BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1027 (cheW) DE:purine-binding chemotaxis protein (cheW)
(145 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75003 purine-binding chemotaxis protein (chew) PAB1027 - P... 282 9e-76
pir||A71160 probable purine-binding chemotaxis protein (cheW) - ... 275 2e-73
gi|11498649 purine-binding chemotaxis protein (cheW) [Archaeoglo... 131 3e-30
sp|Q60251|CHEW_RHOSH CHEMOTAXIS PROTEIN CHEW >gi|7442994|pir||S7... 113 7e-25
pir||D72341 purine-binding chemotaxis protein - Thermotoga marit... 111 5e-24
sp|Q52881|CHEW_RHIME CHEMOTAXIS PROTEIN CHEW >gi|2120801|pir||S6... 103 8e-22
pir||S47260 cheW protein - Rhodobacter sphaeroides 100 9e-21
gb|AAC08070.1| (AF031898) CheW [Pseudomonas putida] 99 2e-20
gb|AAF32421.1| (AF069392) chemotaxis protein CheW [Vibrio paraha... 98 5e-20
gb|AAG34157.1|AF312878_2 (AF312878) chemotaxis protein CheW2 [Si... 98 5e-20
dbj|BAB06688.1| (AP001517) modulation of CheA activity in respon... 98 6e-20
sp|P07365|CHEW_ECOLI CHEMOTAXIS PROTEIN CHEW >gi|72605|pir||QREC... 97 8e-20
pir||E82122 purine-binding chemotaxis protein CheW VC2059 [impor... 96 2e-19
pir||T46620 chemotaxis protein cheW [imported] - Pseudomonas aer... 96 2e-19
sp|P06110|CHEW_SALTY CHEMOTAXIS PROTEIN CHEW >gi|79056|pir||A261... 95 3e-19
gb|AAB53941.1| (U92493) chemotaxis protein [Burkholderia pseudom... 93 1e-18
pir||B83624 probable purine-binding chemotaxis protein PA0177 [i... 93 1e-18
sp|O87715|CHEW_CAUCR CHEMOTAXIS PROTEIN CHEW >gi|3387364|emb|CAA... 92 3e-18
sp|Q56311|CHEW_THEMA CHEMOTAXIS PROTEIN CHEW >gi|7443004|pir||C7... 90 8e-18
sp|P21821|CHEW_ENTAE CHEMOTAXIS PROTEIN CHEW >gi|95554|pir||B323... 88 5e-17
pir||A82380 purine-binding chemotaxis protein CheW VCA1093 [impo... 88 5e-17
dbj|BAB05431.1| (AP001512) modulation of CheA activity in respon... 87 7e-17
pir||G70138 purine-binding chemotaxis protein (cheW-1) homolog -... 85 3e-16
sp|O83453|CHEW_TREPA CHEMOTAXIS PROTEIN CHEW >gi|7443002|pir||G7... 80 1e-14
sp|P39802|CHEW_BACSU CHEMOTAXIS PROTEIN CHEW >gi|7442993|pir||C6... 80 1e-14
pir||G64568 purine-binding chemotaxis protein - Helicobacter pyl... 80 1e-14
gb|AAG19396.1| (AE005033) chemotaxis protein; CheW1 [Halobacteri... 79 2e-14
gb|AAD01689.1| (AF021091) chemotaxis protein CheW [Helicobacter ... 79 3e-14
dbj|BAA83929.1| (AB024556) CHEV [Bacillus halodurans] 79 3e-14
pir||E70183 purine-binding chemotaxis protein (cheW-3) homolog -... 78 3e-14
gb|AAC33469.1| (AF074950) CheW [Treponema denticola] 78 3e-14
gb|AAB81649.1| (U61498) CheW [Borrelia burgdorferi] 78 3e-14
pir||A44130 chemotaxis protein CheW - Bacillus subtilis 78 4e-14
pir||B82206 probable purine-binding chemotaxis protein Chew VC14... 78 4e-14
pir||A81447 chemotaxis protein Cj0283c [imported] - Campylobacte... 78 6e-14
gb|AAD13199.1| (AF096317) putative chemotaxis protein CheW [Desu... 76 2e-13
gb|AAB96836.1| (U34384) CheW [Borrelia burgdorferi] 73 1e-12
pir||B71335 probable purine-binding chemotaxis protein (cheW-1) ... 73 2e-12
gb|AAD45221.1|AF105017_2 (AF105017) chemotaxis protein CheW [Tre... 73 2e-12
pir||A71865 histidine kinase (mcp coupling protein) - Helicobact... 71 6e-12
pir||C81447 chemotaxis protein (EC 2.7.3.-) Cj0285c [imported] -... 71 6e-12
dbj|BAB05981.1| (AP001514) modulation of CheA activity in respon... 71 6e-12
pir||T45019 chemotaxis protein, CheWIII [imported] - Rhodobacter... 70 1e-11
pir||D70170 purine-binding chemotaxis protein (cheW-2) homolog -... 70 1e-11
sp|P37599|CHEV_BACSU CHEMOTAXIS CHEV PROTEIN >gi|1075832|pir||A5... 69 2e-11
pir||B82380 purine-binding chemotaxis protein CheW VCA1094 [impo... 69 2e-11
>pir||A75003 purine-binding chemotaxis protein (chew) PAB1027 - Pyrococcus
abyssi (strain Orsay) >gi|5458977|emb|CAB50463.1|
(AJ248288) purine-binding chemotaxis protein (cheW)
[Pyrococcus abyssi]
Length = 145
Score = 282 bits (715), Expect = 9e-76
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK
Sbjct: 1 MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
Query: 61 LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK
Sbjct: 61 LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
Query: 121 GIAKINNGERLLIMLDLDKLIGESF 145
GIAKINNGERLLIMLDLDKLIGESF
Sbjct: 121 GIAKINNGERLLIMLDLDKLIGESF 145
>pir||A71160 probable purine-binding chemotaxis protein (cheW) - Pyrococcus
horikoshii >gi|3256883|dbj|BAA29566.1| (AP000002) 145aa
long hypothetical purine-binding chemotaxis protein
(cheW) [Pyrococcus horikoshii]
Length = 145
Score = 275 bits (695), Expect = 2e-73
Identities = 141/145 (97%), Positives = 143/145 (98%)
Query: 1 MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
M EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK
Sbjct: 1 MGEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
Query: 61 LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
