%), Positives = 133/266 (49%), Gaps = 7/266 (2%)
Query: 77 NVKDKIENLKEVIENLEEKI---GEVKLGDLGEVNELVSRLN----NENVKIAEVNDYIQ 129
N++D + L+ + L I E G + E+ S L+ + ++ D +
Sbjct: 363 NLEDSLNRLRSFLAELVGAIHRRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDALG 422
Query: 130 TLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAE 189
+ A I+++ A Q +D + + E G+++ + + + + + ++ LAE
Sbjct: 423 DMEAAIQQVAGDASQTADASRSAGQAVEHGQRVIGESLGGLRELVDEVQGNAQSIERLAE 482
Query: 190 YSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEE 249
S I ++ VI SIA QTNLLALNA+IEAARAG+ GRGFAVVAE VR LA R+ + EE
Sbjct: 483 ESATIGSVLTVIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVAEEVRSLAQRTAGATEE 542
Query: 250 IRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEG 309
I+ LI +Q+ + ++A++ V E E A D++ + M + ++EG
Sbjct: 543 IQQLIGRLQQAARQSVEAMRSQVEHAERTAEQAGAAEGALDEVVAAIHTIGVMAERIAEG 602
Query: 310 IDEQANSVQMLVDRIDSISKDVSDNL 335
+Q+ +V + + I +NL
Sbjct: 603 STQQSQAVGEIRSHSERIHALGGENL 628
>pir||JQ1475 probable methyl-accepting chemotaxis protein - Escherichia coli
transposon Tn1721 >gi|48195|emb|CAA43639.1| (X61367)
product exhibits features of a methyl-accepting
chemotaxis protein [Escherichia coli]
Length = 525
Score = 116 bits (287), Expect = 5e-25
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 13/256 (5%)
Query: 101 LGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGR 160
L D+ N L E +IA + + A I+E+ AQ +D A + + G+
Sbjct: 262 LKDIESSNVLTVEQQAETDQIATA---VNQMVASIQEVASNAQHAADAAGRADTETASGQ 318
Query: 161 QISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAA 220
++ + + ++ + R+ + + L S +I+ ++ VI IA QTNLLALNA+IEAA
Sbjct: 319 RLVAHTSQSITALEGEIRQATQVIHELEGQSNEISKVLDVIRGIAEQTNLLALNAAIEAA 378
Query: 221 RAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKE 280
RAGE GRGFAVVA+ VR LA R+++S +I+++I +QE + ++++ R
Sbjct: 379 RAGEQGRGFAVVADEVRSLAARTQQSTTDIQSMISALQERAQSAVTVMEQSSRQAHTSVA 438
Query: 281 AIQNLIAAFDDIARRANETANMVKELSEGIDEQA-------NSVQMLVDRIDSISKDVSD 333
+ A D I +R NE +M +++ +++Q S+ + D D+ + +
Sbjct: 439 HAEEAATALDGIGQRVNEITDMNAQIATAVEQQGAVSEDINRSIINIRDAADTNVQTGQN 498
Query: 334 NLNFA---TQLTDTIS 346
NL A QLT +S
Sbjct: 499 NLQSAKSVAQLTSALS 514
>sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|477735|pir||B47704 probable
sensory transducer protein - Clostridium thermocellum
>gi|144913|gb|AAA20891.1| (L04736) sensory transducer
protein [Clostridium thermocellum]
Length = 557
Score = 116 bits (287), Expect = 5e-25
Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 39/283 (13%)
Query: 75 KINVKDKI----ENLKEVIENLEEKIGEVKLGDLGEVN--------------ELVSRLNN 116
K +D+I E+ K +IEN+ E+ V+ G++ +L ++
Sbjct: 173 KAETRDEIGKLAESFKRMIENIREQAYVVERIAAGDMTVDVRVKSDKDLLGKKLKEMVDT 232
Query: 117 ENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEK----------GRQISDNV 166
N ++ +N+ ++AG ++++ + QLS A E AS E+ Q+S
Sbjct: 233 NNEVLSNINEVAAQVAAGAKQVSDSSMQLSQGATEQASSIEELTASLEQVANQTQLSAKN 292
Query: 167 ALKVSRISETSR-----------EMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNA 215
A + + ++E ++ EM +A+ + S I+ I+ VI IA QTN+LALNA
Sbjct: 293 ANQANELAEVAKNNAEQGNKQMAEMLNAMEEINNSSSNISRIIKVIDEIAFQTNILALNA 352
Query: 216 SIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVT 275
++EAARAG+ G+GFAVVAE VR LA RS +A+E LIE + + +E
Sbjct: 353 AVEAARAGQHGKGFAVVAEEVRNLAARSANAAKETTELIEGTIKRTENGTKIARETAEAL 412
Query: 276 EEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ 318
++ E I +DIA +NE A + ++++GI + + VQ
Sbjct: 413 NKIVEGISKAATLVNDIAVASNEQAAAITQINQGIAQVSQVVQ 455
>gb|AAF61289.1|AF064528_2 (AF064528) phototransducer; methyl-accepting chemotaxis protein;
Ptr [Rhodospirillum centenum (Rhodocista centenaria)]
Length = 671
Score = 116 bits (287), Expect = 5e-25
Identities = 88/332 (26%), Positives = 160/332 (47%), Gaps = 23/332 (6%)
Query: 17 VSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKI 76
+SG+K + + +A+ + +++ + +I +K+ E +K A + +
Sbjct: 346 ISGQKRKDEIGEM-GRAVAVFRDGLIERQRLRIEQDRAKQRAEEERKAALT-RLADSFEA 403
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
V+ + + + ++++ GE+ + S+ + ++ +QT++A E
Sbjct: 404 GVRGVVTEVSGMAHHIQDNAGELSAA----ARQTSSQAEVVAAASGQASNNVQTVAASAE 459
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
E+ SAS+AE GRQ+ + + + + ++ ++ V LA + I
Sbjct: 460 EL-------------SASIAEIGRQVQRS-SERAQAATGMAQGANEQVEALAAQADAIGS 505
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
+V +IS IA+QTNLLALNA+IEAARAGEAG+GFAVVA V+ LA ++ ++ E+I I
Sbjct: 506 VVQLISEIAAQTNLLALNATIEAARAGEAGKGFAVVAGEVKSLASQTARATEDIGRQIAR 565
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEG---IDEQ 313
MQ+ + + AI+ + E+ E + AA A E + V++ + G ID
Sbjct: 566 MQQASHGTVSAIRGIAGMITEMNEIAAGIAAAVQQQAAATGEISRSVQQAASGTEEIDRS 625
Query: 314 ANSVQMLVDRIDSISKDVSDNLNFATQLTDTI 345
V+ DR S D+ D + DT+
Sbjct: 626 IGDVRSAADRTGRASADLLDAARLLSSQADTL 657
>pir||A82320 methyl-accepting chemotaxis protein VC0449 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654874|gb|AAF93622.1| (AE004132) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 541
Score = 116 bits (287), Expect = 5e-25
Identities = 83/249 (33%), Positives = 135/249 (53%), Gaps = 19/249 (7%)
Query: 121 IAEVNDYIQTLSAGIE----EMNVQAQQLSDFALESASMAEKGRQISDN----VALKVSR 172
IAE+ D Q +A I EM A Q++D A ++A ++ Q S + + VS
Sbjct: 285 IAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSN 344
Query: 173 ISETSREMSDAVRILAEYS---KKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGF 229
I + ++ A +A+ K I ++ VI IA QTNLLALNA+IEAARAGE GRGF
Sbjct: 345 IQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGF 404
Query: 230 AVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAI-------QENVRVTEEVKEAI 282
AVVA+ VR LA R++ S +EI+ +I +QE IQ I Q +V+ +E A+
Sbjct: 405 AVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASAL 464
Query: 283 QNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLT 342
+++A + ++ +++ A E ++ D+ A + M+ + +S+ V ++ N +TQ
Sbjct: 465 ALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHN-STQTL 523
Query: 343 DTISGSLEK 351
++ LE+
Sbjct: 524 TKLARELEQ 532
>pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656156|gb|AAF94794.1| (AE004242) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 596
Score = 115 bits (286), Expect = 6e-25
Identities = 77/295 (26%), Positives = 153/295 (51%), Gaps = 24/295 (8%)
Query: 82 IENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQ 141
+ + +EVI + + L E N V+ +N I E Q ++A I +
Sbjct: 311 VTSFQEVISSNRHSVSA--LATAAEENAAVAMQTKQN--IVEQQSQTQQIAAAIHQFTAT 366
Query: 142 AQQLSDFALESASMAEKGRQ--------ISDNVALKVSRISETSREMSDAVRILAEYSKK 193
+++ A +A +E+ Q + +N+A+ + +S ++M A+++LA+ S+
Sbjct: 367 VHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAM-IEGLSNDLQKMLAAMQLLAKDSED 425
Query: 194 INDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNL 253
I +V VI SI+ QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R+++S ++I
Sbjct: 426 IGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQT 485
Query: 254 IEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQ 313
++ +Q++ I++ V + E + A I + + M +++ +EQ
Sbjct: 486 VQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNTQIATASEEQ 545
Query: 314 ANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDR 368
+ +++++++ N+ +++++ + ++ +E E+ +L E++ +
Sbjct: 546 S-----------AVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQ 589
>pir||H82143 methyl-accepting chemotaxis protein VC1898 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656431|gb|AAF95046.1| (AE004265) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 672
Score = 115 bits (286), Expect = 6e-25
Identities = 74/252 (29%), Positives = 130/252 (51%)
Query: 112 SRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVS 171
++LN++ + + V + ++ ++E+ AQ + + +E GRQI +
Sbjct: 420 NKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIR 479
Query: 172 RISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAV 231
++ E +AV L + S +I I+ VI +IA QTNLLALNA+IEAARAGE GRGFAV
Sbjct: 480 QLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAV 539
Query: 232 VAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDD 291
VA+ VR LA R+ +S EI ++I +Q + + + I+ ++ E E + +A ++
Sbjct: 540 VADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEE 599
Query: 292 IARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEK 351
I E ++M +S+ EQ + + I+ I+ ++ +Q+ T +
Sbjct: 600 IQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTAL 659
Query: 352 LNEVKEEITKLK 363
N+ E + + K
Sbjct: 660 ANQQSELVHRFK 671
>pir||A82513 methyl-accepting chemotaxis protein VCA0008 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657386|gb|AAF95922.1| (AE004344) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 553
Score = 115 bits (286), Expect = 6e-25
Identities = 84/286 (29%), Positives = 152/286 (52%), Gaps = 24/286 (8%)
Query: 87 EVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLS 146
E ++N+ +++ +V + E N + R + + + + ++ + EM AQ++S
Sbjct: 269 ESLQNIIKRVNQVGQQVVEETNAMSQRATQVDHLASNQREETEQVATAMTEMTTTAQEIS 328
Query: 147 DFA---LESASMAEKGRQISDNVALKVSR-ISETSREMSDAVRILAEYSKKINDI---VY 199
+ A +SA AE N+ +R + + E++DA ++A+ +N+I +
Sbjct: 329 NNANNAAQSAKDAEDNATDVHNIVNAAARSVQALAEEVADASSVIAKLEGDVNNITSSLA 388
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQE 259
VI IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR+LA R+++S ++I +I++++
Sbjct: 389 VIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASRTQESTQQIHTMIQQLKA 448
Query: 260 NINRVIQAIQEN-------VRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDE 312
+ ++A++ + VR EA+Q + A+ I +M ++ +E
Sbjct: 449 GSDAAVKAMESSQQRSITTVREANAAAEALQKIQASIGTI-------MDMNALIATATEE 501
Query: 313 QANSVQMLVDRIDSISKDVSDNLNFATQL---TDTISGSLEKLNEV 355
Q+ Q + RI IS S++ + A Q + T++G +L E+
Sbjct: 502 QSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGRAHELYEL 547
>sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >gi|7475621|pir||A69656
methyl-accepting chemotaxis protein mcpC - Bacillus
subtilis >gi|1280446|emb|CAA66052.1| (X97385)
methyl-accepting chemotaxis protein [Bacillus subtilis]
>gi|2633766|emb|CAB13268.1| (Z99111) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 654
Score = 115 bits (285), Expect = 8e-25
Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 7/315 (2%)
Query: 59 EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNEN 118
E +K++ +++ GK V D E L V E+ G++ + E+ + + +
Sbjct: 342 ENMKEMVEQVRLSSGK---VSDTSEQLTAVAAETNERSGQIAKA----IEEVAAGASEQA 394
Query: 119 VKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSR 178
++ +N+ ++LS I ++ +A + + + S + KG + +K + + ++
Sbjct: 395 SEVETINEKSESLSTKIRQIAEEAGGIKERSKSSEDASYKGLHALGQLLMKSNEANMETK 454
Query: 179 EMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRE 238
+ + L +K I ++V IS+I+ QTNLLALN SIEAARAGE+GRGFAVVA+ VR+
Sbjct: 455 KEETMLLDLENQTKNIEEVVTAISNISDQTNLLALNRSIEAARAGESGRGFAVVADEVRK 514
Query: 239 LADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANE 298
LA++S S + I ++ +Q A+ E R+ +E AI + I
Sbjct: 515 LAEQSALSTKHISETVKLIQLETKEASHAMVEASRMNDEQNSAIHETGEVLNTITAEMQS 574
Query: 299 TANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEE 358
+ + I + + + I SIS ++ A ++ + L L++VK
Sbjct: 575 LVQGIDHIYAEIQRMSEEQLAISEAIQSISAISQESAAAAEEVNASTDEQLVTLDKVKHS 634
Query: 359 ITKLKENIDRIMGEI 373
LK ++ I
Sbjct: 635 TETLKHASQDVINTI 649
>pir||H83445 probable chemotaxis transducer PA1608 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947573|gb|AAG04997.1|AE004588_10 (AE004588)
probable chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 115 bits (285), Expect = 8e-25
Identities = 84/251 (33%), Positives = 126/251 (49%), Gaps = 2/251 (0%)
Query: 103 DLGEVNELVSR-LNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQ 161
+L V E +R L +N +I + ++A +EE+ A SD + S A+ GRQ
Sbjct: 279 ELSAVTEQGNRSLTQQNDEIQMAATAVNEMTAAVEEVARNASSTSDASSASEQSAQNGRQ 338
Query: 162 ISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAAR 221
+ +SE S V LAE ++ I+ ++ VI IA QTNLLALNA+IEAAR
Sbjct: 339 RVLETVQAIRLMSEEVDNTSALVGGLAEKAQDISKVLDVIRGIAEQTNLLALNAAIEAAR 398
Query: 222 AGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEA 281
AGE GRGFAVVA+ VR LA R+++S EI +I +QE + A+ + + E
Sbjct: 399 AGEQGRGFAVVADEVRALAHRTQESTREIEQMIANIQEGTGAAVGAMDSSSVRARNMLEI 458
Query: 282 IQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQL 341
+ A ++IA R + ++ ++QA V VDR +D+S + +
Sbjct: 459 AEAAGLALNEIAERVGQINERTLVIASASEQQA-QVAREVDRNLVNIRDISLQTSAGSNQ 517
Query: 342 TDTISGSLEKL 352
T S L +L
Sbjct: 518 TAAASQELSQL 528
>pir||T44597 transducer protein htpVI [similarity] - Halobacterium salinarum
>gi|1654425|gb|AAB17883.1| (U75438) transducer HtD
protein [Halobacterium salinarum]
Length = 777
Score = 115 bits (284), Expect = 1e-24
Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 6/262 (2%)
Query: 107 VNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNV 166
V + R ++ ++ V +SA IEE+ A Q+++ + +A++ + G+ + +
Sbjct: 498 VGRIRDRAADQRDQLEAVASETDEMSATIEEVARVAGQVAETSQRAAALGDDGQAAAQDA 557
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
++ I + ++ + AV L +I IV I+ IA QTN+LALNA+IEAARA + G
Sbjct: 558 VAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAITDIAEQTNMLALNANIEAARADQDG 617
Query: 227 RGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
GFAVVA+ V++LAD SK A E++ L+ E++ + A+ R+ E V + ++ +
Sbjct: 618 DGFAVVADEVKDLADESKALAAEMQALVAEVRAQTETSVAAMD---RIQERVSDGVETVS 674
