BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1027 (cheW) DE:purine-binding chemotaxis protein (cheW)
         (145 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75003 purine-binding chemotaxis protein (chew) PAB1027 - P...   282  9e-76
pir||A71160 probable purine-binding chemotaxis protein (cheW) - ...   275  2e-73
gi|11498649 purine-binding chemotaxis protein (cheW) [Archaeoglo...   131  3e-30
sp|Q60251|CHEW_RHOSH CHEMOTAXIS PROTEIN CHEW >gi|7442994|pir||S7...   113  7e-25
pir||D72341 purine-binding chemotaxis protein - Thermotoga marit...   111  5e-24
sp|Q52881|CHEW_RHIME CHEMOTAXIS PROTEIN CHEW >gi|2120801|pir||S6...   103  8e-22
pir||S47260 cheW protein - Rhodobacter sphaeroides                    100  9e-21
gb|AAC08070.1| (AF031898) CheW [Pseudomonas putida]                    99  2e-20
gb|AAF32421.1| (AF069392) chemotaxis protein CheW [Vibrio paraha...    98  5e-20
gb|AAG34157.1|AF312878_2 (AF312878) chemotaxis protein CheW2 [Si...    98  5e-20
dbj|BAB06688.1| (AP001517) modulation of CheA activity in respon...    98  6e-20
sp|P07365|CHEW_ECOLI CHEMOTAXIS PROTEIN CHEW >gi|72605|pir||QREC...    97  8e-20
pir||E82122 purine-binding chemotaxis protein CheW VC2059 [impor...    96  2e-19
pir||T46620 chemotaxis protein cheW [imported] - Pseudomonas aer...    96  2e-19
sp|P06110|CHEW_SALTY CHEMOTAXIS PROTEIN CHEW >gi|79056|pir||A261...    95  3e-19
gb|AAB53941.1| (U92493) chemotaxis protein [Burkholderia pseudom...    93  1e-18
pir||B83624 probable purine-binding chemotaxis protein PA0177 [i...    93  1e-18
sp|O87715|CHEW_CAUCR CHEMOTAXIS PROTEIN CHEW >gi|3387364|emb|CAA...    92  3e-18
sp|Q56311|CHEW_THEMA CHEMOTAXIS PROTEIN CHEW >gi|7443004|pir||C7...    90  8e-18
sp|P21821|CHEW_ENTAE CHEMOTAXIS PROTEIN CHEW >gi|95554|pir||B323...    88  5e-17
pir||A82380 purine-binding chemotaxis protein CheW VCA1093 [impo...    88  5e-17
dbj|BAB05431.1| (AP001512) modulation of CheA activity in respon...    87  7e-17
pir||G70138 purine-binding chemotaxis protein (cheW-1) homolog -...    85  3e-16
sp|O83453|CHEW_TREPA CHEMOTAXIS PROTEIN CHEW >gi|7443002|pir||G7...    80  1e-14
sp|P39802|CHEW_BACSU CHEMOTAXIS PROTEIN CHEW >gi|7442993|pir||C6...    80  1e-14
pir||G64568 purine-binding chemotaxis protein - Helicobacter pyl...    80  1e-14
gb|AAG19396.1| (AE005033) chemotaxis protein; CheW1 [Halobacteri...    79  2e-14
gb|AAD01689.1| (AF021091) chemotaxis protein CheW [Helicobacter ...    79  3e-14
dbj|BAA83929.1| (AB024556) CHEV [Bacillus halodurans]                  79  3e-14
pir||E70183 purine-binding chemotaxis protein (cheW-3) homolog -...    78  3e-14
gb|AAC33469.1| (AF074950) CheW [Treponema denticola]                   78  3e-14
gb|AAB81649.1| (U61498) CheW [Borrelia burgdorferi]                    78  3e-14
pir||A44130 chemotaxis protein CheW - Bacillus subtilis                78  4e-14
pir||B82206 probable purine-binding chemotaxis protein Chew VC14...    78  4e-14
pir||A81447 chemotaxis protein Cj0283c [imported] - Campylobacte...    78  6e-14
gb|AAD13199.1| (AF096317) putative chemotaxis protein CheW [Desu...    76  2e-13
gb|AAB96836.1| (U34384) CheW [Borrelia burgdorferi]                    73  1e-12
pir||B71335 probable purine-binding chemotaxis protein (cheW-1) ...    73  2e-12
gb|AAD45221.1|AF105017_2 (AF105017) chemotaxis protein CheW [Tre...    73  2e-12
pir||A71865 histidine kinase (mcp coupling protein) - Helicobact...    71  6e-12
pir||C81447 chemotaxis protein (EC 2.7.3.-) Cj0285c [imported] -...    71  6e-12
dbj|BAB05981.1| (AP001514) modulation of CheA activity in respon...    71  6e-12
pir||T45019 chemotaxis protein, CheWIII [imported] - Rhodobacter...    70  1e-11
pir||D70170 purine-binding chemotaxis protein (cheW-2) homolog -...    70  1e-11
sp|P37599|CHEV_BACSU CHEMOTAXIS CHEV PROTEIN >gi|1075832|pir||A5...    69  2e-11
pir||B82380 purine-binding chemotaxis protein CheW VCA1094 [impo...    69  2e-11

>pir||A75003 purine-binding chemotaxis protein (chew) PAB1027 - Pyrococcus
           abyssi (strain Orsay) >gi|5458977|emb|CAB50463.1|
           (AJ248288) purine-binding chemotaxis protein (cheW)
           [Pyrococcus abyssi]
           Length = 145
           
 Score =  282 bits (715), Expect = 9e-76
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
           MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK
Sbjct: 1   MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60

Query: 61  LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
           LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK
Sbjct: 61  LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120

Query: 121 GIAKINNGERLLIMLDLDKLIGESF 145
           GIAKINNGERLLIMLDLDKLIGESF
Sbjct: 121 GIAKINNGERLLIMLDLDKLIGESF 145


>pir||A71160 probable purine-binding chemotaxis protein (cheW) - Pyrococcus
           horikoshii >gi|3256883|dbj|BAA29566.1| (AP000002) 145aa
           long hypothetical purine-binding chemotaxis protein
           (cheW) [Pyrococcus horikoshii]
           Length = 145
           
 Score =  275 bits (695), Expect = 2e-73
 Identities = 141/145 (97%), Positives = 143/145 (98%)

Query: 1   MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
           M EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK
Sbjct: 1   MGEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60

Query: 61  LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
           LLGYYDD DLSNKKIIIAEVNGEIVGVIVD+VSDVITLTEDQIEQPPKTLAS+VDMKAIK
Sbjct: 61  LLGYYDDGDLSNKKIIIAEVNGEIVGVIVDSVSDVITLTEDQIEQPPKTLASRVDMKAIK 120

Query: 121 GIAKINNGERLLIMLDLDKLIGESF 145
           GIAKINNGERLLIMLDLDKLIGESF
Sbjct: 121 GIAKINNGERLLIMLDLDKLIGESF 145


>gi|11498649 purine-binding chemotaxis protein (cheW) [Archaeoglobus fulgidus]
           >gi|7442997|pir||D69380 purine-binding chemotaxis
           protein (cheW) homolog - Archaeoglobus fulgidus
           >gi|2649556|gb|AAB90206.1| (AE001031) purine-binding
           chemotaxis protein (cheW) [Archaeoglobus fulgidus]
           Length = 160
           
