BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1028 (PAB1028) DE:Hypothetical protein
(354 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75003 hypothetical protein PAB1028 - Pyrococcus abyssi (st... 679 0.0
pir||G71159 hypothetical protein PH0476 - Pyrococcus horikoshii ... 488 e-137
pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyro... 73 5e-12
pir||C71083 probable purine NTPase - Pyrococcus horikoshii >gi|3... 71 2e-11
pir||A59287 myosin heavy chain - fluke (Schistosoma mansoni) (st... 70 4e-11
>pir||B75003 hypothetical protein PAB1028 - Pyrococcus abyssi (strain Orsay)
>gi|5458978|emb|CAB50464.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 679 bits (1733), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MNSIVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEF 60
MNSIVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEF
Sbjct: 1 MNSIVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEF 60
Query: 61 SREINGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERV 120
SREINGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERV
Sbjct: 61 SREINGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERV 120
Query: 121 DSIDPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPES 180
DSIDPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPES
Sbjct: 121 DSIDPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPES 180
Query: 181 IRDGLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVY 240
IRDGLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVY
Sbjct: 181 IRDGLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVY 240
Query: 241 SEITTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPI 300
SEITTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPI
Sbjct: 241 SEITTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPI 300
Query: 301 EKEFYEKLKIQFEELRKLEQQVQELINALGGNIKEEREDKLEEIKKILKDLGVS 354
EKEFYEKLKIQFEELRKLEQQVQELINALGGNIKEEREDKLEEIKKILKDLGVS
Sbjct: 301 EKEFYEKLKIQFEELRKLEQQVQELINALGGNIKEEREDKLEEIKKILKDLGVS 354
>pir||G71159 hypothetical protein PH0476 - Pyrococcus horikoshii
>gi|3256881|dbj|BAA29564.1| (AP000002) 356aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 356
Score = 488 bits (1243), Expect = e-137
Identities = 240/352 (68%), Positives = 300/352 (85%), Gaps = 2/352 (0%)
Query: 4 IVPLIITIAGVSIAIYYAKDIANKVTNRYFELKEKVEESEARIRETRNQVQEKLEEFSRE 63
I LI TI + A+YY +DI NKVT +YFELK+ V ESEA+I R +QEK+EEF RE
Sbjct: 5 IAILIFTIVIIIGALYYVRDITNKVTAKYFELKDLVSESEAKIDNARASLQEKIEEFRRE 64
Query: 64 INGFKREIVDIKEDFNSRVAGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERVDSI 123
I + I ++KE+ R+ G +K++ ++ E +++KGK+ I+ERLY+KVKELSE ++SI
Sbjct: 65 IKEAEARINNVKEETTKRIEGFDKRLSHLEKEFKEIKGKMNILERLYDKVKELSESINSI 124
Query: 124 DPESLREEVRESVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPESIRD 183
+P+ LRE+V+ESVKSE+ EL+EEIE FEEMLEKKKDEELKEFLD+LT+SIDLPPE ++D
Sbjct: 125 EPDKLREDVKESVKSEILEELREEIENFEEMLEKKKDEELKEFLDILTISIDLPPERVKD 184
Query: 184 GLSQAKMGLLSLRDISKVYVLTGKGLDEFNKLRDNLIELLKSVRKLAVIASPEDDVYSEI 243
GL QAK+GLLSLRDISKVYVLTGKG++EF KL++NL+ELLK +RKLAVIA PEDDVYSE+
Sbjct: 185 GLMQAKLGLLSLRDISKVYVLTGKGVEEFEKLKENLVELLKEIRKLAVIAVPEDDVYSEL 244
Query: 244 TTVIVGLKRLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPIEKE 303
T+VIVGL+RL+LPMEEDGKELPPEKSFIRIHN IYDLTS+LD +AE++EGPIPVTPIEKE
Sbjct: 245 TSVIVGLRRLRLPMEEDGKELPPEKSFIRIHNQIYDLTSKLDSVAEKVEGPIPVTPIEKE 304
Query: 304 FYEKLKIQFEELRKLEQQVQELINALGGNIKEE--REDKLEEIKKILKDLGV 353
FYEKLKIQFE L+KLE+QVQEL+ LGG+I+EE +E KL+EIKKIL+DLG+
Sbjct: 305 FYEKLKIQFENLKKLEKQVQELLATLGGDIEEEDRKEKKLDEIKKILEDLGL 356
>pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyrococcus abyssi
(strain Orsay) >gi|5457791|emb|CAB49281.1| (AJ248284)
chromosome segregation protein (smc1) [Pyrococcus
abyssi]
Length = 1177