Query: 287 ---AAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTD 343
+ DIA R E V+E+S +D+QA SV + + ++ + A D
Sbjct: 675 ETERSLSDIAGRIAEPDTGVQEISNAMDDQAASVSDVTTAVGDVAALGEETATEAESTRD 734
Query: 344 TISGSLEKLNEVKEEITKLKEN 365
+ L++V + L E+
Sbjct: 735 AAAEQATTLSDVAAQTETLAEH 756
>gb|AAA23566.1| (M13463) methyl-accepting chemotaxis protein II [Escherichia coli]
Length = 553
Score = 114 bits (283), Expect = 1e-24
Identities = 81/248 (32%), Positives = 131/248 (52%), Gaps = 26/248 (10%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
++ D + +++E + + E+ G+ +L SR + + E ++ L+A ++
Sbjct: 260 SLTDTVTHVREGSDAIYAGTREIAAGN----TDLSSRTEQQASALEETAASMEQLTATVK 315
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
+ A+Q S A ++ A+ G ++ D V +T E++D+ SKKI D
Sbjct: 316 QNADNARQASQLAQSASDTAQHGGKVVDGVV-------KTMHEIADS-------SKKIAD 361
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
I+ VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE+
Sbjct: 362 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIED 421
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANS 316
+ + + E E + N++ A + E A+ E S GID+ A +
Sbjct: 422 S-------VSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALA 474
Query: 317 VQMLVDRI 324
V + DR+
Sbjct: 475 VSEM-DRV 481
>sp|P07017|MCP2_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP-II) (ASPARTATE
CHEMORECEPTOR PROTEIN) >gi|7428891|pir||QRECM4 aspartate
chemoreceptor protein - Escherichia coli
>gi|1736539|dbj|BAA15702.1| (D90830) Methyl-accepting
chemotaxis protein II (MCP-II) (Aspartate chemoreceptor
protein). [Escherichia coli] >gi|1736545|dbj|BAA15707.1|
(D90831) Methyl-accepting chemotaxis protein II (MCP-II)
(Aspartate chemoreceptor protein). [Escherichia coli]
>gi|1788195|gb|AAC74956.1| (AE000282) methyl-accepting
chemotaxis protein II, aspartate sensor receptor
[Escherichia coli K12]
Length = 553
Score = 114 bits (283), Expect = 1e-24
Identities = 81/248 (32%), Positives = 131/248 (52%), Gaps = 26/248 (10%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
++ D + +++E + + E+ G+ +L SR + + E ++ L+A ++
Sbjct: 260 SLTDTVTHVREGSDAIYAGTREIAAGN----TDLSSRTEQQASALEETAASMEQLTATVK 315
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
+ A+Q S A ++ A+ G ++ D V +T E++D+ SKKI D
Sbjct: 316 QNADNARQASQLAQSASDTAQHGGKVVDGVV-------KTMHEIADS-------SKKIAD 361
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
I+ VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE+
Sbjct: 362 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIED 421
Query: 257 MQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANS 316
+ + + E E + N++ A + E A+ E S GID+ A +
Sbjct: 422 S-------VSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALA 474
Query: 317 VQMLVDRI 324
V + DR+
Sbjct: 475 VSEM-DRV 481
>gb|AAC46420.1| (AF036168) putative methyl accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 625
Score = 114 bits (283), Expect = 1e-24
Identities = 66/247 (26%), Positives = 133/247 (53%), Gaps = 4/247 (1%)
Query: 104 LGEVNELVSRLNNENVKIA----EVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKG 159
+G V + V ++N +IA +++ + +A +EE ++++ + ++
Sbjct: 342 IGAVLQTVYSIDNGTGEIASAAQDLSKRTEQQAASLEETAAALEEITSNVTMATKRTDEA 401
Query: 160 RQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEA 219
R ++ + R + + A+R + + S++I++I+ I IA QTNLLALNA +EA
Sbjct: 402 RNVAKEADISAQRSAAVVSQAEGAMRRIEDSSQQISNIIGAIDEIAFQTNLLALNAGVEA 461
Query: 220 ARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVK 279
ARAGEAG+GFAVVA+ VRELA R+ ++A+EI+ I++ ++ ++ + E + +
Sbjct: 462 ARAGEAGKGFAVVAQEVRELAQRAAQAAKEIKGFIQKSSADVENGVKLVLETGTSLKSIG 521
Query: 280 EAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFAT 339
E + ++ D IA A E + + E++ +++ + Q ++ + V+ + A
Sbjct: 522 EYVVHINQLMDAIATSAREQSTGLAEINTAVNQMDQATQQNAAMVEQSTAAVASLSSEAG 581
Query: 340 QLTDTIS 346
+L D ++
Sbjct: 582 RLRDLVN 588
>pir||G82401 methyl-accepting chemotaxis protein VCA0923 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658359|gb|AAF96820.1| (AE004419) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 652
Score = 114 bits (283), Expect = 1e-24
Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 16/244 (6%)
Query: 128 IQTLSAGIEEMNVQAQQLSDFALESASMAE-------KGRQISDNVALKVSRISETSREM 180
++ L+ + EM + +++ A +AS A+ G + + +S T
Sbjct: 409 LEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAA 468
Query: 181 SDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELA 240
D V++L + I ++ VI+ IA QTNLLALNA+IEAARAGE+GRGFAVVA+ VR LA
Sbjct: 469 VDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLA 528
Query: 241 DRSKKSAEEIRNLIEEMQENINRVIQAIQEN-------VRVTEEVKEAIQNLIAAFDDIA 293
R+++S EIRN+IE++Q N V A+ + V + EA++ + A I+
Sbjct: 529 QRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQIS 588
Query: 294 RRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQL-TDTISGSLEKL 352
+ A+ +E S +E N+ + D D +++ +D N + Q+ T+ I L
Sbjct: 589 DMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVAES-ADEANMSMQIQTENIREQDAIL 647
Query: 353 NEVK 356
N+ K
Sbjct: 648 NKFK 651
>gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium sp. NRC-1]
Length = 628
Score = 114 bits (283), Expect = 1e-24
Identities = 67/279 (24%), Positives = 152/279 (54%), Gaps = 4/279 (1%)
Query: 94 EKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESA 153
++I + + + ++ + N+N K+ + LSA +EE+ + ++ A ++A
Sbjct: 343 DEIEQSSMSVAKSIEQISAGAENQNEKLTAAAGEMTDLSATVEEIASSSNNVAQQAEDAA 402
Query: 154 SMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLAL 213
+M + G+ + + ++ I + + + ++ L E +I+DIV +I IASQT++LA+
Sbjct: 403 AMGQDGQAAATDAIAEMDAIESKATQTVEEMQSLQEEVGRISDIVTMIDDIASQTDMLAI 462
Query: 214 NASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVR 273
NASIEA A +G GFAVVA+ V+ LA+ + + +E+ +LI E++ + + + + + E
Sbjct: 463 NASIEAENASTSGDGFAVVADEVKSLAEDTATATDEVESLIAEVEASTSALAEDMYEMRD 522
Query: 274 VTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQ---MLVDRIDSISKD 330
+ ++ I + A +DI R + ++ +++ ++QA SVQ +V+ + S+S
Sbjct: 523 RVGDGQDTITDTAALLEDIVDRVEDANAGIQSINDATEDQAASVQEATRMVEEVASVSDQ 582
Query: 331 VSDNLNFATQLTDTISGSLEKLNEVKEEI-TKLKENIDR 368
+ + + + + +++++++ + + T+ E +DR
Sbjct: 583 TAGEASNVSAAAEEQTSAIQEISQSAQSLQTQATELLDR 621
>sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|94570|pir||S23064 mcpA protein - Caulobacter
crescentus >gi|40424|emb|CAA47122.1| (X66502) mcpA
[Caulobacter crescentus]
Length = 657
Score = 114 bits (282), Expect = 2e-24
Identities = 97/342 (28%), Positives = 154/342 (44%), Gaps = 47/342 (13%)
Query: 45 KEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDL 104
++ Q+ L + D+E K A + K+ + V+ NL E + ++ GDL
Sbjct: 261 RDNQVHLEQLRADQE--KSAALTADERRSKEAAAAAAAQEASLVVSNLAEGLEKLASGDL 318
Query: 105 ---------GEVNELVSRLNNENVKIAEVNDYIQT----LSAGIEEMNVQAQQLSDFALE 151
G+ +L N + E I LS G +E+ + LS +
Sbjct: 319 TFRVTADFPGDYRKLKDDFNAAMGSLQETMKVIAASTDGLSTGADEIAHASDDLSRRTEQ 378
Query: 152 SASMAEKGRQISDNVALKVSRISETSREMSD------------------AVRILAEYSK- 192
A+ E+ D + V R + +R+ SD AV + E K
Sbjct: 379 QAASLEETAAALDELTATVRRTAAGARQASDVVSTTRGEATHSGQVVHQAVSAMGEIEKS 438
Query: 193 --KINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEI 250
+I+ I+ VI IA QTNLLALNA +EAARAGEAGRGFAVVA+ VR LA RS ++A+EI
Sbjct: 439 SGQISQIIGVIDEIAFQTNLLALNAGVEAARAGEAGRGFAVVAQEVRALAQRSAEAAKEI 498
Query: 251 RNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGI 310
+ LI Q + + V + + EA+Q ++ +I E A E + G+
Sbjct: 499 KALISSS-------TQQVSQGVSLVGQTGEALQRIVTKVGEIDALVTEIAASAAEQATGL 551
Query: 311 DEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKL 352
N V V+++D +++ + + +T T ++ G +L
Sbjct: 552 ----NEVNTAVNQMDQVTQQNAAMVEQSTAATHSLKGETAEL 589
>sp|P35841|DCRA_DESVH CHEMORECEPTOR PROTEIN A >gi|282156|pir||A42275 chemoreceptor
protein A dcrA - Desulfovibrio vulgaris
>gi|145114|gb|AAA23379.1| (M81168) chemoreceptor protein
A [Desulfovibrio vulgaris]
Length = 668
Score = 114 bits (282), Expect = 2e-24
Identities = 77/302 (25%), Positives = 151/302 (49%), Gaps = 20/302 (6%)
Query: 69 KRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYI 128
+R + ++IN+ + + V E L + E + +GE+ + +E ++A
Sbjct: 378 RRIEEQRINLLRVADEVTGVAETLV-RAAEALVTRMGELERDATEAASETTQVA------ 430
Query: 129 QTLSAGIEEMNVQAQQLSDFALESASMAE------KGRQISDNVALKVSRISETSREMSD 182
+EEMNV +++ A +A MA+ G N + ++++ + ++++
Sbjct: 431 ----TAMEEMNVTVTEVARNASSTAEMADCQWRAQSGGTEMANTVRETRQVAQRTEDLAE 486
Query: 183 AVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADR 242
++ LA + I ++ VI+ IA QTNLLALNA+IEAARAG+AGRGFA+VA+ VR+LA++
Sbjct: 487 SLHELARRADNIGRVIEVINEIADQTNLLALNAAIEAARAGDAGRGFALVADEVRKLAEK 546
Query: 243 SKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANM 302
+ + E+ I +Q+ N ++ + E + E ++ I RA A+M
Sbjct: 547 TMVATREVEQAIAAIQQGSNDAVEVMTETRQQVEVTAGKAEDTGKVLSGIVGRAESIADM 606
Query: 303 VKELSEGIDEQANS---VQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEI 359
V+ ++ ++Q+++ + V RI+ +++ D + G ++L + +
Sbjct: 607 VRNIATASEQQSSTSDEINRNVTRINDLTEASRDGCGKQAMPIRQVEGMAQRLEALVDGF 666
Query: 360 TK 361
K
Sbjct: 667 RK 668
>pir||G64532 methyl-accepting chemotaxis protein - Helicobacter pylori (strain
26695) >gi|2313186|gb|AAD07173.1| (AE000532)
methyl-accepting chemotaxis protein (tlpB) [Helicobacter
pylori 26695]
Length = 565
Score = 114 bits (282), Expect = 2e-24
Identities = 89/328 (27%), Positives = 167/328 (50%), Gaps = 31/328 (9%)
Query: 57 DEEVLKKVAF-RLKRGQGKKINVKDKIENLKEV-------IENLEEKIGEVK-LGDLGEV 107
DE VLK AF R + KI+V D+ + + +V +EN + E+K + L +
Sbjct: 240 DELVLKINAFSRGDKDLRAKIDVGDRNDEISQVGRGINLFVENARLIMEEIKGISTLNKT 299
Query: 108 N---------ELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEK 158
+ E + + + + V + +++ + Q+Q L +E+ + ++
Sbjct: 300 SMDKLVQITQETQKSMKDSSTTLNSVKNKATDIASMMNASIEQSQGLRKRLIETQGLVKE 359
Query: 159 GRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIE 218
+ ++ +++ + T E+S V L+ + + I+ +I+ IA QTNLLALNA+IE
Sbjct: 360 SKDAIGDLFSQITESAHTEEELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIE 419
Query: 219 AARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEV 278
AARAGE GRGFAVVA+ VR LA R++KS EI + I + + IN V + N + E +
Sbjct: 420 AARAGEHGRGFAVVADEVRNLAGRTQKSLAEINSTIMVIVQEINAVSSQMNLNSQKMERL 479
Query: 279 KEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANS---VQMLVDRIDSISK------ 329
+ +++ ++ + ++ +++V + ++ +D+ A S ++++V + K
Sbjct: 480 SDMSKSVQETYE---KMSSNLSSVVSDSNQSMDDYAKSGHQIEVMVSDFAEVEKVASKTL 536
Query: 330 -DVSDNLNFATQLTDTISGSLEKLNEVK 356
D SD LN AT ++ T +++N K
Sbjct: 537 ADSSDILNIATHVSGTTMNLDKQVNLFK 564
>pir||E82419 methyl-accepting chemotaxis protein VCA0773 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658196|gb|AAF96671.1| (AE004405) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 473
Score = 114 bits (282), Expect = 2e-24
Identities = 71/265 (26%), Positives = 134/265 (49%), Gaps = 11/265 (4%)
Query: 106 EVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDN 165
EV E ++ N+ + V ++ ++A E++ +Q+ ++ + E+ +Q
Sbjct: 215 EVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVRK 274
Query: 166 VALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEA 225
+ ++S + S +V L + +IN ++ I++I+ QTNLLALNA+IEAARAGE
Sbjct: 275 AIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGEQ 334
Query: 226 GRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNL 285
GRGFAVVA+ VR LA R++ + EI+ +IE++Q + + ++ V + + +
Sbjct: 335 GRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSEV 394
Query: 286 IAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTI 345
IA A ++ ++S EQ+ S++ D+S L+ ++T+
Sbjct: 395 GNDVQAIAHSAQLINDLSVQISTSASEQS-----------SVAHDISSELSDIRSQSNTL 443
Query: 346 SGSLEKLNEVKEEITKLKENIDRIM 370
E+ ++ EIT+ N+ I+
Sbjct: 444 RRVAEQTSQGVSEITQATRNLGEIL 468
>dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 559
Score = 114 bits (282), Expect = 2e-24
Identities = 92/339 (27%), Positives = 162/339 (47%), Gaps = 17/339 (5%)
Query: 44 GKEPQIPLG-LSKEDEEVLKK--VAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVK 100
G+ QI G LS ED V K + K K +++ I KE+ + + E+
Sbjct: 212 GQVSQIAKGDLSGEDINVKSKDEIGRLAKAFDEMKSHLRSLIGKTKEMSDQVTATAQELS 271
Query: 101 LGDLGEV---NELVSRLNNENVKIAEVNDYIQT-------LSAGIEEMNVQAQQLSDFAL 150
V N++ + + + + + + D + +SAG+E + +S A
Sbjct: 272 ASSQESVTVTNQVATTIQDVSEQSMDTVDRAKASVIAAKEMSAGVERITFATADVSIKAD 331
Query: 151 ESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNL 210
E+AS AE G + + ++ + ++ + ++ L E S +I I+ +I SIA QTNL
Sbjct: 332 EAASHAEDGERSIERAIEQMDTAQHSVQQSATFIKQLGERSSEIGSILELIHSIAEQTNL 391
Query: 211 LALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQE 270
LALNA+IEAARAGE G+GFAVVA+ VR+LA+ S +SA +I ++ +Q++ + IQ + +
Sbjct: 392 LALNAAIEAARAGEHGKGFAVVADEVRKLAEESGRSANQISKMLATIQQDTEKAIQEMDK 451
Query: 271 NVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKD 330
E+ + + + A F I + ++S + A + L D I ++ +
Sbjct: 452 GQVEVEKGTKVVGDAGATFAKITASIAAVNEQMLDVSTATQQIARNTIELSDSIQNMEQA 511
Query: 331 VSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRI 369
N + + T++ S E+ EEI E + +
Sbjct: 512 SMQNADH----SQTVAASTEEQLSSMEEIAYSAEQLSNL 546
>pir||A29053 aspartate chemoreceptor protein - Salmonella typhimurium
Length = 552
Score = 113 bits (280), Expect = 3e-24
Identities = 88/291 (30%), Positives = 146/291 (49%), Gaps = 32/291 (10%)
Query: 34 IINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLE 93
+I ++R++ G + L+ + ++A ++ Q I D + ++E + +