 Score =  131 bits (327), Expect = 3e-30
 Identities = 66/140 (47%), Positives = 98/140 (69%), Gaps = 2/140 (1%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +QV+ F LGDE + ++IS+VREI     ITR+PNAPDFVEGVINLRGQITT+INL+K  G
Sbjct: 16  VQVIVFNLGDERYGVDISQVREIIRPTQITRIPNAPDFVEGVINLRGQITTIINLRKRFG 75

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
                  +N +II+ E +  ++G++VD V++V  L+   IE  P  + ++ + K +KG+ 
Sbjct: 76  MEPKPIDNNTRIIVVEFDNAVIGMMVDTVNEVKYLSTADIEALPNIITAREEAKFLKGVG 135

Query: 124 KINNGERLLIMLDLDKLIGE 143
           K+ +G  LLIM+DL+K++ E
Sbjct: 136 KLPDG--LLIMIDLNKVLSE 153


>sp|Q60251|CHEW_RHOSH CHEMOTAXIS PROTEIN CHEW >gi|7442994|pir||S70181 cheW protein -
           Rhodobacter sphaeroides >gi|7532760|emb|CAB87135.1|
           (X80205) chemotaxis scaffold protein [Rhodobacter
           sphaeroides]
           Length = 152
           
 Score =  113 bits (281), Expect = 7e-25
 Identities = 57/133 (42%), Positives = 90/133 (66%), Gaps = 3/133 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           +VVAFR+G +EFC++I  VREI+   P T +P+AP ++ GVINLRG +  +INL + LG 
Sbjct: 12  EVVAFRIGSQEFCIDIRAVREIRSWTPTTILPHAPSYIIGVINLRGSVVPIINLAERLGL 71

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
              E  +   III  V G++VG++VDAVSD++TL    ++  PK +AS+  +  ++G+  
Sbjct: 72  GSLEPEARHVIIITVVEGQVVGLLVDAVSDILTLPPSSVQPMPK-IASETTLSFVRGVIT 130

Query: 125 INNGERLLIMLDL 137
           ++  +R+L +LDL
Sbjct: 131 LD--QRMLRLLDL 141


>pir||D72341 purine-binding chemotaxis protein - Thermotoga maritima  (strain
           MSB8) >gi|4981243|gb|AAD35800.1|AE001743_2 (AE001743)
           purine-binding chemotaxis protein [Thermotoga maritima]
           Length = 152
           
 Score =  111 bits (274), Expect = 5e-24
 Identities = 58/139 (41%), Positives = 93/139 (66%), Gaps = 3/139 (2%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           E++VV F+LG++ F ++I KV  I E+  I  VP   +++EGV+NLRG+I  V+NL+K  
Sbjct: 4   ELKVVTFKLGNQVFGVDIMKVESIVEVEKIVPVPETAEYIEGVMNLRGKIIPVVNLRKKF 63

Query: 63  GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
              D ED    KII++ V   ++G +VD VS+V+TLTE  IEQPP+ LA K     I G+
Sbjct: 64  KMPDMEDKKRAKIIVSMVKNTLIGFLVDDVSEVLTLTESDIEQPPQNLAGK-GKNYILGL 122

Query: 123 AKINNGERLLIMLDLDKLI 141
           AK+   + ++I+L++++++
Sbjct: 123 AKVR--DDIVIILNIEEVL 139


>sp|Q52881|CHEW_RHIME CHEMOTAXIS PROTEIN CHEW >gi|2120801|pir||S61835 cheW protein -
           Rhizobium meliloti >gi|534838|gb|AAA86675.1| (U13166)
           CheW [Sinorhizobium meliloti]
           Length = 155
           
 Score =  103 bits (255), Expect = 8e-22
 Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           +++AFR+GD+EFC+ I  VREI+   P T +P+AP +V GVINLRG +  +++    LG 
Sbjct: 14  ELIAFRVGDQEFCVNIMSVREIRGWTPATPMPHAPAYVLGVINLRGAVLPIVDFSARLGM 73

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
              E      II+A+V   +VG++VDAVSD++T+++  I QP   +AS  +    +G+  
Sbjct: 74  KAAEPTVRHVIIVAQVKSRVVGLLVDAVSDILTVSDRDI-QPTPDIASDFERSFARGVLA 132

Query: 125 INNGERLLIMLDLDKL 140
           I    R++ +++LD +
Sbjct: 133 IEG--RMICLVELDSV 146


>pir||S47260 cheW protein - Rhodobacter sphaeroides
           Length = 131
           
 Score =  100 bits (246), Expect = 9e-21
 Identities = 51/123 (41%), Positives = 81/123 (65%), Gaps = 3/123 (2%)

Query: 15  EFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYYDDEDLSNKK 74
           EFC++I  VREI+   P T +P+AP ++ GVINLRG +  +INL + LG    E  +   
Sbjct: 1   EFCIDIRAVREIRSWTPTTILPHAPSYIIGVINLRGSVVPIINLAERLGLGSLEPEARHV 60

Query: 75  IIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAKINNGERLLIM 134
           III  V G++VG++VDAVSD++TL    ++  PK +AS+  +  ++G+  ++  +R+L +
Sbjct: 61  IIITVVEGQVVGLLVDAVSDILTLPPSSVQPMPK-IASETTLSFVRGVITLD--QRMLRL 117

Query: 135 LDL 137
           LDL
Sbjct: 118 LDL 120


>gb|AAC08070.1| (AF031898) CheW [Pseudomonas putida]
           Length = 159
           
 Score = 99.5 bits (244), Expect = 2e-20
 Identities = 52/140 (37%), Positives = 89/140 (63%), Gaps = 3/140 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +Q V FRL +E + + + +V+E+     I  VP AP +V G+INLRG + TVI+ ++  G
Sbjct: 14  LQWVTFRLDNESYGINVMQVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTRQRFG 73

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
               E   N +I+I E + ++VG++VD+V++V+ L + +IE  P  + ++   K I+G+ 
Sbjct: 74  LMPTEVTDNTRIVIIEADKQVVGILVDSVAEVVYLRQSEIETAP-NVGNEESAKFIQGVC 132

Query: 124 KINNGERLLIMLDLDKLIGE 143
              NGE LLI+++LDK++ E
Sbjct: 133 N-KNGE-LLILVELDKMMTE 150


>gb|AAF32421.1| (AF069392) chemotaxis protein CheW [Vibrio parahaemolyticus]
           Length = 164
           
 Score = 97.9 bits (240), Expect = 5e-20
 Identities = 49/138 (35%), Positives = 87/138 (62%), Gaps = 3/138 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +Q V F+L +E + + + +VRE+     I  VP APD+V G+INLRG + TVI+ +   G
Sbjct: 19  LQWVTFQLEEETYGINVMQVREVLRYTEIAPVPGAPDYVLGIINLRGNVVTVIDTRSRFG 78

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
             + E   N +II+ E   +++G++VD+V++V+ L   +I+  P ++ +    K I+G++
Sbjct: 79  LMEGEVTDNTRIIVIESERQVIGILVDSVAEVVYLRSSEIDTTP-SVGTDESAKFIQGVS 137