LLGYYDD DLSNKKIIIAEVNGEIVGVIVD+VSDVITLTEDQIEQPPKTLAS+VDMKAIK
Sbjct: 61 LLGYYDDGDLSNKKIIIAEVNGEIVGVIVDSVSDVITLTEDQIEQPPKTLASRVDMKAIK 120
Query: 121 GIAKINNGERLLIMLDLDKLIGESF 145
GIAKINNGERLLIMLDLDKLIGESF
Sbjct: 121 GIAKINNGERLLIMLDLDKLIGESF 145
>gi|11498649 purine-binding chemotaxis protein (cheW) [Archaeoglobus fulgidus]
>gi|7442997|pir||D69380 purine-binding chemotaxis
protein (cheW) homolog - Archaeoglobus fulgidus
>gi|2649556|gb|AAB90206.1| (AE001031) purine-binding
chemotaxis protein (cheW) [Archaeoglobus fulgidus]
Length = 160
Score = 131 bits (327), Expect = 3e-30
Identities = 66/140 (47%), Positives = 98/140 (69%), Gaps = 2/140 (1%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+QV+ F LGDE + ++IS+VREI ITR+PNAPDFVEGVINLRGQITT+INL+K G
Sbjct: 16 VQVIVFNLGDERYGVDISQVREIIRPTQITRIPNAPDFVEGVINLRGQITTIINLRKRFG 75
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
+N +II+ E + ++G++VD V++V L+ IE P + ++ + K +KG+
Sbjct: 76 MEPKPIDNNTRIIVVEFDNAVIGMMVDTVNEVKYLSTADIEALPNIITAREEAKFLKGVG 135
Query: 124 KINNGERLLIMLDLDKLIGE 143
K+ +G LLIM+DL+K++ E
Sbjct: 136 KLPDG--LLIMIDLNKVLSE 153
>sp|Q60251|CHEW_RHOSH CHEMOTAXIS PROTEIN CHEW >gi|7442994|pir||S70181 cheW protein -
Rhodobacter sphaeroides >gi|7532760|emb|CAB87135.1|
(X80205) chemotaxis scaffold protein [Rhodobacter
sphaeroides]
Length = 152
Score = 113 bits (281), Expect = 7e-25
Identities = 57/133 (42%), Positives = 90/133 (66%), Gaps = 3/133 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+VVAFR+G +EFC++I VREI+ P T +P+AP ++ GVINLRG + +INL + LG
Sbjct: 12 EVVAFRIGSQEFCIDIRAVREIRSWTPTTILPHAPSYIIGVINLRGSVVPIINLAERLGL 71
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
E + III V G++VG++VDAVSD++TL ++ PK +AS+ + ++G+
Sbjct: 72 GSLEPEARHVIIITVVEGQVVGLLVDAVSDILTLPPSSVQPMPK-IASETTLSFVRGVIT 130
Query: 125 INNGERLLIMLDL 137
++ +R+L +LDL
Sbjct: 131 LD--QRMLRLLDL 141
>pir||D72341 purine-binding chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981243|gb|AAD35800.1|AE001743_2 (AE001743)
purine-binding chemotaxis protein [Thermotoga maritima]
Length = 152
Score = 111 bits (274), Expect = 5e-24
Identities = 58/139 (41%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
E++VV F+LG++ F ++I KV I E+ I VP +++EGV+NLRG+I V+NL+K
Sbjct: 4 ELKVVTFKLGNQVFGVDIMKVESIVEVEKIVPVPETAEYIEGVMNLRGKIIPVVNLRKKF 63
Query: 63 GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
D ED KII++ V ++G +VD VS+V+TLTE IEQPP+ LA K I G+
Sbjct: 64 KMPDMEDKKRAKIIVSMVKNTLIGFLVDDVSEVLTLTESDIEQPPQNLAGK-GKNYILGL 122
Query: 123 AKINNGERLLIMLDLDKLI 141
AK+ + ++I+L++++++
Sbjct: 123 AKVR--DDIVIILNIEEVL 139
>sp|Q52881|CHEW_RHIME CHEMOTAXIS PROTEIN CHEW >gi|2120801|pir||S61835 cheW protein -
Rhizobium meliloti >gi|534838|gb|AAA86675.1| (U13166)
CheW [Sinorhizobium meliloti]
Length = 155
Score = 103 bits (255), Expect = 8e-22
Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 3/136 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+++AFR+GD+EFC+ I VREI+ P T +P+AP +V GVINLRG + +++ LG
Sbjct: 14 ELIAFRVGDQEFCVNIMSVREIRGWTPATPMPHAPAYVLGVINLRGAVLPIVDFSARLGM 73
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
E II+A+V +VG++VDAVSD++T+++ I QP +AS + +G+
Sbjct: 74 KAAEPTVRHVIIVAQVKSRVVGLLVDAVSDILTVSDRDI-QPTPDIASDFERSFARGVLA 132
Query: 125 INNGERLLIMLDLDKL 140
I R++ +++LD +
Sbjct: 133 IEG--RMICLVELDSV 146
>pir||S47260 cheW protein - Rhodobacter sphaeroides
Length = 131
Score = 100 bits (246), Expect = 9e-21
Identities = 51/123 (41%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
Query: 15 EFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYYDDEDLSNKK 74
EFC++I VREI+ P T +P+AP ++ GVINLRG + +INL + LG E +
Sbjct: 1 EFCIDIRAVREIRSWTPTTILPHAPSYIIGVINLRGSVVPIINLAERLGLGSLEPEARHV 60
Query: 75 IIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAKINNGERLLIM 134
III V G++VG++VDAVSD++TL ++ PK +AS+ + ++G+ ++ +R+L +
Sbjct: 61 IIITVVEGQVVGLLVDAVSDILTLPPSSVQPMPK-IASETTLSFVRGVITLD--QRMLRL 117
Query: 135 LDL 137
LDL
Sbjct: 118 LDL 120
>gb|AAC08070.1| (AF031898) CheW [Pseudomonas putida]
Length = 159
Score = 99.5 bits (244), Expect = 2e-20
Identities = 52/140 (37%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+Q V FRL +E + + + +V+E+ I VP AP +V G+INLRG + TVI+ ++ G
Sbjct: 14 LQWVTFRLDNESYGINVMQVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTRQRFG 73
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
E N +I+I E + ++VG++VD+V++V+ L + +IE P + ++ K I+G+
Sbjct: 74 LMPTEVTDNTRIVIIEADKQVVGILVDSVAEVVYLRQSEIETAP-NVGNEESAKFIQGVC 132
Query: 124 KINNGERLLIMLDLDKLIGE 143
NGE LLI+++LDK++ E
Sbjct: 133 N-KNGE-LLILVELDKMMTE 150
>gb|AAF32421.1| (AF069392) chemotaxis protein CheW [Vibrio parahaemolyticus]
Length = 164
Score = 97.9 bits (240), Expect = 5e-20
Identities = 49/138 (35%), Positives = 87/138 (62%), Gaps = 3/138 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+Q V F+L +E + + + +VRE+ I VP APD+V G+INLRG + TVI+ + G