Sbjct: 223 VITHIREIASG---DLAKTLTVSGRNEIGELAGTVEHMQRSLI---DTVTQVREGSDAIY 276
Query: 94 EKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESA 153
E+ G+ +L SR + + E ++ L+A +++ A+Q S A ++
Sbjct: 277 SGTSEIAAGN----TDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSAS 332
Query: 154 SMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLAL 213
A G ++ D V T E++D+ SKKI DI+ VI IA QTN+LAL
Sbjct: 333 ETARHGGKVVDGVV-------NTMHEIADS-------SKKIADIISVIDGIAFQTNILAL 378
Query: 214 NASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVR 273
NA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE+ + +
Sbjct: 379 NAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDS-------VSRVDTGSV 431
Query: 274 VTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRI 324
+ E E + +++ A +A E A+ E S GID+ A +V + DR+
Sbjct: 432 LVESAGETMTDIVNAVTRVADIMGEIASASDEQSRGIDQVALAVSEM-DRV 481
>pir||F82382 methyl-accepting chemotaxis protein VCA1069 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658515|gb|AAF96963.1| (AE004432) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 639
Score = 113 bits (280), Expect = 3e-24
Identities = 81/302 (26%), Positives = 154/302 (50%), Gaps = 9/302 (2%)
Query: 70 RGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQ 129
R Q + + DK + + + + + EV + + + + +I D I
Sbjct: 338 RSQDEVGLLADKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEIT 397
Query: 130 TLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSR----ISETSREMSDAVR 185
++ + EM +++ A +A A + Q+ ++ ++ + I + ++E++ AVR
Sbjct: 398 MVATAVTEMASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVR 457
Query: 186 ILAE---YSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADR 242
I++E ++ +I+ I+ I IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR L+ R
Sbjct: 458 IISELEVHANEISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQR 517
Query: 243 SKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANM 302
+ S EEI+ I +Q+ + + E+ ++ E + A+ I+ + ++M
Sbjct: 518 THASTEEIQTKIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDM 577
Query: 303 VKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKL-NEVKEEITK 361
+++ +EQ+ + +S+ ++VSD L Q + + SL + E+ +EI++
Sbjct: 578 ATQIASAAEEQSLVTADINVNTESV-REVSDQLAEEAQQSVQQAKSLHAMAQELNKEISR 636
Query: 362 LK 363
K
Sbjct: 637 FK 638
>pir||G83313 probable chemotaxis transducer PA2652 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948722|gb|AAG06040.1|AE004694_3 (AE004694) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 561
Score = 113 bits (280), Expect = 3e-24
Identities = 72/279 (25%), Positives = 147/279 (51%), Gaps = 19/279 (6%)
Query: 102 GDLGEVNELVSR--------LNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESA 153
GDL ++ E +S + + + +V I +SA E+ AQ+ ++ A ++
Sbjct: 291 GDLKQLVEQMSAQAERSEQAMERQRHETDQVATAINEMSAAAHEVAQSAQRAAEAAQQTD 350
Query: 154 SMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLAL 213
+ +++ D ++ + + R+ ++ L + + I ++ VI SIA QTNLLAL
Sbjct: 351 HEGQAAKRVVDGSIERIHALVDEIRDSGTSLDSLQQDVQSIVSVLGVIRSIAEQTNLLAL 410
Query: 214 NASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVR 273
NA+IEAARAGEAGRGFAVVA+ VR LA R+++S +EI+ +I+ +Q+ N + A +R
Sbjct: 411 NAAIEAARAGEAGRGFAVVADEVRALASRTQQSTQEIQGMIDRLQQGTNAAVDA----MR 466
Query: 274 VTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSD 333
+ E E N A +A ++ + + +L I+ + + +++++++
Sbjct: 467 RSGEAGEGTSNQ-------ANQAGDSLDAIAQLIATINAMNAQIASAAEEQTAVAEEINR 519
Query: 334 NLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGE 372
+++ D+++ ++ + + +L + + R++G+
Sbjct: 520 SVHQIAGAVDSVADEAQQGAQTARSLAQLGQGLGRLVGQ 558
>pir||QREBDT aspartate chemoreceptor protein - Salmonella typhimurium
Length = 552
Score = 113 bits (279), Expect = 4e-24
Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 26/245 (10%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
D + ++E + + E+ G+ +L SR + + E ++ L+A +++
Sbjct: 263 DTVTQVREGSDAIYSGTSEIAAGN----TDLSSRTEQQASALEETAASMEQLTATVKQNA 318
Query: 140 VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVY 199
A+Q S A ++ A G ++ D V T E++D+ SKKI DI+
Sbjct: 319 DNARQASQLAQSASETARHGGKVVDGVV-------NTMHEIADS-------SKKIADIIS 364
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQE 259
VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE+
Sbjct: 365 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDS-- 422
Query: 260 NINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQM 319
+ + + E E + +++ A +A E A+ E S GID+ A +V
Sbjct: 423 -----VSRVDTGSVLVESAGETMTDIVNAVTRVADIMGEIASASDEQSRGIDQVALAVSE 477
Query: 320 LVDRI 324
+ DR+
Sbjct: 478 M-DRV 481
>sp|P02941|MCP2_SALTY METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP-II) (ASPARTATE
CHEMORECEPTOR PROTEIN)
Length = 553
Score = 113 bits (279), Expect = 4e-24
Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 26/245 (10%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
D + ++E + + E+ G+ +L SR + + E ++ L+A +++
Sbjct: 263 DTVTQVREGSDAIYSGTSEIAAGN----TDLSSRTEQQASALEETAASMEQLTATVKQNA 318
Query: 140 VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVY 199
A+Q S A ++ A G ++ D V T E++D+ SKKI DI+
Sbjct: 319 DNARQASQLAQSASETARHGGKVVDGVV-------NTMHEIADS-------SKKIADIIS 364
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQE 259
VI IA QTN+LALNA++EAARAGE GRGFAVVA VR LA RS ++A+EI+ LIE+
Sbjct: 365 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDS-- 422
Query: 260 NINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQM 319
+ + + E E + +++ A +A E A+ E S GID+ A +V
Sbjct: 423 -----VSRVDTGSVLVESAGETMTDIVNAVTRVADIMGEIASASDEQSRGIDQVALAVSE 477
Query: 320 LVDRI 324
+ DR+
Sbjct: 478 M-DRV 481
>pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656398|gb|AAF95016.1| (AE004262) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 626
Score = 113 bits (279), Expect = 4e-24
Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 11/274 (4%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEE 137
V ENL ++ ++++ + GD +N+ + L ++V D Q L++ EE
Sbjct: 337 VNKSCENLGGLVHVVQDRSVALS-GDAVALNQAIDNLVRGQ---SDVMDQTQRLASATEE 392
Query: 138 MNVQAQQLS-------DFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEY 190
+++ QQ+S + + S A +G ++ + + + + ++ L +
Sbjct: 393 VSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQA 452
Query: 191 SKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEI 250
S K++ ++ +I+ IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R+ + EI
Sbjct: 453 SAKVDSVMDIINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVRTVNAVSEI 512
Query: 251 RNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGI 310
IE M++ VI + ++ + EE + + A I + +E A+ + + I
Sbjct: 513 SGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSI 572
Query: 311 DEQANSVQMLVDRIDSISKDVSDNLNFATQLTDT 344
E + + Q + + + IS + ++ TQL T
Sbjct: 573 KELSATSQAMAESMSQISSAMQALESYNTQLRVT 606
>pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog - Lyme disease
spirochete >gi|2688522|gb|AAC66955.1| (AE001161)
methyl-accepting chemotaxis protein (mcp-2) [Borrelia
burgdorferi]
Length = 715
Score = 112 bits (278), Expect = 5e-24
Identities = 84/322 (26%), Positives = 166/322 (51%), Gaps = 37/322 (11%)
Query: 82 IENLKEVIENLEEKIGEVKL-GD--LGEVNELVSRLNNENVKIAEVND------------ 126
IENLK VI +L+E++ +K GD E+N+ + + N N I + +
Sbjct: 373 IENLKNVINSLQERVKLLKENGDHLFSEINKTHNTIKNSNQYIEKTQEEVEKQVEFISNT 432
Query: 127 --YIQTLSAGIEEMNVQAQQLSDFALESASMAEK---GRQISDNVALKVSRISETSREMS 181
I++LS I ++ + + +S+S E+ G Q + K ++ +E + S
Sbjct: 433 TNIIESLSKNISSLDNSIETQAASVEQSSSAIEEMIGGIQSITEITQKAAKSTEELKRFS 492
Query: 182 D-----------AVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFA 230
D ++ + + S ++ + +ISSIASQTNLL++NA+IEA+ AGEAG+GFA
Sbjct: 493 DDGRKKQEEVITQIKEIFKNSTRLQEANSLISSIASQTNLLSMNAAIEASHAGEAGKGFA 552
Query: 231 VVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFD 290
+VAE +++LA++ +E + + I E+ ++I + + + + ++ ++I ++ +
Sbjct: 553 IVAEEIKDLAEQVTSQSESVASSINEIMDSITKTVNTSELTNKAFNQIFDSINLVVQVIE 612
Query: 291 DIARRANETANMVKELSEGID---EQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISG 347
+I E + +E+ + ++ E V++ + + +K++ + ++ T+S
Sbjct: 613 EINHTMQEQSIGSQEILKALNTMREITYEVKIGSNDMFRGNKEIISTIKLLGEINITVSN 672
Query: 348 SLEKLNEVKEEITKLKENIDRI 369
S++ L KEEI L E I+RI
Sbjct: 673 SMKGL---KEEINTLVEAIERI 691
>pir||F71975 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154603|gb|AAD05676.1| (AE001448)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 564
Score = 112 bits (278), Expect = 5e-24
Identities = 89/328 (27%), Positives = 165/328 (50%), Gaps = 31/328 (9%)
Query: 57 DEEVLKKVAF-RLKRGQGKKINVKDKIENLKEV-------IENLEEKIGEVK-LGDLGEV 107
DE VLK AF R + KI+V D+ + + +V +EN + E+K + L +
Sbjct: 239 DELVLKINAFSRGDKDLRAKIDVGDRNDEISQVGRGINLFVENARLIMEEIKGISTLNKT 298
Query: 108 N---------ELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEK 158
+ E + N + + V + +++ + Q+Q L +E+ + ++
Sbjct: 299 SMDKLVQITQETQKSMKNSSTTLNSVKNKATDIASMMNASIEQSQGLRKRLIETQGLVKE 358
Query: 159 GRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIE 218
+ ++ +++ + T E+S V L+ + + I+ +I+ IA QTNLLALNA+IE
Sbjct: 359 SKDAIGDLFSQITESAHTEEELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIE 418
Query: 219 AARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEV 278
AARAGE GRGFAVVA+ VR LA R++KS EI + I + + IN V + N + E +
Sbjct: 419 AARAGEHGRGFAVVADEVRNLAGRTQKSLAEINSTIMVIVQEINDVSSQMNLNSQKMERL 478
Query: 279 KEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANS---VQMLVDRIDSISK------ 329
+ +++ ++ + ++ +++V + ++ +D+ A S ++ +V + K
Sbjct: 479 SDMSKSVQETYE---KMSSNLSSVVLDSNQSMDDYAKSGHQIEAMVSDFAEVEKVASKTL 535
Query: 330 -DVSDNLNFATQLTDTISGSLEKLNEVK 356
D SD LN T ++ T +++N K
Sbjct: 536 ADSSDILNITTHVSGTTMNLDKQVNLFK 563
>pir||E82314 methyl-accepting chemotaxis protein VC0514 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654941|gb|AAF93684.1| (AE004137) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 626
Score = 112 bits (278), Expect = 5e-24
Identities = 81/284 (28%), Positives = 149/284 (51%), Gaps = 6/284 (2%)
Query: 81 KIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNV 140
+I LK + + + G K + EV+ LV + + ++ ++ + ++ E+
Sbjct: 347 QIRQLKTIASGVLD--GAEKTANEAEVSRLV--VEQQLQELEQLATAMNEMAMTASEVAN 402
Query: 141 QAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYV 200
AQ +D A E S + +G + + R+S + V+ L + + +I ++ V
Sbjct: 403 SAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDV 462
Query: 201 ISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQEN 260
I+ IA QTNLLALNA+IEAARAGE+GRGFAVVA+ VR LA R+++S +I +IE++QE
Sbjct: 463 INDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEG 522
Query: 261 INRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQML 320
V +++ E+ T+ V E + + + + ++M +++ +EQ+ + +
Sbjct: 523 AKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEI 582
Query: 321 VDRIDSISKDVSDNLNFATQLTDT-ISGSLEKLNEVKEEITKLK 363
+ +I KD+S L+ A T ++ + K+ E E + + K
Sbjct: 583 NNNTVNI-KDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFK 625
>pir||F82392 methyl-accepting chemotaxis protein VCA0988 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658429|gb|AAF96884.1| (AE004425) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 518
Score = 112 bits (278), Expect = 5e-24
Identities = 73/262 (27%), Positives = 136/262 (51%), Gaps = 18/262 (6%)
Query: 75 KINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAG 134
++ +K + L V+ +++ +++G+ +++ S +N+ A+ + Q L+
Sbjct: 225 QLAMKMRQSELNAVVGRIQDS--SIQIGEAAKMSSQNSATTADNLD-AQTRETEQ-LATA 280
Query: 135 IEEMNV-------QAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRIL 187
I +MN+ AQ SD + + + A G + + ++ + S + L
Sbjct: 281 ITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQL 340
Query: 188 AEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSA 247
+ S I ++ VI SIA QTNLLALNA+IEAARAG+ GRGFAVVA+ VR+LA RS +S
Sbjct: 341 SSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTEST 400
Query: 248 EEIRNLIEEMQENINRVIQAIQENVRVTEEV-------KEAIQNLIAAFDDIARRANETA 300
+EI+ +I +Q + ++ I++ +++ + + L++ DI R + A
Sbjct: 401 KEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIA 460
Query: 301 NMVKELSEGIDEQANSVQMLVD 322
++E++ ++ SVQ + D
Sbjct: 461 TAIEEMANVTEDMNRSVQSISD 482
>pir||G70184 methyl-accepting chemotaxis protein (mcp-4) homolog - Lyme disease
spirochete >gi|2688621|gb|AAC67037.1| (AE001169)
methyl-accepting chemotaxis protein (mcp-4) [Borrelia
burgdorferi]
Length = 753
Score = 112 bits (277), Expect = 7e-24
Identities = 86/302 (28%), Positives = 149/302 (48%), Gaps = 37/302 (12%)
Query: 70 RGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQ 129
+G K D EN + + L ++ ++K ++ ++ ++ N EV Q
Sbjct: 393 KGNLDKDYALDDDENTLDELGMLSLQVVKMKKAISVAISSVLRNISYVNKASLEVASSSQ 452
Query: 130 TLSAG-------IEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETS-REMS 181
LS+ +EEM+ +Q++ +M+ ++ +ALK + S+ R +
Sbjct: 453 NLSSSALQQASALEEMSANVEQIAS----GVNMSANNSYETEQIALKTNENSQIGGRAVE 508
Query: 182 DAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELAD 241
++V + + +K++ VI IA +TNLLALNA+IEAARAG+ G+GFAVVA +R+LAD
Sbjct: 509 ESVIAMQDIVEKVS----VIEEIARKTNLLALNAAIEAARAGDEGKGFAVVASEIRKLAD 564
Query: 242 RSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETAN 301
SK SA EI L+E +N +V E F ++ ETAN
Sbjct: 565 LSKISALEIGELVE--------------DNSKVATEAG-------VIFKEMLPEIEETAN 603
Query: 302 MVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITK 361