Query: 124 KINNGERLLIMLDLDKLI 141
             N   +LLI++DL+KL+
Sbjct: 138 --NRDGKLLILVDLNKLL 153


>gb|AAG34157.1|AF312878_2 (AF312878) chemotaxis protein CheW2 [Sinorhizobium meliloti]
           Length = 154
           
 Score = 97.9 bits (240), Expect = 5e-20
 Identities = 47/140 (33%), Positives = 87/140 (61%), Gaps = 3/140 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +++V+F LG++EFC++I  +REI+   P+T +P+ P +V G+INLRG +  VI++   LG
Sbjct: 12  LEIVSFHLGEQEFCIDIMAIREIRGWAPVTPMPHTPPYVLGLINLRGAVIPVIDMACRLG 71

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
               E      II+ ++NG++VG++V+ VSD++T+  + + QP   +  +      +GI 
Sbjct: 72  MKMTEPSERSAIIVTDINGKLVGLLVEQVSDMMTIRSEDL-QPAPEIIPEAQRAFCRGIV 130

Query: 124 KINNGERLLIMLDLDKLIGE 143
            +   + ++  L+LD +I E
Sbjct: 131 ALE--KSMVCFLNLDTVIAE 148


>dbj|BAB06688.1| (AP001517) modulation of CheA activity in response to attractants
           (chemotaxis protein) [Bacillus halodurans]
           Length = 155
           
 Score = 97.5 bits (239), Expect = 6e-20
 Identities = 47/139 (33%), Positives = 86/139 (61%), Gaps = 3/139 (2%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           +++++ F+LGDEE+ +E+  ++ I+ M P+TR+P  P +V GV+NLRG IT VINL+   
Sbjct: 11  DLKLIVFQLGDEEYAIEVDYIQSIERMQPVTRIPGTPSYVIGVMNLRGVITPVINLRARF 70

Query: 63  GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
           G        + +I++   +G  +G +VD  +DV+ +  ++IE  P+ +   V    ++G+
Sbjct: 71  GLPAKAHDDSTRILVIADDGVEIGFVVDGANDVVDVPAEKIEPTPEVVGG-VQEDYLRGV 129

Query: 123 AKINNGERLLIMLDLDKLI 141
            K    +RL  +L+L+K+I
Sbjct: 130 VK--EEDRLFTLLNLEKVI 146


>sp|P07365|CHEW_ECOLI CHEMOTAXIS PROTEIN CHEW >gi|72605|pir||QRECCW purine binding
           chemotaxis protein cheW - Escherichia coli
           >gi|145520|gb|AAA23565.1| (M13463) cheW peptide
           [Escherichia coli] >gi|1736540|dbj|BAA15703.1| (D90830)
           Chemotaxis protein CheW [Escherichia coli]
           >gi|1736546|dbj|BAA15708.1| (D90831) Chemotaxis protein
           CheW [Escherichia coli] >gi|1788196|gb|AAC74957.1|
           (AE000282) positive regulator of CheA protein activity
           [Escherichia coli K12]
           Length = 167
           
 Score = 97.1 bits (238), Expect = 8e-20
 Identities = 48/137 (35%), Positives = 87/137 (63%), Gaps = 3/137 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           + + F LGDEE+ ++I KV+EI+    +TR+ N P F++GV NLRG I  +++L+     
Sbjct: 18  EFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKFSQ 77

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
            D +   N  +I+  +   +VG++VD VSDV++LT +QI   P+  A  +  + + G+  
Sbjct: 78  VDVDYNDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAPE-FAVTLSTEYLTGLGA 136

Query: 125 INNGERLLIMLDLDKLI 141
           +  G+R+LI+++++KL+
Sbjct: 137 L--GDRMLILVNIEKLL 151


>pir||E82122 purine-binding chemotaxis protein CheW VC2059 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9656605|gb|AAF95205.1| (AE004280) purine-binding
           chemotaxis protein CheW [Vibrio cholerae]
           Length = 174
           
 Score = 96.0 bits (235), Expect = 2e-19
 Identities = 48/138 (34%), Positives = 85/138 (60%), Gaps = 3/138 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +Q V F+L +E + + + +VRE+     I  VP APD+V G+INLRG + TVI+ +   G
Sbjct: 29  LQWVTFQLEEETYGINVMQVREVLRYTEIAPVPGAPDYVLGIINLRGNVVTVIDTRSRFG 88

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
               E   N +II+ E   +++G++VD+V++V+ L   +I+  P ++ +    K I+G++
Sbjct: 89  LMQGEITDNTRIIVIESERQVIGILVDSVAEVVYLRSSEIDSTP-SVGTDESSKFIQGVS 147

Query: 124 KINNGERLLIMLDLDKLI 141
             N   +LLI++DL+K +
Sbjct: 148 --NRDGKLLILVDLNKFL 163


>pir||T46620 chemotaxis protein cheW [imported] - Pseudomonas aeruginosa
           >gi|11351767|pir||D83461 probable purine-binding
           chemotaxis protein PA1464 [imported] - Pseudomonas
           aeruginosa (strain PAO1) >gi|3721576|dbj|BAA33555.1|
           (AB012767) CheW [Pseudomonas aeruginosa]
           >gi|9947417|gb|AAG04853.1|AE004576_2 (AE004576) probable
           purine-binding chemotaxis protein [Pseudomonas
           aeruginosa]
           Length = 159
           
 Score = 95.6 bits (234), Expect = 2e-19
 Identities = 51/140 (36%), Positives = 88/140 (62%), Gaps = 3/140 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +Q V FRL +E + + + +V+E+     I  VP AP +V G+INLRG + TVI+ ++  G
Sbjct: 14  LQWVTFRLDNESYGINVMQVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTRQRFG 73

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
                   N +I+I E + ++VG++VD+V++V+ L + +IE  P  + ++   K I+G+ 
Sbjct: 74  LDPAPVSDNTRIVIIEADKQVVGILVDSVAEVVYLKQSEIETAP-NVGNEESAKFIQGVC 132

Query: 124 KINNGERLLIMLDLDKLIGE 143
              NGE LLI+++LDK++ E
Sbjct: 133 N-KNGE-LLILVELDKMMTE 150


>sp|P06110|CHEW_SALTY CHEMOTAXIS PROTEIN CHEW >gi|79056|pir||A26143 chemotaxis protein
           cheW - Salmonella typhimurium >gi|153906|gb|AAA27036.1|
           (J02656) CheW protein [Salmonella typhimurium]
           Length = 167
           
 Score = 95.2 bits (233), Expect = 3e-19
 Identities = 49/137 (35%), Positives = 87/137 (62%), Gaps = 3/137 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           + + F LG+EE+ ++I KV+EI+    +TR+ N P F++GV NLRG I  +++L+     
Sbjct: 18  EFLVFTLGNEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRVKFCE 77

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
            D E   N  +I+  +   +VG++VD VSDV++LT +QI   P+  A  +  + + G+  
Sbjct: 78  GDVEYDDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAPE-FAVTLSTEYLTGLGA 136

Query: 125 INNGERLLIMLDLDKLI 141
           +  GER+LI+++++KL+
Sbjct: 137 L--GERMLILVNIEKLL 151


>gb|AAB53941.1| (U92493) chemotaxis protein [Burkholderia pseudomallei]
           Length = 175
           