Sbjct: 19 LQWVTFQLEEETYGINVMQVREVLRYTEIAPVPGAPDYVLGIINLRGNVVTVIDTRSRFG 78
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
+ E N +II+ E +++G++VD+V++V+ L +I+ P ++ + K I+G++
Sbjct: 79 LMEGEVTDNTRIIVIESERQVIGILVDSVAEVVYLRSSEIDTTP-SVGTDESAKFIQGVS 137
Query: 124 KINNGERLLIMLDLDKLI 141
N +LLI++DL+KL+
Sbjct: 138 --NRDGKLLILVDLNKLL 153
>gb|AAG34157.1|AF312878_2 (AF312878) chemotaxis protein CheW2 [Sinorhizobium meliloti]
Length = 154
Score = 97.9 bits (240), Expect = 5e-20
Identities = 47/140 (33%), Positives = 87/140 (61%), Gaps = 3/140 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+++V+F LG++EFC++I +REI+ P+T +P+ P +V G+INLRG + VI++ LG
Sbjct: 12 LEIVSFHLGEQEFCIDIMAIREIRGWAPVTPMPHTPPYVLGLINLRGAVIPVIDMACRLG 71
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
E II+ ++NG++VG++V+ VSD++T+ + + QP + + +GI
Sbjct: 72 MKMTEPSERSAIIVTDINGKLVGLLVEQVSDMMTIRSEDL-QPAPEIIPEAQRAFCRGIV 130
Query: 124 KINNGERLLIMLDLDKLIGE 143
+ + ++ L+LD +I E
Sbjct: 131 ALE--KSMVCFLNLDTVIAE 148
>dbj|BAB06688.1| (AP001517) modulation of CheA activity in response to attractants
(chemotaxis protein) [Bacillus halodurans]
Length = 155
Score = 97.5 bits (239), Expect = 6e-20
Identities = 47/139 (33%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
+++++ F+LGDEE+ +E+ ++ I+ M P+TR+P P +V GV+NLRG IT VINL+
Sbjct: 11 DLKLIVFQLGDEEYAIEVDYIQSIERMQPVTRIPGTPSYVIGVMNLRGVITPVINLRARF 70
Query: 63 GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
G + +I++ +G +G +VD +DV+ + ++IE P+ + V ++G+
Sbjct: 71 GLPAKAHDDSTRILVIADDGVEIGFVVDGANDVVDVPAEKIEPTPEVVGG-VQEDYLRGV 129
Query: 123 AKINNGERLLIMLDLDKLI 141
K +RL +L+L+K+I
Sbjct: 130 VK--EEDRLFTLLNLEKVI 146
>sp|P07365|CHEW_ECOLI CHEMOTAXIS PROTEIN CHEW >gi|72605|pir||QRECCW purine binding
chemotaxis protein cheW - Escherichia coli
>gi|145520|gb|AAA23565.1| (M13463) cheW peptide
[Escherichia coli] >gi|1736540|dbj|BAA15703.1| (D90830)
Chemotaxis protein CheW [Escherichia coli]
>gi|1736546|dbj|BAA15708.1| (D90831) Chemotaxis protein
CheW [Escherichia coli] >gi|1788196|gb|AAC74957.1|
(AE000282) positive regulator of CheA protein activity
[Escherichia coli K12]
Length = 167
Score = 97.1 bits (238), Expect = 8e-20
Identities = 48/137 (35%), Positives = 87/137 (63%), Gaps = 3/137 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+ + F LGDEE+ ++I KV+EI+ +TR+ N P F++GV NLRG I +++L+
Sbjct: 18 EFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKFSQ 77
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
D + N +I+ + +VG++VD VSDV++LT +QI P+ A + + + G+
Sbjct: 78 VDVDYNDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAPE-FAVTLSTEYLTGLGA 136
Query: 125 INNGERLLIMLDLDKLI 141
+ G+R+LI+++++KL+
Sbjct: 137 L--GDRMLILVNIEKLL 151
>pir||E82122 purine-binding chemotaxis protein CheW VC2059 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656605|gb|AAF95205.1| (AE004280) purine-binding
chemotaxis protein CheW [Vibrio cholerae]
Length = 174
Score = 96.0 bits (235), Expect = 2e-19
Identities = 48/138 (34%), Positives = 85/138 (60%), Gaps = 3/138 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+Q V F+L +E + + + +VRE+ I VP APD+V G+INLRG + TVI+ + G
Sbjct: 29 LQWVTFQLEEETYGINVMQVREVLRYTEIAPVPGAPDYVLGIINLRGNVVTVIDTRSRFG 88
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
E N +II+ E +++G++VD+V++V+ L +I+ P ++ + K I+G++
Sbjct: 89 LMQGEITDNTRIIVIESERQVIGILVDSVAEVVYLRSSEIDSTP-SVGTDESSKFIQGVS 147
Query: 124 KINNGERLLIMLDLDKLI 141
N +LLI++DL+K +
Sbjct: 148 --NRDGKLLILVDLNKFL 163
>pir||T46620 chemotaxis protein cheW [imported] - Pseudomonas aeruginosa
>gi|11351767|pir||D83461 probable purine-binding
chemotaxis protein PA1464 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|3721576|dbj|BAA33555.1|
(AB012767) CheW [Pseudomonas aeruginosa]
>gi|9947417|gb|AAG04853.1|AE004576_2 (AE004576) probable
purine-binding chemotaxis protein [Pseudomonas
aeruginosa]
Length = 159
Score = 95.6 bits (234), Expect = 2e-19
Identities = 51/140 (36%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+Q V FRL +E + + + +V+E+ I VP AP +V G+INLRG + TVI+ ++ G
Sbjct: 14 LQWVTFRLDNESYGINVMQVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTRQRFG 73
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
N +I+I E + ++VG++VD+V++V+ L + +IE P + ++ K I+G+
Sbjct: 74 LDPAPVSDNTRIVIIEADKQVVGILVDSVAEVVYLKQSEIETAP-NVGNEESAKFIQGVC 132
Query: 124 KINNGERLLIMLDLDKLIGE 143
NGE LLI+++LDK++ E
Sbjct: 133 N-KNGE-LLILVELDKMMTE 150
>sp|P06110|CHEW_SALTY CHEMOTAXIS PROTEIN CHEW >gi|79056|pir||A26143 chemotaxis protein
cheW - Salmonella typhimurium >gi|153906|gb|AAA27036.1|
(J02656) CheW protein [Salmonella typhimurium]
Length = 167
Score = 95.2 bits (233), Expect = 3e-19