+VK++SEG +Q++ + +D + + V + + + QL+ LEK E+++ +
Sbjct: 604 LVKKISEGSSKQSDQIAQFKMALDQVGEVVQSSASSSEQLSSMSDKMLEKSKELRKSVLF 663
Query: 362 LK 363
K
Sbjct: 664 FK 665
>pir||B82204 methyl-accepting chemotaxis protein VC1413 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655909|gb|AAF94570.1| (AE004219) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 578
Score = 112 bits (277), Expect = 7e-24
Identities = 83/328 (25%), Positives = 162/328 (49%), Gaps = 25/328 (7%)
Query: 53 LSKEDEEVLKKVAFRLKRGQGKKIN-VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELV 111
LS+ + ++ +++A K G+ N + IE L+++ ++ + E+ + N+
Sbjct: 262 LSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQAR 321
Query: 112 SRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVS 171
S LN N E I IEEM+ A ++ A ++A + E+ + +D V+
Sbjct: 322 SNLNTLNQHTQETEQAI----TAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVT 377
Query: 172 R--------ISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAG 223
+++ S M++ + ++E +K+IN ++ VI +IA QTNLLALNA+IEAARAG
Sbjct: 378 EAVNSVNGLVNQVS-SMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAG 436
Query: 224 EAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQ 283
E GRGFAVVA+ VR LA R+++S +I +++ ++ V++ + EE E
Sbjct: 437 EQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTN 496
Query: 284 NLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTD 343
+++ + + + E N+ ++ EQ ++ +VS N+ ++
Sbjct: 497 HVMDSLNVVTDSVAEMNNLNTLIATSAMEQR-----------QVTHEVSKNMAAIQEMVR 545
Query: 344 TISGSLEKLNEVKEEITKLKENIDRIMG 371
++ + ++ V E+ + ++G
Sbjct: 546 KLNMNAAQVTSVSNELQNTSHALSDVVG 573
>pir||H82402 methyl-accepting chemotaxis protein VCA0906 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658341|gb|AAF96803.1| (AE004418) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 578
Score = 112 bits (277), Expect = 7e-24
Identities = 76/279 (27%), Positives = 150/279 (53%), Gaps = 22/279 (7%)
Query: 104 LGEVNELVSRLNNENVKIAEVNDY-IQTLSAGIEEMNV---QAQQLSDFALESASMAEK- 158
+ +++ + + ++N+K++ D ++ + +EEM Q ++ A E A AEK
Sbjct: 310 ISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKE 369
Query: 159 ---GRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNA 215
+Q+ + + + + ++ S+ ++ LA S + +++ VI +IA QTNLLALNA
Sbjct: 370 ANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNA 429
Query: 216 SIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVT 275
+IEAARAGE GRGFAVVA+ VR LA R+++S EI +I +QE + + +RV+
Sbjct: 430 AIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKA----EMSTKTIRVS 485
Query: 276 EEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNL 335
+ ++ + + ANE+ ++ ++ I + S+ + ++S ++S NL
Sbjct: 486 ADKMQSTRGNMGV-------ANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNL 538
Query: 336 NFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGEIS 374
+ L+ ++ ++++L V + L+ N+D + I+
Sbjct: 539 STIKTLSGEMNLAIKQLGPV---VVDLQRNVDDLNSAIA 574
>pir||H83286 probable chemotaxis transducer PA2867 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948956|gb|AAG06255.1|AE004713_4 (AE004713) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 490
Score = 112 bits (277), Expect = 7e-24
Identities = 82/274 (29%), Positives = 138/274 (49%), Gaps = 19/274 (6%)
Query: 85 LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQ 144
L E + L +G+V+ G LG+ +E + I +S + + A
Sbjct: 222 LDEGAQALARSMGQVRQGMLGQQSET-----------DQTATAINEMSTTVFHIAQHAAD 270
Query: 145 LSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSI 204
D + E+ +A G+Q V+ ++ +S+ ++ ++ ++ LAE S+KI+ +V VI I
Sbjct: 271 TRDQSQEADRLAGAGQQAVSRVSASIAGLSQGVQDTAEMIQKLAEDSQKISGVVNVIHGI 330
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV 264
A QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R + S +EI +I +Q
Sbjct: 331 AEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLARRVQDSTDEITQMILALQSGTRDA 390
Query: 265 IQAIQEN-------VRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
++ +QE+ V + EA+ + A + + A ++ S+ +E SV
Sbjct: 391 VEFMQESSLKADGCVSQAGDAGEALAAIANAVAQMRESNTQIAVAAEQQSQVAEEMTRSV 450
Query: 318 QMLVDRIDSISKDVSDNLNFATQLTDTISGSLEK 351
+ D + + ++ + QL D ++G L +
Sbjct: 451 VGIRDVTELTVQQTVESAATSQQLVD-LAGDLTR 483
>pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655802|gb|AAF94471.1| (AE004211) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 543
Score = 111 bits (275), Expect = 1e-23
Identities = 72/280 (25%), Positives = 145/280 (51%), Gaps = 17/280 (6%)
Query: 83 ENLKEVIENLEEKIGEVK--LGDLGEV-NELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
+NL+++I+ + + ++ + ++ ++ N+ + + +I +V + + A + ++
Sbjct: 258 QNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAVADVA 317
Query: 140 VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVY 199
+ + A+ + +++G + + ++ + ++++ E V L + S +IN +V
Sbjct: 318 RNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQQSSQINVVVD 377
Query: 200 VISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQ- 258
VI SIA QTNLLALNA+IEAARAGE+GRGFAVVA+ VR LA R++ S EI +IE++Q
Sbjct: 378 VIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQV 437
Query: 259 -------------ENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKE 305
+I++ ++ + + ++E+I N+ IA +E ++ E
Sbjct: 438 MAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASACSEQDSVADE 497
Query: 306 LSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTI 345
LS ++ + Q + ++ + A L DT+
Sbjct: 498 LSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTL 537
>sp|P21822|MCPS_ENTAE METHYL-ACCEPTING CHEMOTAXIS SERINE TRANSDUCER >gi|95558|pir||C32302
serine transducer tse - Enterobacter aerogenes
>gi|148349|gb|AAA24797.1| (M26411) tse [Enterobacter
aerogenes]
Length = 557
Score = 111 bits (274), Expect = 2e-23
Identities = 93/313 (29%), Positives = 154/313 (48%), Gaps = 32/313 (10%)
Query: 34 IINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLE 93
+I +++ + G Q P+ ++ +E + +A LK Q + IE + V + +
Sbjct: 227 MIEHIKRIASGDLTQ-PIPVTSRNE--IGVLAASLKHMQN------ELIETVSGVRQGAD 277
Query: 94 EKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESA 153
I G N+L SR + + E ++ L+A +++ A+Q S AL ++
Sbjct: 278 RSIDGASESAAGN-NDLSSRTEQQAAALEETAASMEQLTATVKQNAENARQASQLALSAS 336
Query: 154 SMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLAL 213
A+KG ++ NV + + +A S+KI DI VI IA QTN+LAL
Sbjct: 337 ETAQKGGKVVANVV--------------ETMHDIASSSQKIADITGVIDVIAFQTNILAL 382
Query: 214 NASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVR 273
NA++EAARAGE GR FAVVA VR LA RS ++A+EI+ LIE +++NRV
Sbjct: 383 NAAVEAARAGEQGRAFAVVAGEVRNLAQRSAQAAKEIKALIE---DSVNRV----DMGSV 435
Query: 274 VTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSD 333
+ E + + +++ A + E A+ E S GID+ +V+ + DR+ + + +
Sbjct: 436 LVESAGDTMGDIVNAVTRVTDIMGEIASASDEQSRGIDQVGQAVREM-DRVTQQNASLVE 494
Query: 334 NLNFATQLTDTIS 346
A L + S
Sbjct: 495 ESASAAALEEQAS 507
>pir||G82618 pilus biogenesis protein XF1953 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107053|gb|AAF84755.1|AE004014_9
(AE004014) pilus biogenesis protein [Xylella fastidiosa]
Length = 693
Score = 111 bits (274), Expect = 2e-23
Identities = 88/378 (23%), Positives = 170/378 (44%), Gaps = 41/378 (10%)
Query: 5 ILSLISIAAL-----FFVSGKKDYENSSNV-----TSQAIINYLRDVLDGKEPQIPLGLS 54
+LSL+SI L + S +++ + V QAI+ L +++ +
Sbjct: 330 LLSLVSIVGLAWSTVIYRSREQEQRYQAQVEFNSRNQQAIMRLLEEIIS---------IG 380
Query: 55 KEDEEVLKKVAFRLKRGQGKKINVK-DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSR 113
+ D V V + IN D++ L I K+ L
Sbjct: 381 EGDLTVKASVTEEMTGAIADAINCAVDELRQLVATINTTSAKVAVSAHETQTTAMRLAEA 440
Query: 114 LNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRI 173
++ +I V++ I ++A IE+++ + + ++ A S +A +G + + +I
Sbjct: 441 AGHQANQITTVSERISEIAASIEQVSRNSAESAEVAQRSVVIAAEGAGVVRETIQGMDQI 500
Query: 174 SETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVA 233
+ +E S ++ L E S++I IV +I+ I+ QTN+LALNA+++AA AGEAGRGFA+VA
Sbjct: 501 RDQIQETSKRIKRLGESSQEIGSIVELINDISEQTNILALNAAVQAASAGEAGRGFAIVA 560
Query: 234 ENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIA 293
+ V+ LA+R+ + I +L+ +Q + N + ++++ ++ A +I
Sbjct: 561 DEVQRLAERTSSATRRIESLVRAIQVDTNEAVSSMEQTTAEVVSGARLAEDAGTALIEIE 620
Query: 294 RRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLN 353
+N +++K +S +QA + AT +T T+ + +
Sbjct: 621 HVSNTLNHLIKNISIAAHQQAAA---------------------ATDITQTMGVIRQITS 659
Query: 354 EVKEEITKLKENIDRIMG 371
+ + K E+I R+ G
Sbjct: 660 QTSQGAGKTAESIGRLAG 677
>pir||G82365 methyl-accepting chemotaxis protein VC0098 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654496|gb|AAF93276.1| (AE004100) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 659
Score = 110 bits (273), Expect = 2e-23
Identities = 72/269 (26%), Positives = 140/269 (51%), Gaps = 19/269 (7%)
Query: 82 IENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDY----IQTLSAGIEE 137
I L+++I ++ +KL + ++N N ++ + ++ ++ +EE
Sbjct: 341 IVTLRQIITDINSVAATIKLA--------ATEISNGNTDLSSRTEQQASNLEQTASSMEE 392
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDI 197
+N +Q SD A+++ +A K +I+ + + ++ T ++++ ++KI DI
Sbjct: 393 LNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMASINES-------AQKIADI 445
Query: 198 VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEM 257
+ VI IA QTN+LALNA++EAARAGE GRGF+VVA VR LA RS +A++I+ LI +
Sbjct: 446 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSANAAKDIKALISDS 505
Query: 258 QENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
I+ + + + +++ +I+ + DIA + E A + E+++ +++
Sbjct: 506 VSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGINEVNQAVNQMDEMT 565
Query: 318 QMLVDRIDSISKDVSDNLNFATQLTDTIS 346
Q ++ + L A QL D ++
Sbjct: 566 QQNAALVEEAAAASESLLAQAEQLYDHVA 594
>gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [Treponema
denticola]
Length = 729
Score = 109 bits (271), Expect = 4e-23
Identities = 77/308 (25%), Positives = 160/308 (51%), Gaps = 23/308 (7%)
Query: 85 LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQ 144
+K++ EN++ + E + V E V+ + N +++ + I+ + I E +V +
Sbjct: 423 IKQIGENVKG-VKEKAMSQAAGVTETVATVEQINGRLSRLVSSIEMQTESINESSVVITR 481
Query: 145 LSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSI 204
+++ ++ A ++ ++ V + + +R ++ V+ +AE S + + +I +I
Sbjct: 482 MAENTVKIAKTLDQNNELIKTVYGQTKVGKDGARTANEIVKQIAEKSASLLEASQIIQNI 541
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENI--- 261
ASQTNLLA+NA+IEAA AGE+G+GFAVVA+ +R+LA+ S ++I +I+E E I
Sbjct: 542 ASQTNLLAMNAAIEAAHAGESGKGFAVVADEIRKLAEGSNLQGKQIAAVIKETTEIIHDI 601
Query: 262 ---------------NRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKEL 306
N V Q ++ + E ++E +N D I +R N+ + +
Sbjct: 602 TEAGSRAEKTFIDVYNLVSQISEKEDSILEVMREQEENGKHVLDAI-KRINDVTSEIDSA 660
Query: 307 SEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENI 366
S + E N + + ++ I+ + +D++N D I+ ++++++++ + K K +I
Sbjct: 661 SAEMLEGGNQIGQEMQKLAEITLETTDSMNEIASGADQITIAVKEVSDITQ---KNKASI 717
Query: 367 DRIMGEIS 374
+ + E+S
Sbjct: 718 ENLSNEVS 725
>pir||C83080 probable chemotaxis transducer PA4520 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950762|gb|AAG07908.1|AE004866_2 (AE004866) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 673
Score = 109 bits (271), Expect = 4e-23
Identities = 85/305 (27%), Positives = 154/305 (49%), Gaps = 40/305 (13%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
+ + + ++IE + + +GEV+ L E VS +N+ V A I+ ++ + +M
Sbjct: 386 ESVAKIHDLIERVSQTVGEVERQTLRV--ESVSAESNQAV--AGQRSQIEQVATAMNQMA 441
Query: 140 VQAQQLSDFALESASMAEK-------GRQISDNVALKVSRISETSREMSDAVRILAEYSK 192
AQ+++ A + S A GR + ++ + R++ + A+ LA S
Sbjct: 442 ATAQEVARSAAMAVSSANSVNQETLSGRSLVESQVGSIQRLAGEIDQSVAAINRLASDSA 501
Query: 193 KINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRN 252
I+ ++ VI IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R+++S EI
Sbjct: 502 SISQVLDVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQQSTAEIEQ 561
Query: 253 LIEEMQENINRVIQAIQEN-------VRVTEEVKEAIQNLIAAFDDIARRANETANMVKE 305
+I +Q ++ ++A+ + V + +V++A++N++ A I
Sbjct: 562 MILRLQGGVDAAVKAMGSSHHTADGTVNESAQVQQALENILGAVGMIV------------ 609
Query: 306 LSEGIDEQANSVQMLVDRIDSISKDVSDN---LNFATQLTDTISGSLEKLN-EVKEEITK 361
+Q + ++ +++ D+ N +N A + T + E+ + E+ ++T+
Sbjct: 610 ------DQNQQIAAAAEQQTAVAHDIDQNIVEINQAGERTAEGASQTERASRELGAQVTQ 663
Query: 362 LKENI 366
LK I
Sbjct: 664 LKRLI 668
>dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 500
Score = 109 bits (270), Expect = 5e-23
Identities = 71/301 (23%), Positives = 150/301 (49%), Gaps = 11/301 (3%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMN 139
D++ VIE EK+ ELV N + + + + I + + + +
Sbjct: 189 DRVAETSHVIETFSEKVLSEMEKTKDVSQELVGAFNEVSQGVEQQSGNITEMKETMLKQD 248
Query: 140 VQAQQLSDFALESASMAEKGRQISDNV-------ALKVSRISETSREMSDAVRILAEYSK 192
Q+++ + + +A++G++ S+ + +V+ + T E + L++ S+
Sbjct: 249 QAVSQMAEVSESTKKLAKQGKEKSEESYTNMLGWSKEVTELQATVDETLTTILGLSKKSQ 308
Query: 193 KINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRN 252
+I IV ++ IA QTNLLALNA+IEAARAGE G+GF+VVAE VR+LA S+ + +++
Sbjct: 309 QITSIVATVNQIAEQTNLLALNAAIEAARAGEQGKGFSVVAEEVRKLAQDSQAATQQVNA 368
Query: 253 LIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDE 312
++ ++Q+ + + + + VT++ E ++ + + + A+ + L + +
Sbjct: 369 ILGDIQKMTGAISEKMMNSKTVTDKGVERATGMLESLTISEQMMSSIASDCELLDDRLSL 428
Query: 313 QANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGE 372
+ S L + I S+ + + + + S+E+ N+ + +TK E ++++ G