 Score = 93.2 bits (228), Expect = 1e-18
 Identities = 50/137 (36%), Positives = 85/137 (61%), Gaps = 3/137 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           + + F LGDEE+ ++I KV+EI+    +TR+ NAPDF++GVINLRG I  +++++     
Sbjct: 29  EFLVFTLGDEEYGIDILKVQEIRGYDSVTRIANAPDFIKGVINLRGIIVPIVDMRIKFHL 88

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
              E      +II  V   +VG++VD VSDV+TL+ +QI  P       +  + + G+  
Sbjct: 89  GRVEYDHQTVVIILNVAHRVVGMVVDGVSDVLTLSTEQI-MPAPEFGGVLTTEYLTGLGT 147

Query: 125 INNGERLLIMLDLDKLI 141
           ++   R+LI++D++KL+
Sbjct: 148 VDG--RMLILMDIEKLM 162


>pir||B83624 probable purine-binding chemotaxis protein PA0177 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9946010|gb|AAG03567.1|AE004455_8 (AE004455) probable
           purine-binding chemotaxis protein [Pseudomonas
           aeruginosa]
           Length = 161
           
 Score = 93.2 bits (228), Expect = 1e-18
 Identities = 53/137 (38%), Positives = 85/137 (61%), Gaps = 3/137 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           + + F LG EE+ ++I +V+EI+    +T + NAP F++GVINLRG I  +++L+     
Sbjct: 15  EYLTFTLGREEYAIDILRVQEIRGYDQVTAIANAPPFIKGVINLRGAIVPIVDLRIKFHL 74

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
            +        +II  +   IVGV+VD+VSDVI L  D I  PP+  AS  D + + G+A 
Sbjct: 75  AEVTYDPFTVVIILNIGRRIVGVVVDSVSDVIALGGDAIRPPPEFGAS-FDTEYLLGLA- 132

Query: 125 INNGERLLIMLDLDKLI 141
              GER+LI++D+++L+
Sbjct: 133 -TAGERMLILVDIERLM 148


>sp|O87715|CHEW_CAUCR CHEMOTAXIS PROTEIN CHEW >gi|3387364|emb|CAA07178.1| (AJ006687) CheW
           [Caulobacter crescentus]
           Length = 155
           
 Score = 92.1 bits (225), Expect = 3e-18
 Identities = 46/139 (33%), Positives = 83/139 (59%), Gaps = 3/139 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           ++++FR+G++E+C++I  VREI+   P T +P +P ++ GVINLRG +  +++L   LG 
Sbjct: 14  ELISFRVGEQEYCVDIMAVREIRGWSPATTLPQSPGYMRGVINLRGAVLPIMDLACRLGM 73

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
              E       I+ +     VG++VDAVSD++++ +D I QP   +A       ++GI  
Sbjct: 74  PVIEPTVRSVFIVVKAGDRTVGLLVDAVSDILSINDDMI-QPTPDVACDAVRSFVRGIIS 132

Query: 125 INNGERLLIMLDLDKLIGE 143
           I    R++  + LD+++ E
Sbjct: 133 IEG--RMISEISLDRILPE 149


>sp|Q56311|CHEW_THEMA CHEMOTAXIS PROTEIN CHEW >gi|7443004|pir||C72346 purine-binding
           chemotaxis protein - Thermotoga maritima  (strain MSB8)
           >gi|940148|gb|AAA96388.1| (U30501) CheW [Thermotoga
           maritima] >gi|4981224|gb|AAD35783.1|AE001741_16
           (AE001741) purine-binding chemotaxis protein [Thermotoga
           maritima]
           Length = 151
           
 Score = 90.5 bits (221), Expect = 8e-18
 Identities = 55/143 (38%), Positives = 82/143 (56%), Gaps = 6/143 (4%)

Query: 1   MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
           + E +V++F + ++    ++  +  + E   IT VP +  FVEGVINLRG+I  V+NL K
Sbjct: 8   LKEFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAK 67

Query: 61  LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
           +LG   DE    K II+A      VG +VD V  V+ +TE+Q++    T  S    K  K
Sbjct: 68  ILGISFDEQ-KMKSIIVARTKDVEVGFLVDRVLGVLRITENQLD---LTNVSDKFGKKSK 123

Query: 121 GIAKINNGERLLIMLDLDKLIGE 143
           G+ K +   RL+I LD+DK+I E
Sbjct: 124 GLVKTDG--RLIIYLDIDKIIEE 144


>sp|P21821|CHEW_ENTAE CHEMOTAXIS PROTEIN CHEW >gi|95554|pir||B32302 chemotaxis protein
           cheW - Enterobacter aerogenes >gi|148348|gb|AAA24796.1|
           (M26411) cheW [Enterobacter aerogenes]
           Length = 165
           
 Score = 87.8 bits (214), Expect = 5e-17
 Identities = 47/133 (35%), Positives = 80/133 (59%), Gaps = 4/133 (3%)

Query: 9   FRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYYDDE 68
           F LG+EE+ ++I KV++I+    +TR+ N PDF++GV NLRG I  +I+L+         
Sbjct: 22  FTLGNEEYGIDILKVQKIRGYDQVTRIANTPDFIKGVTNLRGVIVPIIDLRVKYAQQGVS 81

Query: 69  DLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAKINNG 128
              N  +I+      +VG++VD VSDV++LT +QI   P+  A  +  + + G+  +   
Sbjct: 82  YDENTVVIVLNFGQRVVGIVVDGVSDVLSLTAEQIRPAPE-FAVTMATEYLTGLGALG-- 138

Query: 129 ERLLIMLDLDKLI 141
             LLI++D++KL+
Sbjct: 139 -ALLILVDIEKLL 150


>pir||A82380 purine-binding chemotaxis protein CheW VCA1093 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9658539|gb|AAF96985.1| (AE004434) purine-binding
           chemotaxis protein CheW [Vibrio cholerae]
           Length = 153
           
 Score = 87.8 bits (214), Expect = 5e-17
 Identities = 46/141 (32%), Positives = 92/141 (64%), Gaps = 4/141 (2%)

Query: 1   MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
           M + + ++F L DEE+ + I +VRE++   P+  +PNAP FV G++++RG+   +++LK+
Sbjct: 1   MMQREFLSFVLDDEEYGIPILEVREVRGWSPVRILPNAPPFVIGLLDIRGEYIPIVDLKR 60

Query: 61  LLGYYDDE-DLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAI 119
            LG    E + +   ++I   N + +G+IVDAV++V  L+E +I+  P ++++ +  + +
Sbjct: 61  RLGLVPVEINATTVVVVINAANQQPLGLIVDAVAEVYALSEQEIKHAP-SISTVIGNQYV 119

Query: 120 KGIAKINNGERLLIMLDLDKL 140
           KGIA + +  + L+++D+D L
Sbjct: 120 KGIAAVKS--KHLVLIDIDAL 138


>dbj|BAB05431.1| (AP001512) modulation of CheA activity in response to attractants
           (chemotaxis protein) [Bacillus halodurans]
           Length = 298
           