Identities = 49/137 (35%), Positives = 87/137 (62%), Gaps = 3/137 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+ + F LG+EE+ ++I KV+EI+ +TR+ N P F++GV NLRG I +++L+
Sbjct: 18 EFLVFTLGNEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRVKFCE 77
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
D E N +I+ + +VG++VD VSDV++LT +QI P+ A + + + G+
Sbjct: 78 GDVEYDDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAPE-FAVTLSTEYLTGLGA 136
Query: 125 INNGERLLIMLDLDKLI 141
+ GER+LI+++++KL+
Sbjct: 137 L--GERMLILVNIEKLL 151
>gb|AAB53941.1| (U92493) chemotaxis protein [Burkholderia pseudomallei]
Length = 175
Score = 93.2 bits (228), Expect = 1e-18
Identities = 50/137 (36%), Positives = 85/137 (61%), Gaps = 3/137 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+ + F LGDEE+ ++I KV+EI+ +TR+ NAPDF++GVINLRG I +++++
Sbjct: 29 EFLVFTLGDEEYGIDILKVQEIRGYDSVTRIANAPDFIKGVINLRGIIVPIVDMRIKFHL 88
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
E +II V +VG++VD VSDV+TL+ +QI P + + + G+
Sbjct: 89 GRVEYDHQTVVIILNVAHRVVGMVVDGVSDVLTLSTEQI-MPAPEFGGVLTTEYLTGLGT 147
Query: 125 INNGERLLIMLDLDKLI 141
++ R+LI++D++KL+
Sbjct: 148 VDG--RMLILMDIEKLM 162
>pir||B83624 probable purine-binding chemotaxis protein PA0177 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946010|gb|AAG03567.1|AE004455_8 (AE004455) probable
purine-binding chemotaxis protein [Pseudomonas
aeruginosa]
Length = 161
Score = 93.2 bits (228), Expect = 1e-18
Identities = 53/137 (38%), Positives = 85/137 (61%), Gaps = 3/137 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+ + F LG EE+ ++I +V+EI+ +T + NAP F++GVINLRG I +++L+
Sbjct: 15 EYLTFTLGREEYAIDILRVQEIRGYDQVTAIANAPPFIKGVINLRGAIVPIVDLRIKFHL 74
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
+ +II + IVGV+VD+VSDVI L D I PP+ AS D + + G+A
Sbjct: 75 AEVTYDPFTVVIILNIGRRIVGVVVDSVSDVIALGGDAIRPPPEFGAS-FDTEYLLGLA- 132
Query: 125 INNGERLLIMLDLDKLI 141
GER+LI++D+++L+
Sbjct: 133 -TAGERMLILVDIERLM 148
>sp|O87715|CHEW_CAUCR CHEMOTAXIS PROTEIN CHEW >gi|3387364|emb|CAA07178.1| (AJ006687) CheW
[Caulobacter crescentus]
Length = 155
Score = 92.1 bits (225), Expect = 3e-18
Identities = 46/139 (33%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
++++FR+G++E+C++I VREI+ P T +P +P ++ GVINLRG + +++L LG
Sbjct: 14 ELISFRVGEQEYCVDIMAVREIRGWSPATTLPQSPGYMRGVINLRGAVLPIMDLACRLGM 73
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
E I+ + VG++VDAVSD++++ +D I QP +A ++GI
Sbjct: 74 PVIEPTVRSVFIVVKAGDRTVGLLVDAVSDILSINDDMI-QPTPDVACDAVRSFVRGIIS 132
Query: 125 INNGERLLIMLDLDKLIGE 143
I R++ + LD+++ E
Sbjct: 133 IEG--RMISEISLDRILPE 149
>sp|Q56311|CHEW_THEMA CHEMOTAXIS PROTEIN CHEW >gi|7443004|pir||C72346 purine-binding
chemotaxis protein - Thermotoga maritima (strain MSB8)
>gi|940148|gb|AAA96388.1| (U30501) CheW [Thermotoga
maritima] >gi|4981224|gb|AAD35783.1|AE001741_16
(AE001741) purine-binding chemotaxis protein [Thermotoga
maritima]
Length = 151
Score = 90.5 bits (221), Expect = 8e-18
Identities = 55/143 (38%), Positives = 82/143 (56%), Gaps = 6/143 (4%)
Query: 1 MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
+ E +V++F + ++ ++ + + E IT VP + FVEGVINLRG+I V+NL K
Sbjct: 8 LKEFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAK 67
Query: 61 LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
+LG DE K II+A VG +VD V V+ +TE+Q++ T S K K
Sbjct: 68 ILGISFDEQ-KMKSIIVARTKDVEVGFLVDRVLGVLRITENQLD---LTNVSDKFGKKSK 123
Query: 121 GIAKINNGERLLIMLDLDKLIGE 143
G+ K + RL+I LD+DK+I E
Sbjct: 124 GLVKTDG--RLIIYLDIDKIIEE 144
>sp|P21821|CHEW_ENTAE CHEMOTAXIS PROTEIN CHEW >gi|95554|pir||B32302 chemotaxis protein
cheW - Enterobacter aerogenes >gi|148348|gb|AAA24796.1|
(M26411) cheW [Enterobacter aerogenes]
Length = 165
Score = 87.8 bits (214), Expect = 5e-17
Identities = 47/133 (35%), Positives = 80/133 (59%), Gaps = 4/133 (3%)
Query: 9 FRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYYDDE 68
F LG+EE+ ++I KV++I+ +TR+ N PDF++GV NLRG I +I+L+
Sbjct: 22 FTLGNEEYGIDILKVQKIRGYDQVTRIANTPDFIKGVTNLRGVIVPIIDLRVKYAQQGVS 81
Query: 69 DLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAKINNG 128
N +I+ +VG++VD VSDV++LT +QI P+ A + + + G+ +
Sbjct: 82 YDENTVVIVLNFGQRVVGIVVDGVSDVLSLTAEQIRPAPE-FAVTMATEYLTGLGALG-- 138
Query: 129 ERLLIMLDLDKLI 141
LLI++D++KL+
Sbjct: 139 -ALLILVDIEKLL 150
>pir||A82380 purine-binding chemotaxis protein CheW VCA1093 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658539|gb|AAF96985.1| (AE004434) purine-binding
chemotaxis protein CheW [Vibrio cholerae]
Length = 153
Score = 87.8 bits (214), Expect = 5e-17
Identities = 46/141 (32%), Positives = 92/141 (64%), Gaps = 4/141 (2%)
Query: 1 MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
M + + ++F L DEE+ + I +VRE++ P+ +PNAP FV G++++RG+ +++LK+
Sbjct: 1 MMQREFLSFVLDDEEYGIPILEVREVRGWSPVRILPNAPPFVIGLLDIRGEYIPIVDLKR 60
Query: 61 LLGYYDDE-DLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAI 119