Sbjct: 429 LSKSQMSLTEEIVSVQSVTQQ----SQAMVEEVFASVEQQNQAIQNVTKQLEELNQLNGR 484
Query: 373 I 373
+
Sbjct: 485 L 485
>pir||D82218 methyl-accepting chemotaxis protein VC1289 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655776|gb|AAF94448.1| (AE004208) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 631
Score = 109 bits (269), Expect = 6e-23
Identities = 73/262 (27%), Positives = 134/262 (50%), Gaps = 8/262 (3%)
Query: 106 EVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDN 165
+ E SR+ + +I V I ++A +E+ A + A E+ + G
Sbjct: 373 QAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAVTACVHGAGQVTQ 432
Query: 166 VALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEA 225
+ ++E + ++ ++ L + +I+ I+ I +IA QTNLLALNA+IEAARAGE
Sbjct: 433 TQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNAAIEAARAGEQ 492
Query: 226 GRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNL 285
GRGFAVVA+ VR L+ R+ S +EI+ +IE +Q + + + ++ R+ + +
Sbjct: 493 GRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEA 552
Query: 286 IAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDR----IDSISKDVSDNLNFATQL 341
+ + I + ++M +++ +EQA SV + R I +S D++ + A +
Sbjct: 553 SVSLEQIHKTVERISDMATQIASAAEEQA-SVTSEITRNTVGIRDVSNDLAQEAHSAAEQ 611
Query: 342 TDTISGSLEKLNEVKEEITKLK 363
+S E +E+++EI + K
Sbjct: 612 AAELS---ELSHELEQEIRRFK 630
>pir||F82148 methyl-accepting chemotaxis protein VC1859 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656388|gb|AAF95007.1| (AE004261) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 706
Score = 108 bits (266), Expect = 1e-22
Identities = 86/299 (28%), Positives = 150/299 (49%), Gaps = 24/299 (8%)
Query: 82 IENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQ 141
++ L+ +I + + G+V + + S + + EV D + T + + + +
Sbjct: 420 MDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSEAQFKEV-DSVATAAEEMTQTSAH 478
Query: 142 AQQLSDFALESASMAEKGRQISDNVA----LKVSRISETSREMSDAVRILAEYSKKINDI 197
+ + A+ +AS A++ Q D V ++++++ + V LA + I +I
Sbjct: 479 VVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELARNNTGIIEI 538
Query: 198 VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEM 257
+ VI I+ QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R++ S EIR++I ++
Sbjct: 539 LSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGEIRSVINKV 598
Query: 258 QENINRVIQAIQ---ENVRVT-EEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQ 313
+ V++AIQ E + T E+V +A+ L F I + + E+S I +
Sbjct: 599 ELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAI--------HAINEMSHQIVQA 650
Query: 314 ANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGE 372
A Q ++S V+ ++ L+ I E +V E+I +L ++G+
Sbjct: 651 AQDQQ-------TVSAQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQQTLVGQ 702
>dbj|BAB04224.1| (AP001508) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 439
Score = 108 bits (266), Expect = 1e-22
Identities = 80/274 (29%), Positives = 135/274 (49%), Gaps = 16/274 (5%)
Query: 81 KIENLKE--VIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEM 138
K+ NL++ V+E E + ++ + EL+ L ++A ++ Q SA +++
Sbjct: 169 KLLNLEQQLVLEAYENENKRIEAEHERQKRELIQHLTAAAQELAAIS---QQTSAANKQL 225
Query: 139 NVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND-- 196
+++ + A E +A K +S N +++ S + +V+ + S +ND
Sbjct: 226 VHRSETVVASANEGTDLAIKAETLSLNGKAQITTQSSNMDAILQSVKHIQTISTDLNDRS 285
Query: 197 -----IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIR 251
V V+ IA QTNLLALNA+IEA+RAGE G+GFAVVA VR+LAD++K S +
Sbjct: 286 IEITEFVDVVKGIADQTNLLALNATIEASRAGEKGKGFAVVANEVRKLADQTKASTNTVS 345
Query: 252 NLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGID 311
LIE+ E I V+++I ++ E + + + F I NE VK +E +
Sbjct: 346 QLIEKTTEQIASVVESIGTIYQLVSEGSKGMDSTAGTFHSITEAMNE----VKTKNEQMK 401
Query: 312 EQANSVQMLVDRIDSISKDVSDNLNFATQLTDTI 345
+ + +D S VS + N +LT +
Sbjct: 402 TDLQQLLSVTKELDESSLQVSQSANQLNRLTTEV 435
>pir||E82395 methyl-accepting chemotaxis protein VCA0974 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658413|gb|AAF96870.1| (AE004423) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 561
Score = 107 bits (265), Expect = 2e-22
Identities = 79/296 (26%), Positives = 150/296 (49%), Gaps = 24/296 (8%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
+V + L +E L EV + +N +++ E I+ +++ +
Sbjct: 271 DVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELME----IEQVASAVN 326
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMS----DAVRI---LAE 189
E+ A +SD A + + A + +++ + S+ S +M+ DA R+ L E
Sbjct: 327 ELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKE 386
Query: 190 YSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEE 249
S++I++++ VI ++ QTNLLALNA+IEAARAGE+GRGFAVVA+ VR LA R++ S +E
Sbjct: 387 QSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKE 446
Query: 250 IRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEG 309
I+ +IEE+Q ++Q ++ + + K + +AN+ + E
Sbjct: 447 IQAIIEELQTQSTMANDSMQTSLDMLTQNKA-----------LTAKANDALIGITESVSD 495
Query: 310 IDEQANSVQMLVDRIDSISKDVSDNL-NFATQLTDTISGSLEKLNEVKEEITKLKE 364
I++ V ++ +++D++ N+ N +T + ++G + + E++ L E
Sbjct: 496 INDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTG-ISQSASASNELSHLAE 550
>dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 671
Score = 107 bits (265), Expect = 2e-22
Identities = 71/319 (22%), Positives = 155/319 (48%), Gaps = 7/319 (2%)
Query: 53 LSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVS 112
L++ +E+L ++ + +G +V++ ++L + E E+ L V ++
Sbjct: 344 LTESFKEMLVQLRGIITTVKGSTAHVQEAADHLTAISEETIASSEEIALA----VRDVAI 399
Query: 113 RLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSR 172
+ + E I L+ +E+M++ ++ + E+ + G + ++ K
Sbjct: 400 GSTKQVEHLDEAKRQIDQLARQMEQMSLSMTEVGSLSNETRLAGQSGSEKVQHLKTKTLE 459
Query: 173 ISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVV 232
+ +M D + L+++ +IN++++ I+ ++ QTNLLALNASIEAARAGE G+GFAVV
Sbjct: 460 ANTVFDQMEDGLLKLSDHIMEINEVIHTINHLSEQTNLLALNASIEAARAGEHGKGFAVV 519
Query: 233 AENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAI---QNLIAAF 289
A VR LA++S + + I + +VI +++ + E +++ +N
Sbjct: 520 ANEVRRLAEQSSHETVRVGDTITGIVNRSKQVIVDMKQARSILSEQSDSVDETENTFLHM 579
Query: 290 DDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSL 349
+ ++ NET V+E + EQ + ++ + +++ + TD +L
Sbjct: 580 ASLIKQMNETLASVQEDFGTLAEQNSQFVKRIEAVVEVAEQAAATSEEVNASTDEQVTAL 639
Query: 350 EKLNEVKEEITKLKENIDR 368
+++ E E++ + +++
Sbjct: 640 QRITEAAEQLQEASHELNQ 658
>pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - Bacillus
subtilis >gi|2619023|gb|AAB84447.1| (AF027868) YoaH
[Bacillus subtilis] >gi|2634254|emb|CAB13753.1| (Z99114)
similar to methyl-accepting chemotaxis protein [Bacillus
subtilis]
Length = 534
Score = 107 bits (264), Expect = 2e-22
Identities = 77/269 (28%), Positives = 145/269 (53%), Gaps = 21/269 (7%)
Query: 116 NENVKIAEVNDY-IQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRIS 174
+ NVK + + + ++++ ++ ++ A + A S+SM +K S +V + ++
Sbjct: 268 DSNVKQSSMTEKSAESITELLDSISSVASNTGNIADLSSSMRDKAEIGSKSVNKMLDQMK 327
Query: 175 ETSREMSDA---VRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAV 231
+ + A ++ L + +I+DI +I++I+ QTNLLALNA+IEAARAGE G+GFAV
Sbjct: 328 FIDKSVDSAGNGLQTLVASTAEISDISSLITTISEQTNLLALNAAIEAARAGEQGKGFAV 387
Query: 232 VAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDD 291
VAE VR+LAD + KSA I++++ +Q N I+ + N++V V+E + + I +
Sbjct: 388 VAEEVRKLADETNKSANHIQSVVATIQ---NESIETV-NNIKV---VQENVSSGIVLSQE 440
Query: 292 IARRANETANMVKELSEGIDEQANSVQMLVDRIDSI----------SKDVSDNLNFATQL 341
NE N+V++++ I E A + Q L ++ I +K+ S N
Sbjct: 441 TTGNFNEILNLVEQVTSQIQEVAAATQQLTSGVEVIQHTVHTLAAGTKETSANTEAVANS 500
Query: 342 TDTISGSLEKLNEVKEEITKLKENIDRIM 370
+ S+ +++ E +++L E + ++
Sbjct: 501 SQEQLHSMGEISYAAESLSQLAEELQTVI 529
>pir||H81431 methyl-accepting chemotaxis signal transduction protein Cj0144
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967638|emb|CAB72628.1| (AL139074) methyl-accepting
chemotaxis signal transduction protein [Campylobacter
jejuni]
Length = 659
Score = 106 bits (263), Expect = 3e-22
Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 37/284 (13%)
Query: 25 NSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIEN 84
N + + ++N L DVL + + K EE K ++ ++K+EN
Sbjct: 399 NPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEY-------------KSLDFRNKLEN 445
Query: 85 LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQ 144
+E +G+ + L + ++ + L NE+ K+ + T S N QAQ
Sbjct: 446 ASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSS------NSQAQS 499
Query: 145 LSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSI 204
L E+A+ E+ NV++K S + S E I ++ +I I
Sbjct: 500 LE----ETAAALEEITSSMQNVSVKTSDVITQSEE--------------IKNVTGIIGDI 541
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV 264
A Q NLLALNA+IEAARAGE GRGFAVVA+ VR+LA+R++KS EI + ++IN +
Sbjct: 542 ADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDM 601
Query: 265 IQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSE 308
++I+E ++ +++ + D ANE+A + +S+
Sbjct: 602 AESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAIISSTVSD 645
>pir||E81444 probable methyl-accepting chemotaxis signal transduction protein
Cj0262c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6967739|emb|CAB72730.1| (AL139074) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 665
Score = 106 bits (263), Expect = 3e-22
Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 37/284 (13%)
Query: 25 NSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIEN 84
N + + ++N L DVL + + K EE K ++ ++K+EN
Sbjct: 405 NPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEY-------------KSLDFRNKLEN 451
Query: 85 LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQ 144
+E +G+ + L + ++ + L NE+ K+ + T S N QAQ
Sbjct: 452 ASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSS------NSQAQS 505
Query: 145 LSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSI 204
L E+A+ E+ NV++K S + S E I ++ +I I
Sbjct: 506 LE----ETAAALEEITSSMQNVSVKTSDVITQSEE--------------IKNVTGIIGDI 547
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV 264
A Q NLLALNA+IEAARAGE GRGFAVVA+ VR+LA+R++KS EI + ++IN +
Sbjct: 548 ADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDM 607
Query: 265 IQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSE 308
++I+E ++ +++ + D ANE+A + +S+
Sbjct: 608 AESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAIISSTVSD 651
>pir||B81251 probable methyl-accepting chemotaxis signal transduction protein
Cj1564 [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6968981|emb|CAB73552.1| (AL139079) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 662
Score = 106 bits (263), Expect = 3e-22
Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 37/284 (13%)
Query: 25 NSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIEN 84
N + + ++N L DVL + + K EE K ++ ++K+EN
Sbjct: 402 NPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEY-------------KSLDFRNKLEN 448
Query: 85 LKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQ 144
+E +G+ + L + ++ + L NE+ K+ + T S N QAQ
Sbjct: 449 ASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSS------NSQAQS 502
Query: 145 LSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSI 204
L E+A+ E+ NV++K S + S E I ++ +I I
Sbjct: 503 LE----ETAAALEEITSSMQNVSVKTSDVITQSEE--------------IKNVTGIIGDI 544
Query: 205 ASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV 264
A Q NLLALNA+IEAARAGE GRGFAVVA+ VR+LA+R++KS EI + ++IN +
Sbjct: 545 ADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDM 604
Query: 265 IQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSE 308
++I+E ++ +++ + D ANE+A + +S+
Sbjct: 605 AESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAIISSTVSD 648
>gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis protein
[Desulfovibrio gigas]
Length = 649
Score = 106 bits (261), Expect = 5e-22
Identities = 82/279 (29%), Positives = 137/279 (48%), Gaps = 39/279 (13%)
Query: 79 KDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQT----LSAG 134
+D E +K+V E +K+ E +ELV + ++ ++ D ++T +++G
Sbjct: 301 RDVAEKMKQVAEGDLR----IKVAPRSEQDELVRAIAEMIERVTQIVDEVRTGAQNVASG 356
Query: 135 IEEMNVQAQQLSDFALE--------SASMAEKGRQISDNVALK------VSRISETSREM 180
EEM+ ++ LS A E S+SM E I+ N S+ ++ ++E
Sbjct: 357 DEEMSASSETLSQGASEQAASVEQCSSSMEEMSSSINQNAENARQTGSIASKAAQDAKES 416
Query: 181 SDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELA 240
+AV K+I + +I IA QT+LLALNA++EAARAGE GRGFAVVA VR+LA
Sbjct: 417 GEAVHNTVAAMKEIAGKISIIEEIARQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLA 476
Query: 241 DRSKKSAEEIR--------------NLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLI 286
+RS+ +A EI L+E++ +I + +QE ++E +
Sbjct: 477 ERSQTAAAEINKLSSTSTAVAERAGTLLEKLVPDIQKTADLVQEIAATSQEQNSGAGQVN 536
Query: 287 AAFDDIARRANETANMVKEL---SEGIDEQANSVQMLVD 322
A + + + A+ +EL +E + QA +Q +D
Sbjct: 537 LALQQLDQVVQQNASASEELASTAEELSAQAEQLQAAMD 575
>gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis protein McpT [Sinorhizobium
meliloti]
Length = 652
Score = 106 bits (261), Expect = 5e-22
Identities = 85/323 (26%), Positives = 158/323 (48%), Gaps = 17/323 (5%)
Query: 1 MKNSILSLISIAAL--FFVSGKKDYENSSNVTSQAIINYLRDVLD---GKEPQIPLGLSK 55
+++SI ++++ AA F KDY+N A +N L + +D + ++ L+
Sbjct: 262 LQSSIATVVAAAAAGDFTRRISKDYDNDDLNRFAASVNELVNSVDTGIAETRRVIASLAT 321
Query: 56 EDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLN 115