 Score = 87.4 bits (213), Expect = 7e-17
 Identities = 45/139 (32%), Positives = 87/139 (62%), Gaps = 4/139 (2%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           E++++ F +G E F + + KVREI + +P+T VPN+   VEG+I LR ++ ++++L K+L
Sbjct: 12  ELEIIIFTVGKETFAMNVMKVREIIQPIPVTSVPNSHPHVEGLIRLRDEVLSLVDLYKVL 71

Query: 63  GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
           G    E+ +  K I+ E+N   V   V+ VS++  ++   IE+P  T  S+     + G+
Sbjct: 72  GELRAEEATEDKFIVGELNRMKVAFRVEKVSNIHRISWSDIEKP--TDLSQGLEGLVTGV 129

Query: 123 AKINNGERLLIMLDLDKLI 141
            K++  ++L+++LD +K++
Sbjct: 130 VKVD--DKLILLLDFEKIV 146


>pir||G70138 purine-binding chemotaxis protein (cheW-1) homolog - Lyme disease
           spirochete >gi|2688217|gb|AAC66698.1| (AE001138)
           purine-binding chemotaxis protein (cheW-1) [Borrelia
           burgdorferi]
           Length = 176
           
 Score = 85.0 bits (207), Expect = 3e-16
 Identities = 44/149 (29%), Positives = 87/149 (57%), Gaps = 11/149 (7%)

Query: 2   TEIQVVAFRLGDEEFCLEISKVREIKEMMP--ITRVPNAPDFVEGVINLRGQITTVINLK 59
           +++QV  F++G E + + I  +REI ++    +  +PN P+++ G+ NLRG I  +INL 
Sbjct: 12  SQLQVAGFKIGKESYGVSIEHIREIIKVPSEGVYAIPNVPEYIIGIYNLRGSIIPLINLN 71

Query: 60  KLLGY----YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVD 115
              G       +ED+     +I ++  +++G+ VD V  VI+  + ++++PP TL + +D
Sbjct: 72  IKFGVPSISVTEEDMLLTGYLIVKIKNKLLGIFVDRVLKVISFDDSRVQEPPATLQT-LD 130

Query: 116 MKAIKGIAKINNGERL----LIMLDLDKL 140
            K I G+ K++  + L    L+++D+ K+
Sbjct: 131 RKYISGVVKLDEADNLESEYLVLIDIAKI 159


>sp|O83453|CHEW_TREPA CHEMOTAXIS PROTEIN CHEW >gi|7443002|pir||G71323 probable
           purine-binding chemotaxis protein (cheW-2) - syphilis
           spirochete >gi|3322724|gb|AAC65426.1| (AE001221)
           purine-binding chemotaxis protein (cheW-2) [Treponema
           pallidum]
           Length = 170
           
 Score = 80.0 bits (194), Expect = 1e-14
 Identities = 45/144 (31%), Positives = 82/144 (56%), Gaps = 11/144 (7%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           + Q+V F+LG+E + ++I  V+EI ++  +  +P AP +VEG+ NLR +I  +INL K  
Sbjct: 20  QFQLVTFQLGEELYGIDIMGVKEIVKVQDVRPIPCAPAYVEGIFNLRSEIIPIINLHKRF 79

Query: 63  GYYD------DEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDM 116
              +      DE L     +I  V    +G+I+D ++ VI ++++ ++ PP+ +   +  
Sbjct: 80  HLREATLESGDEYLGG--FVILNVEDSKLGIIIDRIARVIAVSQEDVQSPPQVITG-IGA 136

Query: 117 KAIKGIAKINNGERLLIMLDLDKL 140
           + I G+  +  G   LI+LD+ KL
Sbjct: 137 EYIHGV--VRQGTSYLIVLDIHKL 158


>sp|P39802|CHEW_BACSU CHEMOTAXIS PROTEIN CHEW >gi|7442993|pir||C69599 chemotaxis protein
           CheW - Bacillus subtilis >gi|2634016|emb|CAB13517.1|
           (Z99112) cheW [Bacillus subtilis]
           >gi|7240279|gb|AAB22364.2| (S38086) chemotaxis protein
           [Bacillus subtilis]
           Length = 156
           
 Score = 79.6 bits (193), Expect = 1e-14
 Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 3/137 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           +++ F +  +E+ + +++V+ I++    TRVP    ++ GVINLRG +T VI+L+K L  
Sbjct: 10  KMIVFMVNGKEYAISVTQVKSIEKWQKPTRVPGVEPYICGVINLRGVVTPVIDLRKRLNL 69

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
            + E     +III       VG IVD  +DVIT+ E +IE  P+ +    D+ +I+ I K
Sbjct: 70  PEYEITDETRIIIIAYRDIEVGWIVDEANDVITVHESEIESAPEGVQKDTDV-SIEQIVK 128

Query: 125 INNGERLLIMLDLDKLI 141
             N  RLL ++D + ++
Sbjct: 129 QEN--RLLNIIDANAVL 143


>pir||G64568 purine-binding chemotaxis protein - Helicobacter pylori  (strain
           26695) >gi|2313492|gb|AAD07456.1| (AE000555)
           purine-binding chemotaxis protein (cheW) [Helicobacter
           pylori 26695]
           Length = 165
           
 Score = 79.6 bits (193), Expect = 1e-14
 Identities = 41/142 (28%), Positives = 82/142 (56%), Gaps = 4/142 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +Q + F +GDEE+ + I  + EI + +  TRVP  P++V GV NLRG +  +I+L+   G
Sbjct: 28  LQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFG 87

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
              ++   + + ++   N +I G  +D +++ I + +  I+  P+TL+   ++    GI 
Sbjct: 88  LKAEKQNKDTRYLVVRHNDQIAGFFIDRLTEAIRIKQTDIDPVPETLSDNNNL--TYGIG 145

Query: 124 KINNGERLLIMLDLDKLIGESF 145
           K N  +RL+ +L +++++ + F
Sbjct: 146 KQN--DRLVTILRVEEILKKDF 165


>gb|AAG19396.1| (AE005033) chemotaxis protein; CheW1 [Halobacterium sp. NRC-1]
           Length = 178
           
 Score = 79.2 bits (192), Expect = 2e-14
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 14/151 (9%)

Query: 6   VVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYY 65
           VV F+LGDE   ++I+ V  I E   +TRVP APD VEGV++LRG+ T +++ ++ L  +
Sbjct: 16  VVEFKLGDEVCAIDIAAVDSIVESKQVTRVPRAPDAVEGVMDLRGETTAIVDPREFLAIH 75

Query: 66  DDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQP---PKTLASKVDMKAIKGI 122
            D D  N  ++    + + +G+ V  V++V    E QI++     +   S ++ + ++G+
Sbjct: 76  GDHDSDNILVLDRADDKQKIGLRVAEVTEVSGYAEHQIDRGSRLDRIGTSAIESELVRGV 135

Query: 123 AK-----------INNGERLLIMLDLDKLIG 142
            +                 L++ LD+DKLIG
Sbjct: 136 IRKGATPPGEADAAEEDVALVLWLDIDKLIG 166


>gb|AAD01689.1| (AF021091) chemotaxis protein CheW [Helicobacter pylori]
           Length = 172
           
 Score = 78.8 bits (191), Expect = 3e-14
 Identities = 41/140 (29%), Positives = 81/140 (57%), Gaps = 4/140 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +Q + F +GDEE+ + I  + EI + +  TRVP  P++V GV NLRG +  +I+L+   G
Sbjct: 28  LQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFG 87

