BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1028 (PAB1028) DE:Hypothetical protein
         (354 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75003 hypothetical protein PAB1028 - Pyrococcus abyssi (st...   679  0.0
pir||G71159 hypothetical protein PH0476 - Pyrococcus horikoshii ...   488  e-137
pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyro...    73  5e-12
pir||C71083 probable purine NTPase - Pyrococcus horikoshii >gi|3...    71  2e-11
pir||A59287 myosin heavy chain - fluke (Schistosoma mansoni) (st...    70  4e-11

>pir||B75003 hypothetical protein PAB1028 - Pyrococcus abyssi (strain Orsay)
           >gi|5458978|emb|CAB50464.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 354
           
 Score =  679 bits (1733), Expect = 0.0
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MNSIVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEF 60
           MNSIVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEF
Sbjct: 1   MNSIVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEF 60

Query: 61  SREINGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERV 120
           SREINGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERV
Sbjct: 61  SREINGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERV 120

Query: 121 DSIDPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPES 180
           DSIDPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPES
Sbjct: 121 DSIDPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPES 180

Query: 181 IRDGLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVY 240
           IRDGLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVY
Sbjct: 181 IRDGLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVY 240

Query: 241 SEITTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPI 300
           SEITTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPI
Sbjct: 241 SEITTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPI 300

Query: 301 EKEFYEKLKIQFEELRKLEQQVQELINALGGNIKEEREDKLEEIKKILKDLGVS 354
           EKEFYEKLKIQFEELRKLEQQVQELINALGGNIKEEREDKLEEIKKILKDLGVS
Sbjct: 301 EKEFYEKLKIQFEELRKLEQQVQELINALGGNIKEEREDKLEEIKKILKDLGVS 354


>pir||G71159 hypothetical protein PH0476 - Pyrococcus horikoshii
           >gi|3256881|dbj|BAA29564.1| (AP000002) 356aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 356
           
 Score =  488 bits (1243), Expect = e-137
 Identities = 240/352 (68%), Positives = 300/352 (85%), Gaps = 2/352 (0%)

Query: 4   IVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEFSRE 63
           I  LI TI  +  A+YY +DI NKVT +YFELK+ V ESEA+I   R  +QEK+EEF RE
Sbjct: 5   IAILIFTIVIIIGALYYVRDITNKVTAKYFELKDLVSESEAKIDNARASLQEKIEEFRRE 64

Query: 64  INGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERVDSI 123
           I   +  I ++KE+   R+ G +K++  ++ E +++KGK+ I+ERLY+KVKELSE ++SI
Sbjct: 65  IKEAEARINNVKEETTKRIEGFDKRLSHLEKEFKEIKGKMNILERLYDKVKELSESINSI 124

Query: 124 DPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPESIRD 183
           +P+ LRE+V+ESVKSE+  EL+EEIE FEEMLEKKKDEELKEFLD+LT+SIDLPPE ++D
Sbjct: 125 EPDKLREDVKESVKSEILEELREEIENFEEMLEKKKDEELKEFLDILTISIDLPPERVKD 184

Query: 184 GLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVYSEI 243
           GL QAK+GLLSLRDISKVYVLTGKG++EF KL++NL+ELLK +RKLAVIA PEDDVYSE+
Sbjct: 185 GLMQAKLGLLSLRDISKVYVLTGKGVEEFEKLKENLVELLKEIRKLAVIAVPEDDVYSEL 244

Query: 244 TTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPIEKE 303
           T+VIVGL+RL+LPMEEDGKELPPEKSFIRIHN IYDLTS+LD +AE++EGPIPVTPIEKE
Sbjct: 245 TSVIVGLRRLRLPMEEDGKELPPEKSFIRIHNQIYDLTSKLDSVAEKVEGPIPVTPIEKE 304

Query: 304 FYEKLKIQFEELRKLEQQVQELINALGGNIKEE--REDKLEEIKKILKDLGV 353
           FYEKLKIQFE L+KLE+QVQEL+  LGG+I+EE  +E KL+EIKKIL+DLG+
Sbjct: 305 FYEKLKIQFENLKKLEKQVQELLATLGGDIEEEDRKEKKLDEIKKILEDLGL 356


>pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyrococcus abyssi
           (strain Orsay) >gi|5457791|emb|CAB49281.1| (AJ248284)
           chromosome segregation protein (smc1) [Pyrococcus
           abyssi]
           Length = 1177
           
 Score = 73.0 bits (176), Expect = 5e-12
 Identities = 82/329 (24%), Positives = 151/329 (44%), Gaps = 32/329 (9%)

Query: 34  ELKEKVEESEARIRETRNQVQEKLEEFSREINGFKREIVDIKEDFNSRVAGLEKKIGSID 93
           ELK+  EE+ AR+     +V+++L++  +E N   R + D+KE      A +E  +G I 
Sbjct: 182 ELKQ-AEENLARVDLLIREVKKQLDKLEKERNDALRYL-DLKERLER--ARVELILGEIK 237

Query: 94  GEIRDLKGKLAIVERLYEKVKELSERVDSIDPESLR--------EEVRESVKSEVTAELK 145
               ++KG    +E++ E++KE+ E+++ I  E +R        EE+ E   SE   ++ 
Sbjct: 238 KVESEIKGNDERIEKIEEEIKEIEEKLEEIAKEIVRKERELKEVEELIEKESSEEALKIT 297

Query: 146 EEIEEFEEM--LEKKKDEELKEFLDLLTLSIDLPPESIRDGLSQAKMGLLSLRDISKVYV 203
            EI E      L K+  E  K+ LD   + +    + ++  LS+ +    ++    K   
Sbjct: 298 REIGEVNSKINLAKRNIEVAKKELDEAQIRLIKAKDELKKVLSEIEKSKGAIARWGKRKE 357

Query: 204 LTGKGLDEFNKLRDNLIELLKSVRKLAVIASPE-DDVYSEITTVIVGLKRLKLPMEEDGK 262
                + E  + R+ L+  L  + +   +A  E D+V  E+       ++     E D K
Sbjct: 358 ALLNKIKELEEERNKLVVKLGEIDRTFAVAREEFDNVVKELENA----RKSLYENEADIK 413

Query: 263 ELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPIEKEFYEKLKIQFEELRKLEQQV 322
            L  EK   R+ + I  L ++L  I E +E          +  EKL+ +  EL  +E ++
Sbjct: 414 RLEAEKE--RLSSRITILKAKLPGIREEVE----------KLREKLEEKKAELSNVENKI 461

Query: 323 QELINALGGNIKEEREDKLEEIKKILKDL 351
              I+     ++EE E K  E++K+  +L
Sbjct: 462 SS-ISQRRRKVEEELEKKTSELQKVSSEL 489


>pir||C71083 probable purine NTPase - Pyrococcus horikoshii
           >gi|3257342|dbj|BAA30025.1| (AP000004) 879aa long
           hypothetical purine NTPase [Pyrococcus horikoshii]
           Length = 879
           
 Score = 70.6 bits (170), Expect = 2e-11
 Identities = 84/341 (24%), Positives = 163/341 (47%), Gaps = 52/341 (15%)

Query: 35  LKEKVEESEARIRETRNQVQEKLEEFSREINGFK------REIVDIKEDFNSRVAGLEKK 88
           L+E++ + E+ I E R + +E LEE  +E+   +      R +++ K+++  +   LEK+
Sbjct: 260 LEERIRQLESGIEEKRKKSKE-LEEVVKELPELEKKETEYRRLIEFKDEYLVKKNELEKR 318

Query: 89  IGSIDG-------EIRDLKGKLAIVERLYEKVKELSERVDSIDP------ESLREEVR-E 134
           +G +         +I+D + K+A +  + E++KE+ E++  ++P      +++R + + E
Sbjct: 319 LGILSNRLQEVKRKIKDAESKVARIRWIEERLKEIQEKIMKLEPRVREFEDAMRLKAQME 378