D K F+ + + NV D ++ L++ + + + G EL S +
Sbjct: 322 GDLTQSMKGQFQGAFAE-LQTNVNDTLQTLQKTLREVRMTTDSIN----GNSTELRSAAD 376
Query: 116 NENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISE 175
+ + + + ++ SA ++E+ + ++ A E+ M + + D+ A S +
Sbjct: 377 DLSKRTEQQAAALEETSAALDEITAAVRNSTERAQEATVMVTEAK---DSAAESASVV-- 431
Query: 176 TSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAEN 235
R DA+ + + S +I I VI IA QTNLLALNA +EAARAG+AG+GFAVVA+
Sbjct: 432 --RNAIDAMGRIEQASSEIGQITNVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQE 489
Query: 236 VRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARR 295
VRELA R+ +A++I++LI + + ++ +Q +++ + + IA
Sbjct: 490 VRELAQRAASAAKDIKSLISKSGGEVATGVKLVQATGAALGQIETRVLKINDHIHSIATA 549
Query: 296 ANETANMVKELSEGIDEQANSVQ 318
A E + + E+S +++ Q
Sbjct: 550 AREQSTGLGEVSTAVNQMDQVTQ 572
>pir||D75590 methyl-accepting chemotaxis protein - Deinococcus radiodurans
(strain R1) >gi|6460728|gb|AAF12433.1|AE001863_58
(AE001863) methyl-accepting chemotaxis protein
[Deinococcus radiodurans]
Length = 743
Score = 105 bits (260), Expect = 7e-22
Identities = 87/318 (27%), Positives = 169/318 (52%), Gaps = 33/318 (10%)
Query: 69 KRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVN--- 125
+RG+ + + ++++ ++ L + + EV+ G VN+ +++ +I + +
Sbjct: 437 RRGKVTDDVLGNVVDSINLMVGELADTLREVQ-GASQSVNQGSAQMLTTTAQIGQGSQLT 495
Query: 126 -DYIQTLSAGIEEMNVQAQQLSDFALESASMAEK-------GRQISDNVALKVSRISETS 177
+ + L+ E++++ Q L+ A +SA+ A++ G+Q ++ I E +
Sbjct: 496 AEQSRRLAERAAEISLRIQDLARSAQDSAAAAQQALQTSQQGQQAVQGTLQGMAAIREGT 555
Query: 178 REMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVR 237
++++ ++ L+E S++I IV I+ I+SQTNLL+L+ASIEAA AGEAG FAVVA+ VR
Sbjct: 556 QDVAQTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVR 615
Query: 238 ELADRSKKSAEEIRNLIEEMQENINRVIQAIQENV-------RVTEEVKEAIQNLIAAFD 290
+LA+++ ++ + LI +Q +I +V Q +Q + RV EE +Q L
Sbjct: 616 QLAEQTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQEL----G 671
Query: 291 DIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLE 350
DIA+R+ + A + ++S QA ++ L + +D++ A Q G+ E
Sbjct: 672 DIAQRSAQLAGQMSDVS---GAQARDIEQLGQGV----QDIAALAEGAQQSVQRGRGAAE 724
Query: 351 KLNEVKEEITKLKENIDR 368
+L + T+L +++ R
Sbjct: 725 QLRAL---ATQLDQSLSR 739
>gb|AAG34156.1|AF312878_1 (AF312878) methyl-accepting chemotaxis protein McpW [Sinorhizobium
meliloti]
Length = 689
Score = 105 bits (260), Expect = 7e-22
Identities = 78/282 (27%), Positives = 142/282 (49%), Gaps = 34/282 (12%)
Query: 80 DKIENLKEVIENLEEKIGEVKLGDL---GEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
D +E L +V+ +++E ++ ++L R + + + SA +E
Sbjct: 341 DTVERLSQVLSSVKENTASIESNGRQMRSAADDLARRTEKQAASLEQT-------SAALE 393
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEY---SKK 193
E+ V + ++ A E++ M ++ R ++ E+ R + +A+ +A S +
Sbjct: 394 EITVTVKTATERAEEASHMVDETRINAE----------ESGRIVGEAIAAMARIEGASSE 443
Query: 194 INDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNL 253
I I+ VI IA QTNLLALNA +EAARAGEAG+GFAVVA+ VRELA R+ +A++I+ L
Sbjct: 444 IGKIIDVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRAAGAAKDIKAL 503
Query: 254 IEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQ 313
++R ++ VR+ +E +A+ + A I + +E S G+ E
Sbjct: 504 -------VSRSGNEVKTGVRLVQETGDALGRIGAKVACINEHMSSIVMAAREQSTGLRE- 555
Query: 314 ANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEV 355
+ V ++D +++ + + + T++ EKL+E+
Sbjct: 556 ---INTAVAQLDQMTQQNAAMVEQTNAASHTLAQDAEKLSEI 594
>gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis protein McpX [Sinorhizobium
meliloti]
Length = 788
Score = 105 bits (260), Expect = 7e-22
Identities = 85/330 (25%), Positives = 154/330 (45%), Gaps = 40/330 (12%)
Query: 42 LDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENL-KEVIENLEEKIGEVK 100
L+G Q+ E E ++ L+RG+ + N + + L ++++ L + + +
Sbjct: 382 LEGFRHQLADNRRLESEARHEREQAELERGRSE--NERTEASALQRDIVARLGKALSHLS 439
Query: 101 LGDL---------GEVNELVSRLNNENVKIAE----VNDYIQTLSAGIEEMNVQAQQLSD 147
GDL GE +L N + E VN + + +G E++ A LS
Sbjct: 440 AGDLAFRLTGDFPGEYAQLKRDFNATMESLEETIRTVNHSVVNIGSGTSEISGAANDLSH 499
Query: 148 FALESASMAEKGRQISDNVALKVSRISETSREMSDAVRI--------------------- 186
+ A+ E+ D + +V+ +E ++ + +V +
Sbjct: 500 RTEQQAASLEETAAALDELTSQVNASAENAKVAAKSVEVASSDAEQSGEVVQKAIAAMQG 559
Query: 187 LAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKS 246
+ + S +++ I+ VI IA QTNLLALNA +EAARAG+AG+GFAVVA+ VRELA RS +
Sbjct: 560 IEQSSHEVSRIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSANA 619
Query: 247 AEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKEL 306
A+EI+ LI + + + + E++ E + + I+ A+E A +KE+
Sbjct: 620 AKEIKTLINTSAGQVREGVDLVGKAGGALEKIAEQVVQINGLIRQISSSASEQAVGLKEI 679
Query: 307 SEGIDEQANSVQM---LVDRIDSISKDVSD 333
+ +++ Q +V+ + S ++D
Sbjct: 680 NSAVNQMDQVTQQNAAMVEETTAASMALND 709
>pir||E82481 methyl-accepting chemotaxis protein VCA0268 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657665|gb|AAF96179.1| (AE004366) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 643
Score = 105 bits (259), Expect = 9e-22
Identities = 79/333 (23%), Positives = 161/333 (47%), Gaps = 34/333 (10%)
Query: 61 LKKVAFRLKRGQGK-----KINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRL- 114
LK L +G G ++N D + + E + + L + + +++S
Sbjct: 320 LKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMML-QISDATQIISSSI 378
Query: 115 --------NNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQ----- 161
NE + I+ ++ Q ++A I +M+ A+ +++ +S + E +
Sbjct: 379 EQLSQTAKENEQMLISHSSETDQVVTA-ITQMSESARTVAESVTQSNQITEAASKEAQQS 437
Query: 162 --ISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEA 219
I +N V+ + MS+++ + + KI++++ VI +I+ QTNLLALNA+IEA
Sbjct: 438 LVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNAAIEA 497
Query: 220 ARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVK 279
ARAGE GRGFAVVA+ VR LA R++ S EI +++ ++ E + V+ A+ E K
Sbjct: 498 ARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAM-------ERTK 550
Query: 280 EAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFAT 339
+ Q D + + NM+ ID+ + + ++ +++ ++S N+
Sbjct: 551 QQCQTTA----DKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIR 606
Query: 340 QLTDTISGSLEKLNEVKEEITKLKENIDRIMGE 372
++ +++ S + E ++ +++++G+
Sbjct: 607 EIVESLVVSGRQTVGATESLSHSNHELEQLVGK 639
>pir||C81389 probable MCP-type signal transduction protein Cj0448c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967919|emb|CAB75086.1| (AL139075) putative MCP-type
signal transduction protein [Campylobacter jejuni]
Length = 365
Score = 104 bits (257), Expect = 2e-21
Identities = 72/247 (29%), Positives = 133/247 (53%), Gaps = 12/247 (4%)
Query: 73 GKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVS--------RLNNE--NVKIA 122
G KIN D ++ L+E +NL KI + + +L N++ S +L + NV +
Sbjct: 3 GSKINHSD-LQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLLT 61
Query: 123 EVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSD 182
V I + + E +A+ +S ++ S + ++ I++++ + I+E++ + D
Sbjct: 62 GVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIANSINASLGNITESANKTRD 121
Query: 183 AVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADR 242
L +I +++ +I ++ QTNLLALNA+IEAARAGE GRGFAVVA+ VR+LA++
Sbjct: 122 VAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEK 181
Query: 243 SKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANET-AN 301
++K+ E+ I +++N N + ++ +++ + I + F + A+ T +N
Sbjct: 182 TQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNSN 241
Query: 302 MVKELSE 308
V SE
Sbjct: 242 AVGIASE 248
>pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655898|gb|AAF94560.1| (AE004218) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 641
Score = 104 bits (256), Expect = 2e-21
Identities = 79/325 (24%), Positives = 155/325 (47%), Gaps = 60/325 (18%)
Query: 109 ELVSRLNNENVKIAEVNDYIQTLSAGIEEMN-------VQAQQLSDFALESASMAEKGRQ 161
EL++ L + + ++ ++ ++ G EE + Q+++F E A+ A + +Q
Sbjct: 57 ELLAGLEESSSAMTQLRSSMEQIAVGAEESSSATKQSETAVSQMNNFINEQATYATQSKQ 116
Query: 162 I-----------SDNVALKVSRISETSREMSDAVRILAEYSK---KINDIVYVISSIASQ 207
I ++ + VS + +S +D+V+ + E S+ KIND V + IA Q
Sbjct: 117 ILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAVKQVIHIADQ 176
Query: 208 TNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQA 267
TNLLALNA+IEA RAG+ G+GFAVVA+ VR LA++++K+A I +LI+++ V
Sbjct: 177 TNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEKNAANIESLIKDISNGAEMVSNG 236
Query: 268 IQEN-----------------------------------VRVTEEVKEAIQNLIAAFDDI 292
++ + ++ +E+ A + + +
Sbjct: 237 VKSSSQKAESEVQKGHVVNKQLTLIRNEMVDLVKDSEVLLKAADEMSSAAVIALKGSESV 296
Query: 293 ARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQL---TDTISGSL 349
++ A E + +E + +D+Q ++ V S+ +++D L +T + ++ ++ +
Sbjct: 297 SQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLD-ELTDELRTSTDIVKSSEEVAAAA 355
Query: 350 EKLNEVKEEITKLKENIDRIMGEIS 374
E+L+ EEI + I + +IS
Sbjct: 356 EELSAGIEEINRSSNEIMGALNQIS 380
Score = 90.5 bits (221), Expect = 3e-17
Identities = 82/371 (22%), Positives = 168/371 (45%), Gaps = 21/371 (5%)
Query: 9 ISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRL 68
+S AA+ + G + ++ S A L+ + + QI L + + L ++ L
Sbjct: 282 MSSAAVIALKGSESVSQAAQEQSAACEESLKSL---DQQQIALDGAVTAAQSLDELTDEL 338
Query: 69 KRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYI 128
+ ++ E + E L I E+ NE++ LN + + +
Sbjct: 339 RTST----DIVKSSEEVAAAAEELSAGIEEINRSS----NEIMGALNQISSGAQHMAKSV 390
Query: 129 QTLSAGIEEMNVQAQQLSDFALESASMAEK-------GRQISDNVALKVSRISETSREMS 181
+T + ++ A+ + A S EK + D + L ++ ++ + E
Sbjct: 391 ETGITSLTQIEQGARLGKERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENL 450
Query: 182 DAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELAD 241
+ + + S++I+ IV IS+++ QT +LA+N ++EAARAGE G+GFAVV+ +++ LA+
Sbjct: 451 NEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLAN 510
Query: 242 RSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETAN 301
+ ++AE+I++ ++ +QE IN V + + + + E + I D++ R ++
Sbjct: 511 DAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVL 570
Query: 302 MVKELSE---GIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEE 358
K +SE GI+ + + +I + +++ S A S S +L E
Sbjct: 571 GSKRISESAGGIERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIEN 630
Query: 359 ITKLKENIDRI 369
I + + + I
Sbjct: 631 IAAVADELQSI 641
>emb|CAB54058.1| (AJ245436) methyl-accepting chemotaxis protein, 53.9 kD
[Pseudomonas putida]
Length = 492
Score = 104 bits (256), Expect = 2e-21
Identities = 86/348 (24%), Positives = 159/348 (44%), Gaps = 23/348 (6%)
Query: 8 LISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFR 67
++SI LFFV + + + + I++ + D+ G + ++EV K +
Sbjct: 164 VVSINCLFFVVIFLLMKKTRSSIDE-IVHVMNDMSRG---DLTYRTIPSNDEVGKMQSSI 219
Query: 68 LKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDY 127
+ G G V IE++K + +L GE N++ + KI E
Sbjct: 220 IAMGAG----VSALIESIKHIQGDLFNSAGEALNISQSTSNDICDQAG----KIDEFVSA 271
Query: 128 IQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRIL 187
+ +S I E + A + S + E +A G++ + ++ +S+ + A++ +
Sbjct: 272 LSQISFAITETSNAANKSSALSSEGRQLAVHGQKAIETAVSSINALSQRVNDSHVAIKCI 331
Query: 188 AEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSA 247
KI I+ +I I QTNLLALNA+IEAA AGEAG+GFAVVA+ VR LA R+ S
Sbjct: 332 EADIAKIGKIIEIIDQITDQTNLLALNAAIEAAHAGEAGKGFAVVADEVRSLAQRTNNST 391
Query: 248 EEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELS 307
EI+ +I + + I + + + V ++ A + + I ++ + +++
Sbjct: 392 YEIQAMIASLNKGIFFALGVMGDCVVESKNSVNAASEASRSIEKIVDSVSQVMLQIAQVA 451
Query: 308 EGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEV 355
+EQ+ ++ KD+ DN N ++ + +++EV
Sbjct: 452 TASEEQS-----------AVVKDMLDNANIIREIAAGVELGSRRISEV 488
>pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655901|gb|AAF94562.1| (AE004219) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 595
Score = 103 bits (254), Expect = 3e-21
Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 21/300 (7%)
Query: 82 IENLKEVIENLEEKIGEV--KLGDLGE-VNELVSRLNNENVKIAEVNDYIQTLSAGIEEM 138
I ++ + ++L +GEV + + V +L S + + + + +++ + +M
Sbjct: 302 ITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQM 361
Query: 139 NVQAQQLSDFALESASM---AEKGRQISDNVALKVSRISE----TSREMSDAVRILAEYS 191
+ +++ A ES++ A++ + S +V K +S +++ + L +
Sbjct: 362 AITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEAST 421
Query: 192 KKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIR 251
++I V V+ I+ QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA RS+++ EI+
Sbjct: 422 RQIESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIK 481
Query: 252 NLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGID 311
LI+ + E + I + R EE +I D I E + +++ +
Sbjct: 482 GLIQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAAASE 541
Query: 312 EQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMG 371
EQ+ + + ++S N+ +TI S ++ + EE+ + + + +MG
Sbjct: 542 EQSVA-----------ADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMG 590
>pir||E82508 methyl-accepting chemotaxis protein VCA0031 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657412|gb|AAF95945.1| (AE004347) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 521
Score = 102 bits (251), Expect = 8e-21
Identities = 68/285 (23%), Positives = 141/285 (48%), Gaps = 11/285 (3%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEE 137
+KD+I + +V +E++IG ++ ++ S ++N + D I+ ++ I