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
              ++   + + ++   N +I G  +D +++ I + +  I+  P+TL+   ++    GI 
Sbjct: 88  LKAEKQNKDTRYLVVRHNDQIAGFFIDRLTEAIRIKQTDIDPVPETLSDNNNL--TYGIG 145

Query: 124 KINNGERLLIMLDLDKLIGE 143
           K N  +RL+ +L +++++ E
Sbjct: 146 KQN--DRLVTILRVEEILKE 163


>dbj|BAA83929.1| (AB024556) CHEV [Bacillus halodurans]
           Length = 136
           
 Score = 78.8 bits (191), Expect = 3e-14
 Identities = 41/125 (32%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           E++++ F +G E F + + KVREI + +P+T VPN+   VEG+I LR ++ ++++L K+L
Sbjct: 12  ELEIIIFTVGKETFAMNVMKVREIIQPIPVTSVPNSHPHVEGLIRLRDEVLSLVDLYKVL 71

Query: 63  GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
           G    E+ +  K I+ E+N   V   V+ VS++  ++   IE+P  T  S+     + G+
Sbjct: 72  GELRAEEATEDKFIVGELNRMKVAFRVEKVSNIHRISWSDIEKP--TDLSQGLEGLVTGV 129

Query: 123 AKINN 127
            K+++
Sbjct: 130 VKVDD 134


>pir||E70183 purine-binding chemotaxis protein (cheW-3) homolog - Lyme disease
           spirochete >gi|2688606|gb|AAC67023.1| (AE001168)
           purine-binding chemotaxis protein (cheW-3) [Borrelia
           burgdorferi]
           Length = 466
           
 Score = 78.4 bits (190), Expect = 3e-14
 Identities = 43/139 (30%), Positives = 85/139 (60%), Gaps = 5/139 (3%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           + +VV+F LG + + ++I +V+EI++    T VPNA  +V G+ NLRG+I  +I+L+ + 
Sbjct: 26  DFKVVSFELGSDHYLVDIMQVKEIRKSSNFTYVPNAKKYVAGLDNLRGEIIPIIDLRIMF 85

Query: 63  GY-YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
              ++ +D+ +  I++ +    ++GVIVD +++V ++    I+ P   L+    +  IKG
Sbjct: 86  NLEFNKKDIED--IMVLKNEDLLIGVIVDKINNVFSIDSSLIQDPHPVLSQDSLINYIKG 143

Query: 122 IAKINNGERLLIMLDLDKL 140
           +   N  E+L I+L++ K+
Sbjct: 144 VVDYN--EKLYILLNVFKI 160


>gb|AAC33469.1| (AF074950) CheW [Treponema denticola]
           Length = 444
           
 Score = 78.4 bits (190), Expect = 3e-14
 Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MTEIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKK 60
           + + ++V F L  +++ ++I +V+EI +    T VPN   FV GV NLRG I  +I+L+ 
Sbjct: 27  VVDFKMVTFSLAGKDYAIDIMRVKEIAKAGNFTYVPNTSPFVLGVYNLRGDIIPIIDLRI 86

Query: 61  LLGYYDDEDLSN--KKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKA 118
                      N  + ++I  V  +  GV+VD +  V+ ++   I QPP  +   +++K 
Sbjct: 87  FFNIPVPARKKNQPESMVIINVQDQTFGVVVDFIDKVVGVSSSTI-QPPHPIFGDINIKY 145

Query: 119 IKGIAKINNGERLLIMLDLDKL 140
           I G+  + NG  L I+LD+DK+
Sbjct: 146 IHGV--VENGGHLYILLDVDKI 165


>gb|AAB81649.1| (U61498) CheW [Borrelia burgdorferi]
           Length = 466
           
 Score = 78.4 bits (190), Expect = 3e-14
 Identities = 43/139 (30%), Positives = 85/139 (60%), Gaps = 5/139 (3%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           + +VV+F LG + + ++I +V+EI++    T VPNA  +V G+ NLRG+I  +I+L+ + 
Sbjct: 26  DFKVVSFELGSDHYLVDIMQVKEIRKSSNFTYVPNAKKYVAGLDNLRGEIIPIIDLRIMF 85

Query: 63  GY-YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
              ++ +D+ +  I++ +    ++GVIVD +++V ++    I+ P   L+    +  IKG
Sbjct: 86  NLEFNKKDIED--IMVLKNEDLLIGVIVDKINNVFSIDSSLIQDPHPVLSQDSLINYIKG 143

Query: 122 IAKINNGERLLIMLDLDKL 140
           +   N  E+L I+L++ K+
Sbjct: 144 VVDYN--EKLYILLNVFKI 160


>pir||A44130 chemotaxis protein CheW - Bacillus subtilis
           Length = 156
           
 Score = 78.0 bits (189), Expect = 4e-14
 Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 3/137 (2%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           +++ F +  +E+ + +++V+ I++    TRVP    ++ GVINLRG +T VI+L+K L  
Sbjct: 10  KMIVFMVNGKEYAISVTQVKSIEKWQKPTRVPGVEPYICGVINLRGVVTPVIDLRKRLNL 69

Query: 65  YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIAK 124
            + E     +III       VG IVD  +DVIT+ E +IE  P+ +  K  + +I+ I K
Sbjct: 70  PEYEITDETRIIIIAYRDIEVGWIVDEANDVITVHESEIESAPEGV-QKDTVDSIEQIVK 128

Query: 125 INNGERLLIMLDLDKLI 141
             N  RLL ++D + ++
Sbjct: 129 QEN--RLLNIIDANAVL 143


>pir||B82206 probable purine-binding chemotaxis protein Chew VC1402 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9655897|gb|AAF94559.1| (AE004218) purine-binding
           chemotaxis protein Chew, putative [Vibrio cholerae]
           Length = 520
           
 Score = 78.0 bits (189), Expect = 4e-14
 Identities = 45/144 (31%), Positives = 78/144 (53%), Gaps = 5/144 (3%)

Query: 2   TEIQVVAFRLGDEEFCLEISKVREIKEMMP-ITRVPNAPDFVEGVINLRGQITTVINLKK 60
           T++Q+V F+L  EEF + I  V+EI  +   I+RVP   DF+EGVINLRG +  +++++K
Sbjct: 367 TDMQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRK 426

Query: 61  LLGYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
                +      ++I++        G IVD+VS+V+ + E Q+E  P     +  +    
Sbjct: 427 RFHLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAPVLSEEQAQLMR-- 484

Query: 121 GIAKINNGERLLIMLDLDKLIGES 144
               +N   R++ +L  D+LI  +
Sbjct: 485 --QMVNLSPRMIGVLSADQLISNT 506


>pir||A81447 chemotaxis protein Cj0283c [imported] - Campylobacter jejuni
           (strain NCTC 11168) >gi|6967759|emb|CAB72750.1|
           (AL139074) chemotaxis protein [Campylobacter jejuni]
           Length = 173
           
 Score = 77.6 bits (188), Expect = 6e-14
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 10/148 (6%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           IQ+V F +GDEE+ + I  ++EI + +  TRVP+ PD+V GV N+RG +  +I+L +   
Sbjct: 30  IQLVGFVVGDEEYAIPILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFH 89