LG E + + ++I N + +G+IVDAV++V L+E +I+ P ++++ + + +
Sbjct: 61 RLGLVPVEINATTVVVVINAANQQPLGLIVDAVAEVYALSEQEIKHAP-SISTVIGNQYV 119
Query: 120 KGIAKINNGERLLIMLDLDKL 140
KGIA + + + L+++D+D L
Sbjct: 120 KGIAAVKS--KHLVLIDIDAL 138
>dbj|BAB05431.1| (AP001512) modulation of CheA activity in response to attractants
(chemotaxis protein) [Bacillus halodurans]
Length = 298
Score = 87.4 bits (213), Expect = 7e-17
Identities = 45/139 (32%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
E++++ F +G E F + + KVREI + +P+T VPN+ VEG+I LR ++ ++++L K+L
Sbjct: 12 ELEIIIFTVGKETFAMNVMKVREIIQPIPVTSVPNSHPHVEGLIRLRDEVLSLVDLYKVL 71
Query: 63 GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
G E+ + K I+ E+N V V+ VS++ ++ IE+P T S+ + G+
Sbjct: 72 GELRAEEATEDKFIVGELNRMKVAFRVEKVSNIHRISWSDIEKP--TDLSQGLEGLVTGV 129
Query: 123 AKINNGERLLIMLDLDKLI 141
K++ ++L+++LD +K++
Sbjct: 130 VKVD--DKLILLLDFEKIV 146
>pir||G70138 purine-binding chemotaxis protein (cheW-1) homolog - Lyme disease
spirochete >gi|2688217|gb|AAC66698.1| (AE001138)
purine-binding chemotaxis protein (cheW-1) [Borrelia
burgdorferi]
Length = 176
Score = 85.0 bits (207), Expect = 3e-16
Identities = 44/149 (29%), Positives = 87/149 (57%), Gaps = 11/149 (7%)
Query: 2 TEIQVVAFRLGDEEFCLEISKVREIKEMMP--ITRVPNAPDFVEGVINLRGQITTVINLK 59
+++QV F++G E + + I +REI ++ + +PN P+++ G+ NLRG I +INL
Sbjct: 12 SQLQVAGFKIGKESYGVSIEHIREIIKVPSEGVYAIPNVPEYIIGIYNLRGSIIPLINLN 71
Query: 60 KLLGY----YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVD 115
G +ED+ +I ++ +++G+ VD V VI+ + ++++PP TL + +D
Sbjct: 72 IKFGVPSISVTEEDMLLTGYLIVKIKNKLLGIFVDRVLKVISFDDSRVQEPPATLQT-LD 130
Query: 116 MKAIKGIAKINNGERL----LIMLDLDKL 140
K I G+ K++ + L L+++D+ K+
Sbjct: 131 RKYISGVVKLDEADNLESEYLVLIDIAKI 159
>sp|O83453|CHEW_TREPA CHEMOTAXIS PROTEIN CHEW >gi|7443002|pir||G71323 probable
purine-binding chemotaxis protein (cheW-2) - syphilis
spirochete >gi|3322724|gb|AAC65426.1| (AE001221)
purine-binding chemotaxis protein (cheW-2) [Treponema
pallidum]
Length = 170
Score = 80.0 bits (194), Expect = 1e-14
Identities = 45/144 (31%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
+ Q+V F+LG+E + ++I V+EI ++ + +P AP +VEG+ NLR +I +INL K
Sbjct: 20 QFQLVTFQLGEELYGIDIMGVKEIVKVQDVRPIPCAPAYVEGIFNLRSEIIPIINLHKRF 79
Query: 63 GYYD------DEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDM 116
+ DE L +I V +G+I+D ++ VI ++++ ++ PP+ + +
Sbjct: 80 HLREATLESGDEYLGG--FVILNVEDSKLGIIIDRIARVIAVSQEDVQSPPQVITG-IGA 136
Query: 117 KAIKGIAKINNGERLLIMLDLDKL 140
+ I G+ + G LI+LD+ KL
Sbjct: 137 EYIHGV--VRQGTSYLIVLDIHKL 158
>sp|P39802|CHEW_BACSU CHEMOTAXIS PROTEIN CHEW >gi|7442993|pir||C69599 chemotaxis protein
CheW - Bacillus subtilis >gi|2634016|emb|CAB13517.1|
(Z99112) cheW [Bacillus subtilis]
>gi|7240279|gb|AAB22364.2| (S38086) chemotaxis protein
[Bacillus subtilis]
Length = 156
Score = 79.6 bits (193), Expect = 1e-14
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+++ F + +E+ + +++V+ I++ TRVP ++ GVINLRG +T VI+L+K L
Sbjct: 10 KMIVFMVNGKEYAISVTQVKSIEKWQKPTRVPGVEPYICGVINLRGVVTPVIDLRKRLNL 69
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
+ E +III VG IVD +DVIT+ E +IE P+ + D+ +I+ I K
Sbjct: 70 PEYEITDETRIIIIAYRDIEVGWIVDEANDVITVHESEIESAPEGVQKDTDV-SIEQIVK 128
Query: 125 INNGERLLIMLDLDKLI 141
N RLL ++D + ++
Sbjct: 129 QEN--RLLNIIDANAVL 143
>pir||G64568 purine-binding chemotaxis protein - Helicobacter pylori (strain
26695) >gi|2313492|gb|AAD07456.1| (AE000555)
purine-binding chemotaxis protein (cheW) [Helicobacter
pylori 26695]
Length = 165
Score = 79.6 bits (193), Expect = 1e-14
Identities = 41/142 (28%), Positives = 82/142 (56%), Gaps = 4/142 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+Q + F +GDEE+ + I + EI + + TRVP P++V GV NLRG + +I+L+ G
Sbjct: 28 LQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFG 87
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
++ + + ++ N +I G +D +++ I + + I+ P+TL+ ++ GI
Sbjct: 88 LKAEKQNKDTRYLVVRHNDQIAGFFIDRLTEAIRIKQTDIDPVPETLSDNNNL--TYGIG 145
Query: 124 KINNGERLLIMLDLDKLIGESF 145
K N +RL+ +L +++++ + F
Sbjct: 146 KQN--DRLVTILRVEEILKKDF 165
>gb|AAG19396.1| (AE005033) chemotaxis protein; CheW1 [Halobacterium sp. NRC-1]
Length = 178
Score = 79.2 bits (192), Expect = 2e-14
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 14/151 (9%)
Query: 6 VVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYY 65
VV F+LGDE ++I+ V I E +TRVP APD VEGV++LRG+ T +++ ++ L +
Sbjct: 16 VVEFKLGDEVCAIDIAAVDSIVESKQVTRVPRAPDAVEGVMDLRGETTAIVDPREFLAIH 75
Query: 66 DDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQP---PKTLASKVDMKAIKGI 122
D D N ++ + + +G+ V V++V E QI++ + S ++ + ++G+
Sbjct: 76 GDHDSDNILVLDRADDKQKIGLRVAEVTEVSGYAEHQIDRGSRLDRIGTSAIESELVRGV 135
Query: 123 AK-----------INNGERLLIMLDLDKLIG 142
+ L++ LD+DKLIG
Sbjct: 136 IRKGATPPGEADAAEEDVALVLWLDIDKLIG 166