Sbjct: 246 IKDRIVEVTDVSHKVEQQIGRLE----HNIHNQQSEISNSVAIGHQSQDSIKAVTESIYA 301
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDI 197
+ +Q + +S + + + + + K ++T+ E++ V +K+ DI
Sbjct: 302 ASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQV-------EKVTDI 354
Query: 198 VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEM 257
+ +I SIA QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA+++ S ++ L+ ++
Sbjct: 355 LQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQL 414
Query: 258 QENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
+I ++E++ AI++ D N+ + + ++Q V
Sbjct: 415 SGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQANSTNQNAVHDSEQQNRLV 474
Query: 318 QMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKL 362
+ L++++ + + L + +++ L ++ + + +L
Sbjct: 475 EQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRSNLKQL 519
>pir||F82217 methyl-accepting chemotaxis protein VC1298 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655786|gb|AAF94457.1| (AE004209) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 543
Score = 101 bits (250), Expect = 1e-20
Identities = 68/297 (22%), Positives = 140/297 (46%), Gaps = 15/297 (5%)
Query: 78 VKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEE 137
V D ++ +++ +L + KL ++ +V + + NN+ + AEV I + ++
Sbjct: 251 VSDSLQQVQDTSHSLADSAK--KLTNVAQVTDQAA--NNQQKETAEVQTNITDMQGKQQQ 306
Query: 138 MNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDI 197
+ ++ S + S+ ++ + + + + + + + L + +++ I
Sbjct: 307 VEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSI 366
Query: 198 VYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEM 257
+ VI IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR LA R+ ++ I N+I
Sbjct: 367 LGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGF 426
Query: 258 QENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
Q + + ++ + ++ L AA +V E+ + + A +
Sbjct: 427 QRDSQASLSSVDTVCSHAHQRSSEVEELSAAM----------TRVVSEMQQ-VLSHAMGI 475
Query: 318 QMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGEIS 374
Q R +S ++ + ++ T + S S + E+ ++ L + ++ ++ + +
Sbjct: 476 QEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFT 532
>gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum]
Length = 427
Score = 99.5 bits (244), Expect = 5e-20
Identities = 74/313 (23%), Positives = 155/313 (48%), Gaps = 22/313 (7%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
N+ + + E+ N++ V L G V+E + I +N I+T + +
Sbjct: 113 NMTETASAVNEITANIDGVKHRVDLQVSG-VSEATDTVERIIKTIKGLNSSIETQAVNVA 171
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
+ + +Q+ + E+ + ++A+ + +T S + ++E S + +
Sbjct: 172 QSSSSVEQMVANIVSITQTLERSDEAVHSLAIATADGRDTLVSSSGITQKISEESGSLLE 231
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
VI IASQTNLLA+NA+IEAA AGEAG+GFAVVA+ +R+LA+ S + I ++
Sbjct: 232 ASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIRKLAEESSTQGKTITETLKT 291
Query: 257 MQENINRV---IQAIQEN----VRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEG 309
+ I+ + +A++E R++++V+ ++L A + + + E +K ++
Sbjct: 292 LSVEIDTLSTSSKAVEEQFDTIFRLSDQVRTMSRSLTEAMKEQSDGSREVLAAIKSINAA 351
Query: 310 -IDEQANSVQML---------VDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEV---- 355
+D + S ML + R+D ++ +++ ++N I+ ++ ++NE+
Sbjct: 352 TVDVKEGSADMLKGGEVIAREMQRLDDLTSEIARSMNEMAAGAIEINNAVHEVNEITQRS 411
Query: 356 KEEITKLKENIDR 368
K+ I+ L + +++
Sbjct: 412 KQSISSLADEVEK 424
>pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1) - syphilis
spirochete >gi|3322777|gb|AAC65475.1| (AE001225)
methyl-accepting chemotaxis protein (mcp2-1) [Treponema
pallidum]
Length = 845
Score = 99.5 bits (244), Expect = 5e-20
Identities = 74/313 (23%), Positives = 155/313 (48%), Gaps = 22/313 (7%)
Query: 77 NVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIE 136
N+ + + E+ N++ V L G V+E + I +N I+T + +
Sbjct: 531 NMTETASAVNEITANIDGVKHRVDLQVSG-VSEATDTVERIIKTIKGLNSSIETQAVNVA 589
Query: 137 EMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKIND 196
+ + +Q+ + E+ + ++A+ + +T S + ++E S + +
Sbjct: 590 QSSSSVEQMVANIVSITQTLERSDEAVHSLAIATADGRDTLVSSSGITQKISEESGSLLE 649
Query: 197 IVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEE 256
VI IASQTNLLA+NA+IEAA AGEAG+GFAVVA+ +R+LA+ S + I ++
Sbjct: 650 ASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIRKLAEESSTQGKTITETLKT 709
Query: 257 MQENINRV---IQAIQEN----VRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEG 309
+ I+ + +A++E R++++V+ ++L A + + + E +K ++
Sbjct: 710 LSVEIDTLSTSSKAVEEQFDTIFRLSDQVRTMSRSLTEAMKEQSDGSREVLAAIKSINAA 769
Query: 310 -IDEQANSVQML---------VDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEV---- 355
+D + S ML + R+D ++ +++ ++N I+ ++ ++NE+
Sbjct: 770 TVDVKEGSADMLKGGEVIAREMQRLDDLTSEIARSMNEMAAGAIEINNAVHEVNEITQRS 829
Query: 356 KEEITKLKENIDR 368
K+ I+ L + +++
Sbjct: 830 KQSISSLADEVEK 842
>pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655731|gb|AAF94407.1| (AE004204) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 536
Score = 97.9 bits (240), Expect = 2e-19
Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 18/266 (6%)
Query: 110 LVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASM---AEKGRQISD-N 165
+ S + + D + L+ + +M ++ A ++A A K + D +
Sbjct: 275 IASSAEETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKD 334
Query: 166 VALKVSRISETSREM---SDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARA 222
V V I S E+ +D V L E +I+++ VIS I+ QTNLLALNA+IEAARA
Sbjct: 335 VHSSVDSIRALSVELGVATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARA 394
Query: 223 GEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAI 282
G+ GRGFAVVA+ VR LA R+ S +EI+ +I +Q+ A+Q++
Sbjct: 395 GDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTASAMQKS----------- 443
Query: 283 QNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLT 342
Q L A A A +++ + + ++A + + +++++++ N++
Sbjct: 444 QALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAA 503
Query: 343 DTISGSLEKLNEVKEEITKLKENIDR 368
+S + L E E++ L +D+
Sbjct: 504 LEMSQAATYLAEESEKLADLSRQLDQ 529
>pir||T03461 methyl-accepting chemotaxis protein mcpA - Rhodobacter capsulatus
>gi|3128262|gb|AAC16114.1| (AF010496) methyl-accepting
chemoreceptor [Rhodobacter capsulatus]
Length = 881
Score = 96.3 bits (236), Expect = 4e-19
Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 7/307 (2%)
Query: 12 AALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRG 71
AAL ++D + +A R + D E + L +E + V+ ++A L+
Sbjct: 501 AALAAAEAERDRDRQEQARQEAERQERRRLRDAAEAERAAQL-QEQQLVVSRLAEALRAM 559
Query: 72 QGKKINVKDKI------ENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVN 125
+ + + E L+ ++ E+ + + S + E+
Sbjct: 560 SAGDLTARIETAFPAAYEGLRSDFNQAVTRMAELLSEIVRASGSVQSEAHQLGAASGELG 619
Query: 126 DYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAVR 185
+T +A +EE Q++ ++ A + + + E R A+
Sbjct: 620 RRTETQAASLEETAAAMNQMAASVAQALQGAREAARAVGQTRETTAAGREVVRRTLQAMT 679
Query: 186 ILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKK 245
+A+ S++I+ I VI IA QTNLLALNA +EAARAGEAGRGFAVVA VR LA RS +
Sbjct: 680 DIAQSSEQISRITSVIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSE 739
Query: 246 SAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKE 305
+A EI LI + ++ + +++ + L A I A E + + E
Sbjct: 740 AAREIAGLIATSVRQVGEGVELASGSDAALGRIEDLVSRLDALLAAIETGAGEQSAGISE 799
Query: 306 LSEGIDE 312
++ +++
Sbjct: 800 ITAAVNQ 806
>pir||H81324 probable MCP-domain signal transduction protein Cj1190c [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968623|emb|CAB73444.1| (AL139077) putative
MCP-domain signal transduction protein [Campylobacter
jejuni]
Length = 459
Score = 95.6 bits (234), Expect = 8e-19
Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 17/242 (7%)
Query: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEV----IENLEEKIGEVKLGDLGEVNELVSR 113
E L+++ + Q + K E LK + IE + + + +++ +SR
Sbjct: 97 EAYLREINTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSR 156
Query: 114 ------LNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVA 167
L N+N +++++ + + ++ + +S A E+ S D++
Sbjct: 157 TLMDLSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEV-------DSLQ 209
Query: 168 LKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGR 227
+ + + + V+ S+ I +V VI IA QTNLLALNA+IEAARAGE GR
Sbjct: 210 SAMGSLMDVVNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGR 269
Query: 228 GFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIA 287
GFAVVA+ VR+LA+R+++S EI I+ MQ++ + ++ + E +E I
Sbjct: 270 GFAVVADEVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQ 329
Query: 288 AF 289
AF
Sbjct: 330 AF 331
>pir||G64594 hemolysin secretion protein precursor - Helicobacter pylori
(strain 26695) >gi|2313716|gb|AAD07662.1| (AE000573)
hemolysin secretion protein precursor (hylB)
[Helicobacter pylori 26695]
Length = 433
Score = 94.0 bits (230), Expect = 2e-18
Identities = 71/231 (30%), Positives = 124/231 (52%), Gaps = 26/231 (11%)
Query: 77 NVKDKIENLKEVIE--NLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAG 134
N++++ + KE E NL+ +K ++ V N V ND +T A
Sbjct: 60 NLEEQSVHFKENAESVNLQGVSYSLKSQNIDGVQYFSLAKNTSCVGEYHKNDLFKTFCAS 119
Query: 135 IEEMNVQAQQ-LSDFALESASMAEKGRQISDNVALKVSRISETSRE-------MSDAVRI 186
++E AQ+ + F E+ ++ + + + +++T ++ M +A +
Sbjct: 120 LKEGLENAQESMQYFHQETGALLNAAKNGEAHSTEGLGTVNKTGQDIESLYEKMQNATSL 179
Query: 187 LAEYSKKINDIVYVIS---SIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRS 243
+++ N+I VIS IA QTNLLALNA+IEAARAGE GRGFAVVA+ VR+LA+++
Sbjct: 180 ADSLNQRSNEITQVISLIDDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKT 239
Query: 244 KKSAEEIRNLIEEMQE----------NINRVIQAIQENVRVTEEVKEAIQN 284
+K+ +EI +++ MQ+ +IN ++ +I+ +V EE+K ++N
Sbjct: 240 QKATKEIAVVVKSMQQEANDIQTNTHDINSIVSSIKGDV---EELKSTVKN 287
>gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [Treponema
denticola]
Length = 369
Score = 93.6 bits (229), Expect = 3e-18
Identities = 94/341 (27%), Positives = 153/341 (44%), Gaps = 72/341 (21%)
Query: 76 INVKDKIENLKEVIENLEEKIG---------EVKLGDLGE-----VNELVSRLNNENVKI 121
IN D+I +L E EKIG V + +GE + + S +N + I
Sbjct: 52 INGNDEITDLSEYFNQTIEKIGAAIKNVGKNSVSMEAIGEELASNMTQTASAINEISANI 111
Query: 122 AEVNDYIQTLSAGIEEMNVQAQQL--------SDFALESASMAEKGRQISDNVALKVSRI 173
V + T +A + E +Q+ + ++AS+A I + VA ++ I
Sbjct: 112 EGVKNQTLTQAASVTETAATIEQIVRTIKQLNNSIENQAASVARSTASIEEMVA-NIASI 170
Query: 174 SETSREMSDAVRILA---------------------EYSKKINDIVYVISSIASQTNLLA 212
++T + D V+ LA E S + + VI IASQTNLLA
Sbjct: 171 TQTLEKTYDVVKNLASATEDGKETIITSNSVTQKIAEESGSLMEASSVIQHIASQTNLLA 230
Query: 213 LNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENV 272
+NA+IEAA AGEAG+GFAVVA+ +R+LA+ S + I + ++ + I E++
Sbjct: 231 MNAAIEAAHAGEAGKGFAVVADEIRKLAEDSATQGKTITSTLKTLSSEI--------ESL 282
Query: 273 RVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVS 332
V+ + E F I + + +M L+E + EQ N + ++ I +I+
Sbjct: 283 SVSSKTVE------DKFSTIFNLSEQVKSMSDRLTEAMHEQENGSKEVLGAIKNIN---- 332
Query: 333 DNLNFATQLTDTISGSLEKL---NEVKEEITKLKENIDRIM 370
T + +GS E L V EE+ KL +N+ R++
Sbjct: 333 ------TVTVEVQAGSEEMLKGGEGVAEEMLKL-DNLTRMI 366
>pir||C69832 methyl-accepting chemotaxis protein homolog yhfV - Bacillus
subtilis >gi|2226258|emb|CAA74545.1| (Y14084)
hypothetical protein [Bacillus subtilis]
>gi|2633374|emb|CAB12878.1| (Z99109) similar to
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 432
Score = 93.2 bits (228), Expect = 4e-18
Identities = 74/268 (27%), Positives = 139/268 (51%), Gaps = 19/268 (7%)
Query: 74 KKINVKDKIENLKE--VIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTL 131
K I KI NL++ V+E + + + + + N L ++ + IA +
Sbjct: 160 KAIKATTKILNLEQQLVLEAFQSEYNQTRDEQEEKKNLLHQKIQETSGSIANL---FSET 216
Query: 132 SAGIEEMNVQAQQLSDFA----LESASMAEK---GRQISDNVALKVSRISETSREMSDAV 184
S ++E+ +++ +S + + S+++ EK G++ + ++++I + ++ +
Sbjct: 217 SRSVQELVDKSEGISQASKAGTVTSSTVEEKSIGGKKELEVQQKQMNKIDTSLVQIEKEM 276
Query: 185 RILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSK 244
L E +++I I +++ IA QTNLL+LNASIE+ARAGE G+GFAVVA VR+L++ +K
Sbjct: 277 VKLDEIAQQIEKIFGIVTGIAEQTNLLSLNASIESARAGEHGKGFAVVANEVRKLSEDTK 336
Query: 245 KSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVK 304
K+ + L+ IN V + I++ + E KE + + FD+I + + K
Sbjct: 337 KTVSTVSELVNNTNTQINIVSKHIKDVNELVSESKEKMTQINRLFDEIV----HSMKISK 392
Query: 305 ELSEGIDEQANSVQMLVDRIDSISKDVS 332
E S ID +Q + + +S+ VS
Sbjct: 393 EQSGKIDV---DLQAFLGGLQEVSRAVS 417
>pir||E82379 methyl-accepting chemotaxis protein VCA1088 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658535|gb|AAF96981.1| (AE004434) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 384
Score = 92.1 bits (225), Expect = 9e-18
Identities = 81/332 (24%), Positives = 157/332 (46%), Gaps = 20/332 (6%)
Query: 42 LDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKL 101
L G PQ + ++ ++V RL Q + +++ +++ LKE I+ + E + + +L
Sbjct: 44 LAGGAPQPSIVTAQPTDDV------RLSAEQQQALSLLEQV--LKENIQRVAEPLEKQRL 95
Query: 102 GDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQ 161
+N LNN + V++ ++S + + N+ A Q S+F L + K
Sbjct: 96 ----IINSSAETLNNSFFGLQRVSEEQSSVSTQLVD-NLMANQGSEFDL--MQVLPKTEA 148
Query: 162 ISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAAR 221
I + +SE S ++ +++ + ++ + S++ QTNLLALNA+IEAAR
Sbjct: 149 IIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAAR 208
Query: 222 AGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQE----NVRVTEE 277
AGEAGRGFAVVA+ VR L+ ++ +I ++ Q+ ++ + + E ++ E