Query: 64  YYDDEDLSNKKIII--AEVNGEIV----GVIVDAVSDVITLTEDQIEQPPKTLASKVDMK 117
               +     + I+   E NG  V    G ++D +++ I +  ++I+ PP+TL    D  
Sbjct: 90  LGSSKMTPQTRYIVLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVK--DKG 147

Query: 118 AIKGIAKINNGERLLIMLDLDKLIGESF 145
            I GI K    E +L +L ++ L+   F
Sbjct: 148 MIYGIGK--RDENILTILKVEALLKREF 173


>gb|AAD13199.1| (AF096317) putative chemotaxis protein CheW [Desulfovibrio gigas]
           Length = 168
           
 Score = 75.7 bits (183), Expect = 2e-13
 Identities = 45/141 (31%), Positives = 81/141 (56%), Gaps = 7/141 (4%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           ++++   L +  F L+I  VREI +M  IT +P+ P+++ GV+N+RG    V++L+   G
Sbjct: 10  MRLLTLTLDNVYFALDIHCVREILDMTDITSIPHTPEYMRGVVNVRGSAVPVVDLRLKFG 69

Query: 64  YYDDEDLSNKKIIIAEV-NGE---IVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAI 119
               E   N +I+I E+  GE    +G I D+V +V+ +   +I+ PP+ + + +    I
Sbjct: 70  LPAAERTLNTRIVILEIPRGEGVAAIGAIADSVREVLEVETARIDPPPR-MGTGIRADFI 128

Query: 120 KGIAKINNGERLLIMLDLDKL 140
           +GI +    ER L++LD  K+
Sbjct: 129 RGICR--QDERFLLILDAAKV 147


>gb|AAB96836.1| (U34384) CheW [Borrelia burgdorferi]
           Length = 195
           
 Score = 73.0 bits (176), Expect = 1e-12
 Identities = 42/139 (30%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           + +VV+F LG + + ++I +V+EI++      VPNA  +V G+ NLRG+I   I+L+ + 
Sbjct: 26  DFKVVSFGLGSDHYLVDIMQVKEIRKSSNFAYVPNAKKYVAGLDNLRGEIFPNIDLRIMF 85

Query: 63  GY-YDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
              ++ +D+ +  I++ +    ++GVIVD +++V ++    I+ P   L+    +  IKG
Sbjct: 86  NLEFNKKDIED--IMVLKNEDLLIGVIVDKINNVFSIDSSLIQDPHPVLSQDSLINYIKG 143

Query: 122 IAKINNGERLLIMLDLDKL 140
           +   N  E+L I+L++ K+
Sbjct: 144 VVDYN--EKLYILLNVFKI 160


>pir||B71335 probable purine-binding chemotaxis protein (cheW-1) - syphilis
           spirochete >gi|1765974|gb|AAC45556.1| (U61851)
           chemotaxis protien CheW [Treponema pallidum]
           >gi|3322641|gb|AAC65349.1| (AE001215) purine-binding
           chemotaxis protein (cheW-1) [Treponema pallidum]
           Length = 455
           
 Score = 72.6 bits (175), Expect = 2e-12
 Identities = 41/140 (29%), Positives = 77/140 (54%), Gaps = 5/140 (3%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           + ++V F L  +++ ++I +V+EI +    T VPN   FV GV NLRG I  +I+L++  
Sbjct: 38  DFKMVTFSLAGKDYAVDIMQVKEIAKAGSFTYVPNTSPFVLGVYNLRGDIIPIIDLRRFF 97

Query: 63  GYYDDEDLSN--KKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
                       + ++I  V  +  GV+VD +  VI +++  I QPP  +   +++K I+
Sbjct: 98  NIPAPRKSRQAIENMVIVTVEDQTFGVVVDGIDKVIGVSKTTI-QPPHPIFGDINIKYIR 156

Query: 121 GIAKINNGERLLIMLDLDKL 140
           G+  +    +L I+LD+ ++
Sbjct: 157 GV--VEEAGKLYILLDVHRI 174


>gb|AAD45221.1|AF105017_2 (AF105017) chemotaxis protein CheW [Treponema pallidum subsp.
           pertenue]
           Length = 444
           
 Score = 72.6 bits (175), Expect = 2e-12
 Identities = 41/140 (29%), Positives = 77/140 (54%), Gaps = 5/140 (3%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           + ++V F L  +++ ++I +V+EI +    T VPN   FV GV NLRG I  +I+L++  
Sbjct: 27  DFKMVTFSLAGKDYAVDIMQVKEIAKAGSFTYVPNTSPFVLGVYNLRGDIIPIIDLRRFF 86

Query: 63  GYYDDEDLSN--KKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIK 120
                       + ++I  V  +  GV+VD +  VI +++  I QPP  +   +++K I+
Sbjct: 87  NIPAPRKSRQAIENMVIVTVEDQTFGVVVDGIDKVIGVSKTTI-QPPHPIFGDINIKYIR 145

Query: 121 GIAKINNGERLLIMLDLDKL 140
           G+  +    +L I+LD+ ++
Sbjct: 146 GV--VEEAGKLYILLDVHRI 163


>pir||A71865 histidine kinase (mcp coupling protein) - Helicobacter pylori
           (strain J99) >gi|4155569|gb|AAD06563.1| (AE001527)
           histidine kinase - MCP coupling protein [Helicobacter
           pylori J99]
           Length = 165
           
 Score = 71.0 bits (171), Expect = 6e-12
 Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 4   IQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLG 63
           +Q + F +GDEE+ + I  + EI + +  TRVP  P++V GV NLRG +  +I+L+   G
Sbjct: 28  LQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFG 87

Query: 64  YYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGIA 123
              ++   + + ++   N +I G  +   +D I + +  I+   +T+    ++    GI 
Sbjct: 88  LKAEKQNKDTRYLVVRHNDQIAGFFIAFWTDAIRIKQSTIDPVAETVRDNNNL--TYGIG 145

Query: 124 KINNGERLLIMLDLDKLIGESF 145
           K N  +RL+ +L +++++ + F
Sbjct: 146 KQN--DRLVTILRVEEILKKDF 165


>pir||C81447 chemotaxis protein (EC 2.7.3.-) Cj0285c [imported] - Campylobacter
           jejuni (strain NCTC 11168) >gi|6967761|emb|CAB72752.1|
           (AL139074) chemotaxis protein [Campylobacter jejuni]
           Length = 318
           
 Score = 71.0 bits (171), Expect = 6e-12
 Identities = 47/149 (31%), Positives = 82/149 (54%), Gaps = 11/149 (7%)

Query: 3   EIQVVAFRL---GDEE-----FCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITT 54
           E+++V FR+   G ++     + + +SKVREI ++  +T +P  PD++EG+ +LRG +  
Sbjct: 13  EMELVDFRIFKQGHDKVYEGIYGVNVSKVREIIKIPSLTELPGVPDYIEGIFDLRGVVIP 72

Query: 55  VINLKKLLGYYDDEDLSNK-KIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPP-KTLAS 112
           V+NL K +   + E    K ++II E +  ++G IV     +  +    IE     T + 
Sbjct: 73  VVNLAKWMQITEPESTMLKPRVIITEFSNILIGFIVHEAKRIRRINWKDIEPATFSTGSG 132