Query: 135 SVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPESIRDGLSQAKMGLLS 194
           S+KS++     E+I E    LE +K +EL+E +D +T  I    +  +D     ++ ++ 
Sbjct: 379 SLKSKLGGLEPEKINEKLLYLENRK-KELEEEIDKITRKIGELNQRSKD----RRLAIIE 433

Query: 195 LRDISKVYVLTGKGLDEFNK---LRDNLIELLKSVRKLAVIASPEDDVYSEITTVIVGLK 251
           L+       + G+ L E +K   LR   +EL    +++    + E  + +E   V   L 
Sbjct: 434 LKKARGKCPVCGRELTEEHKADLLRKYSLELSSIEKEIQEAKALERQLRAEFRKVENELS 493

Query: 252 RLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPIEKEFYEKLKIQ 311
           RL               S   I + I ++  RL KI       +     +KE YE LK +
Sbjct: 494 RL--------------SSLKTIADQIIEIRERLSKI------NLEDLKRDKEEYELLKSE 533

Query: 312 FEELRKLEQQVQELINALGGNIKEEREDKLE-EIKKILKDL 351
             +L+   + +++ +N L  N  +    KLE EI K  K+L
Sbjct: 534 SNKLKGEVESLKKEVNEL--NDYKNESTKLEIEIDKAKKEL 572


>pir||A59287 myosin heavy chain - fluke (Schistosoma mansoni) (strain Brazilian
            LE) >gi|161044|gb|AAA29905.1| (L01634) myosin heavy chain
            [Schistosoma mansoni]
            Length = 1940
            
 Score = 69.9 bits (168), Expect = 4e-11
 Identities = 71/344 (20%), Positives = 155/344 (44%), Gaps = 42/344 (12%)

Query: 26   NKVTNRYFELKEKVEESEARIRETRNQVQEKLEEFSREINGFKREIVD---IKEDFNSRV 82
            NK+  +     +++EE+ AR ++ R  V++   +   ++   +  + D   +K D   ++
Sbjct: 1007 NKLKAKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQL 1066

Query: 83   AGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERVDSIDPESLREEVRESVKSEVTA 142
               E +IG + G+  D +G   +V +L  K+KEL  R+  ++ +   E    S   +   
Sbjct: 1067 RRKEAEIGGLSGKFEDEQG---LVAQLQRKIKELQTRIQELEEDLEAERAARSKAEKSRQ 1123

Query: 143  ELKEEIEEFEEMLEK-------KKDEELKEFLDLLTLSIDLPPESIRDGLSQAKMGLLSL 195
            +L+ E+EE  + LE+       + D   K   +L+ L  DL      D   Q +  + ++
Sbjct: 1124 QLESELEEVVDRLEEQDGATAAQSDLTKKREAELMKLKRDL-----EDTRLQNEQAIATM 1178

Query: 196  RDISKVYVLTGKGLDEFNKLRDNLIEL----LKSVRKLAVIASPEDDVYSEITTVIVGLK 251
            R          K  D  N+L D L +      K+ ++ +   +  DD ++++ +++    
Sbjct: 1179 RK---------KQSDAINELADQLDQANKAKAKAEKERSQFKAELDDAHNQVDSIM---- 1225

Query: 252  RLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAE-RIEGPIPVTPIEKEFYEKLKI 310
            + KL  E+  K L  E     +   + + T  L++ A  +      V+ ++++  E+ + 
Sbjct: 1226 KAKLNSEKTVKAL--ESQLQEVSVKLDEATRNLNEQASTKARSSQEVSELQRQL-EEAES 1282

Query: 311  QFEELRKLEQQVQELINALGGNIKEEREDKLE---EIKKILKDL 351
            Q  +L K++QQ+   +     ++++E   K +   E++ +  DL
Sbjct: 1283 QLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDL 1326


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.136    0.351 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120292337
Number of Sequences: 2977
Number of extensions: 5274951
Number of successful extensions: 45956
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 45867
Number of HSP's gapped (non-prelim): 40
length of query: 354
length of database: 189,106,746
effective HSP length: 64
effective length of query: 290
effective length of database: 150,803,578
effective search space: 43733037620
effective search space used: 43733037620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 165 (68.7 bits)