>gb|AAD01689.1| (AF021091) chemotaxis protein CheW [Helicobacter pylori]
Length = 172
Score = 78.8 bits (191), Expect = 3e-14
Identities = 41/140 (29%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+Q + F +GDEE+ + I + EI + + TRVP P++V GV NLRG + +I+L+ G
Sbjct: 28 LQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFG 87
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
++ + + ++ N +I G +D +++ I + + I+ P+TL+ ++ GI
Sbjct: 88 LKAEKQNKDTRYLVVRHNDQIAGFFIDRLTEAIRIKQTDIDPVPETLSDNNNL--TYGIG 145
Query: 124 KINNGERLLIMLDLDKLIGE 143
K N +RL+ +L +++++ E
Sbjct: 146 KQN--DRLVTILRVEEILKE 163
>dbj|BAA83929.1| (AB024556) CHEV [Bacillus halodurans]
Length = 136
Score = 78.8 bits (191), Expect = 3e-14
Identities = 41/125 (32%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
E++++ F +G E F + + KVREI + +P+T VPN+ VEG+I LR ++ ++++L K+L
Sbjct: 12 ELEIIIFTVGKETFAMNVMKVREIIQPIPVTSVPNSHPHVEGLIRLRDEVLSLVDLYKVL 71
Query: 63 GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
G E+ + K I+ E+N V V+ VS++ ++ IE+P T S+ + G+
Sbjct: 72 GELRAEEATEDKFIVGELNRMKVAFRVEKVSNIHRISWSDIEKP--TDLSQGLEGLVTGV 129
Query: 123 AKINN 127
K+++
Sbjct: 130 VKVDD 134
>pir||E70183 purine-binding chemotaxis protein (cheW-3) homolog - Lyme disease
spirochete >gi|2688606|gb|AAC67023.1| (AE001168)
purine-binding chemotaxis protein (cheW-3) [Borrelia
burgdorferi]
Length = 466
Score = 78.4 bits (190), Expect = 3e-14
Identities = 43/139 (30%), Positives = 85/139 (60%), Gaps = 5/139 (3%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
+ +VV+F LG + + ++I +V+EI++ T VPNA +V G+ NLRG+I +I+L+ +
Sbjct: 26 DFKVVSFELGSDHYLVDIMQVKEIRKSSNFTYVPNAKKYVAGLDNLRGEIIPIIDLRIMF 85
Query: 63 GY-YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
++ +D+ + I++ + ++GVIVD +++V ++ I+ P L+ + IKG
Sbjct: 86 NLEFNKKDIED--IMVLKNEDLLIGVIVDKINNVFSIDSSLIQDPHPVLSQDSLINYIKG 143
Query: 122 IAKINNGERLLIMLDLDKL 140
+ N E+L I+L++ K+
Sbjct: 144 VVDYN--EKLYILLNVFKI 160
>gb|AAC33469.1| (AF074950) CheW [Treponema denticola]
Length = 444
Score = 78.4 bits (190), Expect = 3e-14
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
+ + ++V F L +++ ++I +V+EI + T VPN FV GV NLRG I +I+L+
Sbjct: 27 VVDFKMVTFSLAGKDYAIDIMRVKEIAKAGNFTYVPNTSPFVLGVYNLRGDIIPIIDLRI 86
Query: 61 LLGYYDDEDLSN--KKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKA 118
N + ++I V + GV+VD + V+ ++ I QPP + +++K
Sbjct: 87 FFNIPVPARKKNQPESMVIINVQDQTFGVVVDFIDKVVGVSSSTI-QPPHPIFGDINIKY 145
Query: 119 IKGIAKINNGERLLIMLDLDKL 140
I G+ + NG L I+LD+DK+
Sbjct: 146 IHGV--VENGGHLYILLDVDKI 165
>gb|AAB81649.1| (U61498) CheW [Borrelia burgdorferi]
Length = 466
Score = 78.4 bits (190), Expect = 3e-14
Identities = 43/139 (30%), Positives = 85/139 (60%), Gaps = 5/139 (3%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
+ +VV+F LG + + ++I +V+EI++ T VPNA +V G+ NLRG+I +I+L+ +
Sbjct: 26 DFKVVSFELGSDHYLVDIMQVKEIRKSSNFTYVPNAKKYVAGLDNLRGEIIPIIDLRIMF 85
Query: 63 GY-YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
++ +D+ + I++ + ++GVIVD +++V ++ I+ P L+ + IKG
Sbjct: 86 NLEFNKKDIED--IMVLKNEDLLIGVIVDKINNVFSIDSSLIQDPHPVLSQDSLINYIKG 143
Query: 122 IAKINNGERLLIMLDLDKL 140
+ N E+L I+L++ K+
Sbjct: 144 VVDYN--EKLYILLNVFKI 160
>pir||A44130 chemotaxis protein CheW - Bacillus subtilis
Length = 156
Score = 78.0 bits (189), Expect = 4e-14
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
+++ F + +E+ + +++V+ I++ TRVP ++ GVINLRG +T VI+L+K L
Sbjct: 10 KMIVFMVNGKEYAISVTQVKSIEKWQKPTRVPGVEPYICGVINLRGVVTPVIDLRKRLNL 69
Query: 65 YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
+ E +III VG IVD +DVIT+ E +IE P+ + K + +I+ I K
Sbjct: 70 PEYEITDETRIIIIAYRDIEVGWIVDEANDVITVHESEIESAPEGV-QKDTVDSIEQIVK 128
Query: 125 INNGERLLIMLDLDKLI 141
N RLL ++D + ++
Sbjct: 129 QEN--RLLNIIDANAVL 143
>pir||B82206 probable purine-binding chemotaxis protein Chew VC1402 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655897|gb|AAF94559.1| (AE004218) purine-binding
chemotaxis protein Chew, putative [Vibrio cholerae]
Length = 520
Score = 78.0 bits (189), Expect = 4e-14
Identities = 45/144 (31%), Positives = 78/144 (53%), Gaps = 5/144 (3%)
Query: 2 TEIQVVAFRLGDEEFCLEISKVREIKEMMP-ITRVPNAPDFVEGVINLRGQITTVINLKK 60
T++Q+V F+L EEF + I V+EI + I+RVP DF+EGVINLRG + +++++K
Sbjct: 367 TDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRK 426
Query: 61 LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
+ ++I++ G IVD+VS+V+ + E Q+E P + +
Sbjct: 427 RFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAPVLSEEQAQLMR-- 484
Query: 121 GIAKINNGERLLIMLDLDKLIGES 144
+N R++ +L D+LI +
Sbjct: 485 --QMVNLSPRMIGVLSADQLISNT 506
>pir||A81447 chemotaxis protein Cj0283c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967759|emb|CAB72750.1|
(AL139074) chemotaxis protein [Campylobacter jejuni]
Length = 173
Score = 77.6 bits (188), Expect = 6e-14
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