Sbjct: 209 AGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMKVAQDTVDIANRTVGEMASFDMTQAIE 268
Query: 278 VKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNF 337
KE + ++ + + N ++ L + + +Q + D + + L
Sbjct: 269 SKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLTQQVREGTRALQFTDIVYQQGEYALGS 328
Query: 338 ATQLTDTISGSLEKLNEVKEEITKLKENIDRI 369
T L + SG L+ + + +L ENI+ +
Sbjct: 329 ITFLQEA-SGLLKAVQSNSRNVQQLIENIEAL 359
>pir||F81417 MCP-domain signal transduction protein Cj0019c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967524|emb|CAB72512.1| (AL139074) MCP-domain signal
transduction protein [Campylobacter jejuni]
Length = 592
Score = 88.5 bits (216), Expect = 1e-16
Identities = 88/339 (25%), Positives = 158/339 (45%), Gaps = 55/339 (16%)
Query: 61 LKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGE-VNELVSRLNN--- 116
LKKV + + N+ K NL + N++ K +LG + +N +S + N
Sbjct: 261 LKKVIMPIHTLEKLSANLASKEANLHSRL-NIDPKS---ELGQSAQYINSFISTVQNSII 316
Query: 117 ---ENVKIAEVNDY-IQTLSAGIEEM-NVQAQQLS-----------------DFALESAS 154
EN K + N ++ S +E N Q +Q+ + A ES
Sbjct: 317 EAIENAKSSHQNSQKLKNNSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIE 376
Query: 155 MAEKGRQISDNVALKVSR----ISETSREMSDAVRILAEYSKKINDIVYVISSI---ASQ 207
+ + D V L +S I+E + + + V + ++ ++I+ + +SI A Q
Sbjct: 377 NMQDMHILMDKVELTLSELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQ 436
Query: 208 TNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQA 267
TNLLALNA+IEAARAGE GRGFAVVA+ V +LAD++ KS + + +N ++Q
Sbjct: 437 TNLLALNAAIEAARAGEHGRGFAVVADEVGQLADKTSKS-------LLNINATVNTIVQQ 489
Query: 268 IQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSI 327
I +N + + + ++++ + +D+ + E N + +L I+ S Q + D+
Sbjct: 490 INDNKALMDLIHDSMKETSSKTNDLQQ---ELVNSMHKLESSIE----STQTMKDK---- 538
Query: 328 SKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENI 366
S +V D + D ++ + ++ EI + +N+
Sbjct: 539 SMEVKDKMLILGTNIDKVNELANSVKDLSCEINNISQNV 577
>pir||G71298 probable methyl-accepting chemotaxis protein (mcp2-3) - syphilis
spirochete >gi|2906251|gb|AAC04556.1| (AF047698)
putative methyl-accepting chemotaxis protein [Treponema
pallidum] >gi|3322939|gb|AAC65614.1| (AE001239)
methyl-accepting chemotaxis protein (mcp2-3) [Treponema
pallidum]
Length = 614
Score = 87.4 bits (213), Expect = 2e-16
Identities = 83/411 (20%), Positives = 179/411 (43%), Gaps = 61/411 (14%)
Query: 4 SILSLISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDE----- 58
S++ ++S+ + + D N Q I+ ++++ L G + + + +E
Sbjct: 213 SLICVLSVIVMIRIGRHLDLAN------QGILTFIQNRLSGDASAASMRVVRRNEFGFLT 266
Query: 59 ----EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRL 114
++ K F L +GK + + I E+ + + ++ ++
Sbjct: 267 QSLNKMHKSTRFFLIASRGKMARARKIANSFVRNARTSCAAINEI----ISQAHKAEDKI 322
Query: 115 NNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEK--------GRQISDN- 165
+++ I E ++Q + I+ N + D ++AS E+ + +SDN
Sbjct: 323 KHQSRTIFETQKHVQHIVGNIDRFNGHIGEQVDTVTDAASSVEQMVRNIESVTQVLSDNS 382
Query: 166 -----VALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAA 220
+ L+ + + + +D R + S+ + + VI IASQTNLLA+NASIEA
Sbjct: 383 NVIETLLLEAKLAQDATIQSADVGREVLHASEALAEAGAVIQHIASQTNLLAMNASIEAT 442
Query: 221 RAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRV-------------IQA 267
E+G+GF VVA +R LA+ + K + I ++ +++ I +V I +
Sbjct: 443 YCKESGQGFEVVASEIRRLAEDASKQGKHISAVLRDVKTEIEKVSESALAVQAQFALIFS 502
Query: 268 IQENVRVTEEV---------KEAIQNL--IAAFDDIARRANETANMVKELSEGIDEQANS 316
I +++ EEV K+++ L I +I R E + + + S+ ++E +
Sbjct: 503 ITTDIKAQEEVISQSMVEQTKDSVHVLHAIQHITEITRTLQENSGAILDNSKHVEEAMLA 562
Query: 317 VQMLVDRID----SISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLK 363
+ + ID S+ K+ +A+ +T+ + + + ++ E++ ++
Sbjct: 563 LSRITSEIDSSVSSMHKNSEQVKKYASSITEIGQKNKDSITDLVTELSNMR 613
>emb|CAA05367.1| (AJ002392) chemotactic receptor I [Leptospirillum ferrooxidans]
Length = 577
Score = 83.5 bits (203), Expect = 3e-15
Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 67/338 (19%)
Query: 26 SSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFRLKRGQGKKIN-------- 77
++++T ++ D+ GKE L +S E+L V ++ G IN
Sbjct: 235 TTSMTHNGVVVVNADLKSGKEGNEILYVSPSLIEILLPVKKEVQERFGVDINRLVGTSIH 294
Query: 78 --------VKDKIENLK--EVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDY 127
+++ + +K EV +N+E +IG LG + ++E + + +
Sbjct: 295 RFHEHPDRIREILRRIKPLEVRQNMETQIGNYFLGSTSSMIP-----DSEGKPLLYMATF 349
Query: 128 IQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSREMSDAV--- 184
+T S ++ + A++ AL + + Q +++ + ++ TS EMS +
Sbjct: 350 YETTS--MKNLQKVAEERKTRALSTVGQLDGFTQAWESLLSTLKQVFGTSVEMSKTMGGM 407
Query: 185 ---------------------RILAEYSKK-INDIVYVISSI---ASQTNLLALNASIEA 219
R + E +K+ + +IV V+S + A+QTNLLALNA+IEA
Sbjct: 408 QGTVSSALETVTSMDKTASQMRTVMEKNKEAVIEIVTVVSKVGDVAAQTNLLALNAAIEA 467
Query: 220 ARAGEAGRGFAVVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVK 279
ARAGE GRGFAVV + VR L +E++R L++ +QE +++V VT
Sbjct: 468 ARAGEHGRGFAVVGDEVRNL-------SEQVRILVQSIQEKMDQV-------STVTTNAT 513
Query: 280 EAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSV 317
+ + +D+ E + +L +G+ + ++V
Sbjct: 514 NTFDSFASVVEDVTTHIREIGQEMNQLLDGVKKMGSTV 551
>pir||D70174 methyl-accepting chemotaxis protein (mcp-3) homolog - Lyme disease
spirochete >gi|2688521|gb|AAC66954.1| (AE001161)
methyl-accepting chemotaxis protein (mcp-3) [Borrelia
burgdorferi]
Length = 735
Score = 80.0 bits (194), Expect = 4e-14
Identities = 91/407 (22%), Positives = 177/407 (43%), Gaps = 48/407 (11%)
Query: 8 LISIAALFFVSGKKDYENSSNVTSQAIINYLRDVLDGKEPQIPLGLSKEDEEVLKKVAFR 67
L+S A +F++ + ++ I++Y + D + PL + K ++ ++ +
Sbjct: 332 LLSFAIIFYLCNTFVFSLINDFNR--IVDYQKSKSDPFSLESPLEV-KYSSSIISYISSK 388
Query: 68 LKRGQGKKINVKDKI----ENLKEVIENLEEKIGEVKLGDLG-----EVNELVSRLNNEN 118
L K +KI E+L E +E +E I + D ++ + SR
Sbjct: 389 LDNLSSKSNESFEKIKFYSEDLNEYLEQIETAISNTESIDSSILVYEQLRDTFSRFEKSI 448
Query: 119 VKIAE--------VND---YIQTLSAGIEEMNVQAQQLSDFALESAS-MAEKGRQISDNV 166
V I + +ND YI +S+ EE +V D LE + +A +N+
Sbjct: 449 VDILKGFESIADPINDHNKYISEISSNFEE-SVSFFYSIDKNLEIFNKVATINSTDIENI 507
Query: 167 ALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAG 226
KV ++ ++ L + + + ++ SI++QTN+LA+NA+IEAA+AG+AG
Sbjct: 508 KSKVFDLNIVFENVNKNFADLLSQTNSLQSVNKLLVSISAQTNMLAMNAAIEAAKAGDAG 567
Query: 227 RGFAVVAENVRELADRSKKSAEEIR--------------NLIEEMQENINRVIQAIQENV 272
+ FAVVAE +R+LA S K ++ I+ + I+ + +N + + N
Sbjct: 568 KSFAVVAEEIRKLAINSGKYSKTIKDELKTVDSIIAVINSEIDTIYKNFIDIQDNVDNNF 627
Query: 273 RVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVS 332
E+V + + R +++ E N+ + + ++ S+D+
Sbjct: 628 SRHEKVDLTLAKHFKEIGEFKERYLSHDTKIRDAKNMYKEIFNNHYFISGKFNNFSQDLK 687
Query: 333 D------NLNFATQL---TDTISGSLEKLNEVKEEITKLKENIDRIM 370
+ NL+ + L + + S +K+ + KE I K+ + I I+
Sbjct: 688 EFKVSKMNLDAVSSLQEYSSLVKSSKDKILKTKELIQKINDEIKDIL 734
>pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) - syphilis
spirochete >gi|1354776|gb|AAB01990.1| (U56999) MCP-1
[Treponema pallidum] >gi|3322296|gb|AAC65035.1|
(AE001189) methyl-accepting chemotaxis protein (mcp1)
[Treponema pallidum]
Length = 597
Score = 72.2 bits (174), Expect = 8e-12
Identities = 75/366 (20%), Positives = 159/366 (42%), Gaps = 50/366 (13%)
Query: 29 VTSQAIINYLRDVLDGKEPQ-IPLGLSKEDEEV------LKKVAFRLKRGQGKKINVKDK 81
VT A+I + + VLDG+ Q + LS + + +++ A L + N+ +
Sbjct: 209 VTQTALIEW-QVVLDGRTAQRLSQDLSSSSQRLERLFGEVRRTAQELSHNEQ---NLTET 264
Query: 82 IENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQ 141
++ ++V+++L G V+ +L E S+ N + L + + E++ Q
Sbjct: 265 MDRAEQVVQDLTRYTGAVR-EELAVQGEGFSQTRVVN----------EELGSSLRELDEQ 313
Query: 142 AQQLSDFALESASMAEKGRQISDNVALKVSRI----------SETSRE----MSDAVRIL 187
+ + A E+ E+ N+ K S + S+T +E M + + +
Sbjct: 314 MEAQGERAREALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGKECVGRMMEVIEEI 373
Query: 188 AEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVRELADRSKKSA 247
S+ + ++ I+ +TNLLA+NA+IEAA AG+AGRGFAVVA +R LA R+ +
Sbjct: 374 TSRSRGLAVTNALVVDISGRTNLLAMNAAIEAAHAGDAGRGFAVVAGEIRSLAARTAAES 433
Query: 248 EEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIARRANETANMVKELS 307
+++E++ V E A + +F DI + + + ++ ++S
Sbjct: 434 GATGKMLKEIE--------------AVIGESGHASAGVAQSFTDIRGKVDGFSTILADIS 479
Query: 308 EGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVKEEITKLKENID 367
+ + V+R+ +++ + + + + + + K+ ++
Sbjct: 480 GAVQVVGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCAEVE 539
Query: 368 RIMGEI 373
++G +
Sbjct: 540 TMIGNV 545
>pir||A70172 methyl-accepting chemotaxis protein (mcp-1) homolog - Lyme disease
spirochete >gi|2688501|gb|AAC66945.1| (AE001159)
methyl-accepting chemotaxis protein (mcp-1) [Borrelia
burgdorferi]
Length = 389
Score = 71.8 bits (173), Expect = 1e-11
Identities = 64/300 (21%), Positives = 137/300 (45%), Gaps = 24/300 (8%)
Query: 61 LKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNENVK 120
+KK +F K+ + +N+ + + N K+ + E K V E++ +
Sbjct: 1 MKKFSFFKKKKKAVDLNLLNVVGNDKKDLSTYEYK---------APVKEMLKGFYHTKAS 51
Query: 121 IAEVNDYIQTLSAGIEEMN-VQAQQLSDFALESASMAEKGRQISDNVALKVSRISETSRE 179
I+ TL G E + + ++ DF ++ E + +++ S + + ++E
Sbjct: 52 IS-------TLKVGFESLQRILFSEIEDFDQIFSTFVEMTNNARNQISVIFSDLGKNNKE 104
Query: 180 MSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAENVREL 239
+ + + I + IS+ TN+++LNA +EAARA E G+GF+VVA+ ++ L
Sbjct: 105 KLNQI---SSVIVGIQGSLETISNFLGATNMISLNAKLEAARAKEYGKGFSVVADEIKRL 161
Query: 240 ADRSK--KSAEEIRNLIEEMQENINRVIQAIQENV-RVTEEVKEAIQNLIAAFDDIARRA 296
+D++K + ++ + E ++ I+ ++ +Q ++ + E+ E + L + F +R
Sbjct: 162 SDQAKGVMNMISVKEIEEVSKDLISHNLKDLQIDIDKFFAEILEQLNYLESIFKRFSRSQ 221
Query: 297 NETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNEVK 356
E +++++ L E ID D + + N F +L IS +N ++
Sbjct: 222 EEFSSLIESL-ESIDANMAYYSRNCDSLIGSDTFMLSNDEFLKELEFIISDQFSWINNLR 280
>gb|AAC72233.1| (AF092090) cp151 [Rattus norvegicus]
Length = 751
Score = 70.2 bits (169), Expect = 3e-11
Identities = 85/378 (22%), Positives = 164/378 (42%), Gaps = 71/378 (18%)
Query: 53 LSKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVS 112
L ++ +E L ++ +L + Q + + ++E L+ + L+ +L EV + S
Sbjct: 364 LLQDKDERLNELEKKLTQVQCLFLEKETELEKLQSTTKELD--------ANLQEVRQSTS 415
Query: 113 RLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLS---DFALESASMAEKGRQISDNVALK 169
+++NE ++ +E+ ++L E++ V Q LS D A SA+ E + +N L+
Sbjct: 416 KIDNEGLR-SEIQKLKESLEEAREQLRVSDQNLSQCKDEAHLSANNLEDAHRKLENCLLQ 474
Query: 170 VSR------------------ISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLL 211
R SET E + + L E S ++N+ +SS + +LL
Sbjct: 475 DKRKDDVIKDLQSQLQKLQKESSETEEERKNNRQQLLELSSELNEGQRRLSSAEKEKSLL 534
Query: 212 ALNASIEAARAGEAGRGFAVVAENVRELADRSKKSAEEI---RNLIEEMQENINR----- 263
E + E G V + REL + K +E+ + L+EE +E + +
Sbjct: 535 QKTLDEEEKKIDELLHGAKVSEQKQRELTNSLSKLQDELAETKRLLEEKREQLRKSKDQE 594
Query: 264 -----VIQAI-----------QENVRVTEEVKEAIQNLIAA----FDDIARRANETANMV 303
I+A+ +E +R EE KE +Q +++ D + N + ++
Sbjct: 595 KALEEEIEALRQESKKKEKMAKEQLRKLEEEKENLQAELSSCSSQLDSSINKYNNSQKVI 654
Query: 304 KELSEGIDEQANSVQMLVDRIDS-ISKDVSDNLNFATQLT------------DTISGSLE 350
+EL+ I Q +S+ +L ++DS I K+ + N ++ T D ++ +LE
Sbjct: 655 QELNTEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKETYEELLRKSGTCQDDLTQALE 714
Query: 351 KLNEVKEEITKLKENIDR 368
KL + E L+ N+ +
Sbjct: 715 KLTQATSETKSLQRNLQQ 732
>gb|AAC69932.2| (AC005700) putative myosin heavy chain [Arabidopsis thaliana]
Length = 1269
Score = 69.1 bits (166), Expect = 7e-11
Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 46/343 (13%)
Query: 54 SKEDEEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKL------------ 101
+KE E L++VA LKR + + ++KD++ + KE +E E+K G++++
Sbjct: 95 AKELELELERVAGELKRYESENTHLKDELLSAKEKLEETEKKHGDLEVVQKKQQEKIVEG 154
Query: 102 -----GDLGEVNELVSRLNNENVKIAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMA 156
L + + + + ++ ++ EV + L +E + +L + SA A
Sbjct: 155 EERHSSQLKSLEDALQSHDAKDKELTEVKEAFDALGIELESSRKKLIELEEGLKRSAEEA 214
Query: 157 EKGRQISDNVALKVSRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTN-LLALNA 215
+K ++ A S+ + E S+ ++ E +K++ + + + + N ++ N
Sbjct: 215 QKFEELHKQSASHADSESQKALEFSELLKSTKESAKEMEEKMASLQQEIKELNEKMSENE 274
Query: 216 SIEAARAGEAGRGFAVVAE----NVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQEN 271
+EAA AG AV E R L K S+ E LI+E+ + + Q
Sbjct: 275 KVEAALKSSAGELAAVQEELALSKSRLLETEQKVSSTEA--LIDELTQELE---QKKASE 329
Query: 272 VRVTEEVKEAIQNLIAAFDDIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDV 331
R EE+ +Q+L A + + +E + +L+E + E+ + ++S+SKD
Sbjct: 330 SRFKEELS-VLQDLDAQTKGLQAKLSEQEGINSKLAEELKEK--------ELLESLSKDQ 380
Query: 332 SDNLNFATQLTDTISGSLEKLNEVKEEITKLKENIDRIMGEIS 374
+ L A EKL EV +E L+ N+ + ++
Sbjct: 381 EEKLRTAN----------EKLAEVLKEKEALEANVAEVTSNVA 413
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.309 0.128 0.317
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105626485
Number of Sequences: 2977
Number of extensions: 4071203
Number of successful extensions: 32623
Number of sequences better than 1.0e-10: 276
Number of HSP's better than 0.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 30741
Number of HSP's gapped (non-prelim): 794
length of query: 374
length of database: 189,106,746
effective HSP length: 70
effective length of query: 304
effective length of database: 147,212,656
effective search space: 44752647424
effective search space used: 44752647424
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 165 (68.7 bits)