Query: 113 KVDMKAIKGIAKINNGERLLIMLDLDKLI 141
            +D   I G+ +I N E LLI LDL+ ++
Sbjct: 133 ALDKGKITGVTRIENDEVLLI-LDLESVV 160


>dbj|BAB05981.1| (AP001514) modulation of CheA activity in response to attractants
           (chemotaxis protein) [Bacillus halodurans]
           Length = 305
           
 Score = 71.0 bits (171), Expect = 6e-12
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           E++++ F +    F + + KVREI   +P+T  PN+   +EGVI LR ++  VINL ++L
Sbjct: 16  ELEIIMFSIAGGLFGINVLKVREIINPLPMTETPNSHPHIEGVIRLRQEVIPVINLAQVL 75

Query: 63  GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
                 +    K+IIAE+N   V   V  VS +  ++ +QIE+P +   S        GI
Sbjct: 76  NLPPSSNPQQDKLIIAELNRLKVAFHVHEVSRIHRISWEQIEKPSQLFHS--GHAHTIGI 133

Query: 123 AKINNGERLLIMLDLDK 139
            K+ +  ++ ++LD +K
Sbjct: 134 VKLES--QMALLLDFEK 148


>pir||T45019 chemotaxis protein, CheWIII [imported] - Rhodobacter sphaeroides
           >gi|2293002|emb|CAA04431.1| (AJ000977) chemotaxis
           protein, CheWIII [Rhodobacter sphaeroides]
           Length = 178
           
 Score = 70.2 bits (169), Expect = 1e-11
 Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 6   VVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYY 65
           VV F  G+  + L + +V+EI ++ P+  +PNAP  + G+ ++RG    V++L+ LLG  
Sbjct: 24  VVTFMAGEALYALPVERVQEILDLQPVAPLPNAPAHLLGLCDVRGAGVPVVDLRSLLGLP 83

Query: 66  DDEDLSNKKIIIAEVNG----EIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKG 121
             ED  + +I++  V       +VG+  + V +V  L E +++Q            A+ G
Sbjct: 84  PTEDTGHSRILVTWVASAGARHVVGLKTERVIEVTALDEGRMQQMSSADMLNWTDTAVMG 143

Query: 122 IAKINNGERLLIMLDLDKLIGES 144
           I K N     + +LD+D+L+  S
Sbjct: 144 IGKRNGA--FVTLLDIDRLMDPS 164


>pir||D70170 purine-binding chemotaxis protein (cheW-2) homolog - Lyme disease
           spirochete >gi|2688491|gb|AAC66936.1| (AE001158)
           purine-binding chemotaxis protein (cheW-2) [Borrelia
           burgdorferi]
           Length = 180
           
 Score = 69.9 bits (168), Expect = 1e-11
 Identities = 49/150 (32%), Positives = 84/150 (55%), Gaps = 18/150 (12%)

Query: 5   QVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGY 64
           Q + F L DE + +EI  V E+ E   I+++P  P+++ G+IN RG+I  +I+++K  G 
Sbjct: 13  QYLLFSL-DELYAIEIKYVVEVLEYTKISKIPRTPNYMAGIINNRGKIVPIIDIRKQFGM 71

Query: 65  YD---DED---------LSNKKIIIAEVNGE--IVGVIVDAVSDVITLTEDQIEQPPKTL 110
            D   DED         +SN  I+     G+   +G++VD V++V+ L    I+  PK +
Sbjct: 72  SDRAVDEDDKKRNKGVNISNIIILNLVYEGDEFNLGILVDYVNEVLELDPFSIDDAPK-I 130

Query: 111 ASKVDMKAIKGIAKINNGERLLIMLDLDKL 140
            S  + K I GI K N  ++ +I+L+++ L
Sbjct: 131 GSGFNSKFISGIGKSN--DKFIIILNVENL 158


>sp|P37599|CHEV_BACSU CHEMOTAXIS CHEV PROTEIN >gi|1075832|pir||A55592 cheA
           activity-modulating chemotaxis protein cheV - Bacillus
           subtilis >gi|453378|gb|AAA16526.1| (U05345) CheV
           [Bacillus subtilis] >gi|580837|emb|CAA82701.1| (Z29584)
           CheV [Bacillus subtilis] >gi|2632222|emb|CAA10864.1|
           (AJ222587) CheV protein [Bacillus subtilis]
           >gi|2633772|emb|CAB13274.1| (Z99111) cheV [Bacillus
           subtilis]
           Length = 303
           
 Score = 69.5 bits (167), Expect = 2e-11
 Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 7/140 (5%)

Query: 3   EIQVVAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLL 62
           E+++V F +G+  F + + KVREI + + +T VP++   VEG+I LRG+I  VI+L    
Sbjct: 16  ELEIVKFGVGENAFGINVMKVREIIQPVEVTSVPHSHQHVEGMIKLRGEILPVISLFSFF 75

Query: 63  GYYDDEDLSNKKIIIAEVNGEIVGVIVDAVSDVITLTEDQIEQPPKTLASKVDMKAIKGI 122
           G  + E   ++K I+ E N   +   V +VS +  ++ + IE+P  T  ++   + + GI
Sbjct: 76  G-VEPEGSKDEKYIVTEFNKRKIVFHVGSVSQIHRVSWEAIEKP--TSLNQGMERHLTGI 132

Query: 123 AKINNGERLLIML-DLDKLI 141
            K+   E L+I L D +K+I
Sbjct: 133 IKL---EDLMIFLPDYEKII 149


>pir||B82380 purine-binding chemotaxis protein CheW VCA1094 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9658540|gb|AAF96986.1| (AE004434) purine-binding
           chemotaxis protein CheW [Vibrio cholerae]
           Length = 175
           
 Score = 69.1 bits (166), Expect = 2e-11
 Identities = 46/140 (32%), Positives = 77/140 (54%), Gaps = 11/140 (7%)

Query: 7   VAFRLGDEEFCLEISKVREIKEMMPITRVPNAPDFVEGVINLRGQITTVINLKKLLGYYD 66
           ++F LG E + + +S V EI+     T +P AP FV+GVINLRG I  +I+L++  G   
Sbjct: 31  LSFMLGTELYGVTLSHVEEIRVWEKPTPIPRAPHFVKGVINLRGMIVPIIDLRQRFGLTQ 90

Query: 67  DEDLSNKKIIIAEVNGE----IVGVIVDAVSDVITLTEDQIEQP-PKTLASKVDMKAIKG 121
            E L    ++I     +    ++G++VD+VSDVI     Q + P    +   + +  + G
Sbjct: 91  YEYLPTTVVLILSAREQEQKRLMGLVVDSVSDVI----GQGDMPLHPAIGESMVVPFLSG 146

Query: 122 IAKINNGERLLIMLDLDKLI 141
           I  +N G+ ++ +LD D L+
Sbjct: 147 I--LNVGDEVMSLLDSDALL 164


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.375 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49673469
Number of Sequences: 2977
Number of extensions: 1826381
Number of successful extensions: 5568
Number of sequences better than 1.0e-10: 46
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 5512
Number of HSP's gapped (non-prelim): 50
length of query: 145
length of database: 189,106,746
effective HSP length: 57
effective length of query: 88
effective length of database: 154,992,987
effective search space: 13639382856
effective search space used: 13639382856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)