IQ+V F +GDEE+ + I ++EI + + TRVP+ PD+V GV N+RG + +I+L +
Sbjct: 30 IQLVGFVVGDEEYAIPILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFH 89
Query: 64 YYDDEDLSNKKIII--AEVNGEIV----GVIVDAVSDVITLTEDQIEQPPKTLASKVDMK 117
+ + I+ E NG V G ++D +++ I + ++I+ PP+TL D
Sbjct: 90 LGSSKMTPQTRYIVLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVK--DKG 147
Query: 118 AIKGIAKINNGERLLIMLDLDKLIGESF 145
I GI K E +L +L ++ L+ F
Sbjct: 148 MIYGIGK--RDENILTILKVEALLKREF 173
>gb|AAD13199.1| (AF096317) putative chemotaxis protein CheW [Desulfovibrio gigas]
Length = 168
Score = 75.7 bits (183), Expect = 2e-13
Identities = 45/141 (31%), Positives = 81/141 (56%), Gaps = 7/141 (4%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
++++ L + F L+I VREI +M IT +P+ P+++ GV+N+RG V++L+ G
Sbjct: 10 MRLLTLTLDNVYFALDIHCVREILDMTDITSIPHTPEYMRGVVNVRGSAVPVVDLRLKFG 69
Query: 64 YYDDEDLSNKKIIIAEV-NGE---IVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAI 119
E N +I+I E+ GE +G I D+V +V+ + +I+ PP+ + + + I
Sbjct: 70 LPAAERTLNTRIVILEIPRGEGVAAIGAIADSVREVLEVETARIDPPPR-MGTGIRADFI 128
Query: 120 KGIAKINNGERLLIMLDLDKL 140
+GI + ER L++LD K+
Sbjct: 129 RGICR--QDERFLLILDAAKV 147
>gb|AAB96836.1| (U34384) CheW [Borrelia burgdorferi]
Length = 195
Score = 73.0 bits (176), Expect = 1e-12
Identities = 42/139 (30%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
+ +VV+F LG + + ++I +V+EI++ VPNA +V G+ NLRG+I I+L+ +
Sbjct: 26 DFKVVSFGLGSDHYLVDIMQVKEIRKSSNFAYVPNAKKYVAGLDNLRGEIFPNIDLRIMF 85
Query: 63 GY-YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
++ +D+ + I++ + ++GVIVD +++V ++ I+ P L+ + IKG
Sbjct: 86 NLEFNKKDIED--IMVLKNEDLLIGVIVDKINNVFSIDSSLIQDPHPVLSQDSLINYIKG 143
Query: 122 IAKINNGERLLIMLDLDKL 140
+ N E+L I+L++ K+
Sbjct: 144 VVDYN--EKLYILLNVFKI 160
>pir||B71335 probable purine-binding chemotaxis protein (cheW-1) - syphilis
spirochete >gi|1765974|gb|AAC45556.1| (U61851)
chemotaxis protien CheW [Treponema pallidum]
>gi|3322641|gb|AAC65349.1| (AE001215) purine-binding
chemotaxis protein (cheW-1) [Treponema pallidum]
Length = 455
Score = 72.6 bits (175), Expect = 2e-12
Identities = 41/140 (29%), Positives = 77/140 (54%), Gaps = 5/140 (3%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
+ ++V F L +++ ++I +V+EI + T VPN FV GV NLRG I +I+L++
Sbjct: 38 DFKMVTFSLAGKDYAVDIMQVKEIAKAGSFTYVPNTSPFVLGVYNLRGDIIPIIDLRRFF 97
Query: 63 GYYDDEDLSN--KKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
+ ++I V + GV+VD + VI +++ I QPP + +++K I+
Sbjct: 98 NIPAPRKSRQAIENMVIVTVEDQTFGVVVDGIDKVIGVSKTTI-QPPHPIFGDINIKYIR 156
Query: 121 GIAKINNGERLLIMLDLDKL 140
G+ + +L I+LD+ ++
Sbjct: 157 GV--VEEAGKLYILLDVHRI 174
>gb|AAD45221.1|AF105017_2 (AF105017) chemotaxis protein CheW [Treponema pallidum subsp.
pertenue]
Length = 444
Score = 72.6 bits (175), Expect = 2e-12
Identities = 41/140 (29%), Positives = 77/140 (54%), Gaps = 5/140 (3%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
+ ++V F L +++ ++I +V+EI + T VPN FV GV NLRG I +I+L++
Sbjct: 27 DFKMVTFSLAGKDYAVDIMQVKEIAKAGSFTYVPNTSPFVLGVYNLRGDIIPIIDLRRFF 86
Query: 63 GYYDDEDLSN--KKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
+ ++I V + GV+VD + VI +++ I QPP + +++K I+
Sbjct: 87 NIPAPRKSRQAIENMVIVTVEDQTFGVVVDGIDKVIGVSKTTI-QPPHPIFGDINIKYIR 145
Query: 121 GIAKINNGERLLIMLDLDKL 140
G+ + +L I+LD+ ++
Sbjct: 146 GV--VEEAGKLYILLDVHRI 163
>pir||A71865 histidine kinase (mcp coupling protein) - Helicobacter pylori
(strain J99) >gi|4155569|gb|AAD06563.1| (AE001527)
histidine kinase - MCP coupling protein [Helicobacter
pylori J99]
Length = 165
Score = 71.0 bits (171), Expect = 6e-12
Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 4 IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
+Q + F +GDEE+ + I + EI + + TRVP P++V GV NLRG + +I+L+ G
Sbjct: 28 LQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFG 87
Query: 64 YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
++ + + ++ N +I G + +D I + + I+ +T+ ++ GI
Sbjct: 88 LKAEKQNKDTRYLVVRHNDQIAGFFIAFWTDAIRIKQSTIDPVAETVRDNNNL--TYGIG 145
Query: 124 KINNGERLLIMLDLDKLIGESF 145
K N +RL+ +L +++++ + F
Sbjct: 146 KQN--DRLVTILRVEEILKKDF 165
>pir||C81447 chemotaxis protein (EC 2.7.3.-) Cj0285c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967761|emb|CAB72752.1|
(AL139074) chemotaxis protein [Campylobacter jejuni]
Length = 318
Score = 71.0 bits (171), Expect = 6e-12
Identities = 47/149 (31%), Positives = 82/149 (54%), Gaps = 11/149 (7%)
Query: 3 EIQVVAFRL---GDEE-----FCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITT 54
E+++V FR+ G ++ + + +SKVREI ++ +T +P PD++EG+ +LRG +
Sbjct: 13 EMELVDFRIFKQGHDKVYEGIYGVNVSKVREIIKIPSLTELPGVPDYIEGIFDLRGVVIP 72
Query: 55 VINLKKLLGYYDDEDLSNK-KIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPP-KTLAS 112
V+NL K + + E K ++II E + ++G IV + + IE T +
Sbjct: 73 VVNLAKWMQITEPESTMLKPRVIITEFSNILIGFIVHEAKRIRRINWKDIEPATFSTGSG 132
Query: 113 KVDMKAIKGIAKINNGERLLIMLDLDKLI 141
+D I G+ +I N E LLI LDL+ ++
Sbjct: 133 ALDKGKITGVTRIENDEVLLI-LDLESVV 160
>dbj|BAB05981.1| (AP001514) modulation of CheA activity in response to attractants
(chemotaxis protein) [Bacillus halodurans]
Length = 305
Score = 71.0 bits (171), Expect = 6e-12
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
E++++ F + F + + KVREI +P+T PN+ +EGVI LR ++ VINL ++L
Sbjct: 16 ELEIIMFSIAGGLFGINVLKVREIINPLPMTETPNSHPHIEGVIRLRQEVIPVINLAQVL 75
Query: 63 GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
+ K+IIAE+N V V VS + ++ +QIE+P + S GI
Sbjct: 76 NLPPSSNPQQDKLIIAELNRLKVAFHVHEVSRIHRISWEQIEKPSQLFHS--GHAHTIGI 133
Query: 123 AKINNGERLLIMLDLDK 139
K+ + ++ ++LD +K
Sbjct: 134 VKLES--QMALLLDFEK 148
>pir||T45019 chemotaxis protein, CheWIII [imported] - Rhodobacter sphaeroides
>gi|2293002|emb|CAA04431.1| (AJ000977) chemotaxis
protein, CheWIII [Rhodobacter sphaeroides]
Length = 178
Score = 70.2 bits (169), Expect = 1e-11
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 6 VVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYY 65
VV F G+ + L + +V+EI ++ P+ +PNAP + G+ ++RG V++L+ LLG
Sbjct: 24 VVTFMAGEALYALPVERVQEILDLQPVAPLPNAPAHLLGLCDVRGAGVPVVDLRSLLGLP 83
Query: 66 DDEDLSNKKIIIAEVNG----EIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
ED + +I++ V +VG+ + V +V L E +++Q A+ G
Sbjct: 84 PTEDTGHSRILVTWVASAGARHVVGLKTERVIEVTALDEGRMQQMSSADMLNWTDTAVMG 143
Query: 122 IAKINNGERLLIMLDLDKLIGES 144
I K N + +LD+D+L+ S
Sbjct: 144 IGKRNGA--FVTLLDIDRLMDPS 164
>pir||D70170 purine-binding chemotaxis protein (cheW-2) homolog - Lyme disease
spirochete >gi|2688491|gb|AAC66936.1| (AE001158)
purine-binding chemotaxis protein (cheW-2) [Borrelia
burgdorferi]
Length = 180
Score = 69.9 bits (168), Expect = 1e-11
Identities = 49/150 (32%), Positives = 84/150 (55%), Gaps = 18/150 (12%)
Query: 5 QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
Q + F L DE + +EI V E+ E I+++P P+++ G+IN RG+I +I+++K G
Sbjct: 13 QYLLFSL-DELYAIEIKYVVEVLEYTKISKIPRTPNYMAGIINNRGKIVPIIDIRKQFGM 71
Query: 65 YD---DED---------LSNKKIIIAEVNGE--IVGVIVDAVSDVITLTEDQIEQPPKTL 110
D DED +SN I+ G+ +G++VD V++V+ L I+ PK +
Sbjct: 72 SDRAVDEDDKKRNKGVNISNIIILNLVYEGDEFNLGILVDYVNEVLELDPFSIDDAPK-I 130
Query: 111 ASKVDMKAIKGIAKINNGERLLIMLDLDKL 140
S + K I GI K N ++ +I+L+++ L
Sbjct: 131 GSGFNSKFISGIGKSN--DKFIIILNVENL 158
>sp|P37599|CHEV_BACSU CHEMOTAXIS CHEV PROTEIN >gi|1075832|pir||A55592 cheA
activity-modulating chemotaxis protein cheV - Bacillus
subtilis >gi|453378|gb|AAA16526.1| (U05345) CheV
[Bacillus subtilis] >gi|580837|emb|CAA82701.1| (Z29584)
CheV [Bacillus subtilis] >gi|2632222|emb|CAA10864.1|
(AJ222587) CheV protein [Bacillus subtilis]
>gi|2633772|emb|CAB13274.1| (Z99111) cheV [Bacillus
subtilis]
Length = 303
Score = 69.5 bits (167), Expect = 2e-11
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Query: 3 EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
E+++V F +G+ F + + KVREI + + +T VP++ VEG+I LRG+I VI+L
Sbjct: 16 ELEIVKFGVGENAFGINVMKVREIIQPVEVTSVPHSHQHVEGMIKLRGEILPVISLFSFF 75
Query: 63 GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
G + E ++K I+ E N + V +VS + ++ + IE+P T ++ + + GI
Sbjct: 76 G-VEPEGSKDEKYIVTEFNKRKIVFHVGSVSQIHRVSWEAIEKP--TSLNQGMERHLTGI 132
Query: 123 AKINNGERLLIML-DLDKLI 141
K+ E L+I L D +K+I
Sbjct: 133 IKL---EDLMIFLPDYEKII 149
>pir||B82380 purine-binding chemotaxis protein CheW VCA1094 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658540|gb|AAF96986.1| (AE004434) purine-binding
chemotaxis protein CheW [Vibrio cholerae]
Length = 175
Score = 69.1 bits (166), Expect = 2e-11
Identities = 46/140 (32%), Positives = 77/140 (54%), Gaps = 11/140 (7%)
Query: 7 VAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYYD 66
++F LG E + + +S V EI+ T +P AP FV+GVINLRG I +I+L++ G
Sbjct: 31 LSFMLGTELYGVTLSHVEEIRVWEKPTPIPRAPHFVKGVINLRGMIVPIIDLRQRFGLTQ 90
Query: 67 DEDLSNKKIIIAEVNGE----IVGVIVDAVSDVITLTEDQIEQP-PKTLASKVDMKAIKG 121
E L ++I + ++G++VD+VSDVI Q + P + + + + G
Sbjct: 91 YEYLPTTVVLILSAREQEQKRLMGLVVDSVSDVI----GQGDMPLHPAIGESMVVPFLSG 146
Query: 122 IAKINNGERLLIMLDLDKLI 141
I +N G+ ++ +LD D L+
Sbjct: 147 I--LNVGDEVMSLLDSDALL 164
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.375
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49673469
Number of Sequences: 2977
Number of extensions: 1826381
Number of successful extensions: 5568
Number of sequences better than 1.0e-10: 46
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 5512
Number of HSP's gapped (non-prelim): 50
length of query: 145
length of database: 189,106,746
effective HSP length: 57
effective length of query: 88
effective length of database: 154,992,987
effective search space: 13639382856
effective search space used: 13639382856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)