Score = 73.0 bits (176), Expect = 5e-12
Identities = 82/329 (24%), Positives = 151/329 (44%), Gaps = 32/329 (9%)
Query: 34 ELKEKVEESEARIRETRNQVQEKLEEFSREINGFKREIVDIKEDFNSRVAGLEKKIGSID 93
ELK+ EE+ AR+ +V+++L++ +E N R + D+KE A +E +G I
Sbjct: 182 ELKQ-AEENLARVDLLIREVKKQLDKLEKERNDALRYL-DLKERLER--ARVELILGEIK 237
Query: 94 GEIRDLKGKLAIVERLYEKVKELSERVDSIDPESLR--------EEVRESVKSEVTAELK 145
++KG +E++ E++KE+ E+++ I E +R EE+ E SE ++
Sbjct: 238 KVESEIKGNDERIEKIEEEIKEIEEKLEEIAKEIVRKERELKEVEELIEKESSEEALKIT 297
Query: 146 EEIEEFEEM--LEKKKDEELKEFLDLLTLSIDLPPESIRDGLSQAKMGLLSLRDISKVYV 203
EI E L K+ E K+ LD + + + ++ LS+ + ++ K
Sbjct: 298 REIGEVNSKINLAKRNIEVAKKELDEAQIRLIKAKDELKKVLSEIEKSKGAIARWGKRKE 357
Query: 204 LTGKGLDEFNKLRDNLIELLKSVRKLAVIASPE-DDVYSEITTVIVGLKRLKLPMEEDGK 262
+ E + R+ L+ L + + +A E D+V E+ ++ E D K
Sbjct: 358 ALLNKIKELEEERNKLVVKLGEIDRTFAVAREEFDNVVKELENA----RKSLYENEADIK 413
Query: 263 ELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPIEKEFYEKLKIQFEELRKLEQQV 322
L EK R+ + I L ++L I E +E + EKL+ + EL +E ++
Sbjct: 414 RLEAEKE--RLSSRITILKAKLPGIREEVE----------KLREKLEEKKAELSNVENKI 461
Query: 323 QELINALGGNIKEEREDKLEEIKKILKDL 351
I+ ++EE E K E++K+ +L
Sbjct: 462 SS-ISQRRRKVEEELEKKTSELQKVSSEL 489
>pir||C71083 probable purine NTPase - Pyrococcus horikoshii
>gi|3257342|dbj|BAA30025.1| (AP000004) 879aa long
hypothetical purine NTPase [Pyrococcus horikoshii]
Length = 879
Score = 70.6 bits (170), Expect = 2e-11
Identities = 84/341 (24%), Positives = 163/341 (47%), Gaps = 52/341 (15%)
Query: 35 LKEKVEESEARIRETRNQVQEKLEEFSREINGFK------REIVDIKEDFNSRVAGLEKK 88
L+E++ + E+ I E R + +E LEE +E+ + R +++ K+++ + LEK+
Sbjct: 260 LEERIRQLESGIEEKRKKSKE-LEEVVKELPELEKKETEYRRLIEFKDEYLVKKNELEKR 318
Query: 89 IGSIDG-------EIRDLKGKLAIVERLYEKVKELSERVDSIDP------ESLREEVR-E 134
+G + +I+D + K+A + + E++KE+ E++ ++P +++R + + E
Sbjct: 319 LGILSNRLQEVKRKIKDAESKVARIRWIEERLKEIQEKIMKLEPRVREFEDAMRLKAQME 378
Query: 135 SVKSEVTAELKEEIEEFEEMLEKKKDEELKEFLDLLTLSIDLPPESIRDGLSQAKMGLLS 194
S+KS++ E+I E LE +K +EL+E +D +T I + +D ++ ++
Sbjct: 379 SLKSKLGGLEPEKINEKLLYLENRK-KELEEEIDKITRKIGELNQRSKD----RRLAIIE 433
Query: 195 LRDISKVYVLTGKGLDEFNK---LRDNLIELLKSVRKLAVIASPEDDVYSEITTVIVGLK 251
L+ + G+ L E +K LR +EL +++ + E + +E V L
Sbjct: 434 LKKARGKCPVCGRELTEEHKADLLRKYSLELSSIEKEIQEAKALERQLRAEFRKVENELS 493
Query: 252 RLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAERIEGPIPVTPIEKEFYEKLKIQ 311
RL S I + I ++ RL KI + +KE YE LK +
Sbjct: 494 RL--------------SSLKTIADQIIEIRERLSKI------NLEDLKRDKEEYELLKSE 533
Query: 312 FEELRKLEQQVQELINALGGNIKEEREDKLE-EIKKILKDL 351
+L+ + +++ +N L N + KLE EI K K+L
Sbjct: 534 SNKLKGEVESLKKEVNEL--NDYKNESTKLEIEIDKAKKEL 572
>pir||A59287 myosin heavy chain - fluke (Schistosoma mansoni) (strain Brazilian
LE) >gi|161044|gb|AAA29905.1| (L01634) myosin heavy chain
[Schistosoma mansoni]
Length = 1940
Score = 69.9 bits (168), Expect = 4e-11
Identities = 71/344 (20%), Positives = 155/344 (44%), Gaps = 42/344 (12%)
Query: 26 NKVTNRYFELKEKVEESEARIRETRNQVQEKLEEFSREINGFKREIVD---IKEDFNSRV 82
NK+ + +++EE+ AR ++ R V++ + ++ + + D +K D ++
Sbjct: 1007 NKLKAKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQL 1066
Query: 83 AGLEKKIGSIDGEIRDLKGKLAIVERLYEKVKELSERVDSIDPESLREEVRESVKSEVTA 142
E +IG + G+ D +G +V +L K+KEL R+ ++ + E S +
Sbjct: 1067 RRKEAEIGGLSGKFEDEQG---LVAQLQRKIKELQTRIQELEEDLEAERAARSKAEKSRQ 1123
Query: 143 ELKEEIEEFEEMLEK-------KKDEELKEFLDLLTLSIDLPPESIRDGLSQAKMGLLSL 195
+L+ E+EE + LE+ + D K +L+ L DL D Q + + ++
Sbjct: 1124 QLESELEEVVDRLEEQDGATAAQSDLTKKREAELMKLKRDL-----EDTRLQNEQAIATM 1178
Query: 196 RDISKVYVLTGKGLDEFNKLRDNLIEL----LKSVRKLAVIASPEDDVYSEITTVIVGLK 251
R K D N+L D L + K+ ++ + + DD ++++ +++
Sbjct: 1179 RK---------KQSDAINELADQLDQANKAKAKAEKERSQFKAELDDAHNQVDSIM---- 1225
Query: 252 RLKLPMEEDGKELPPEKSFIRIHNMIYDLTSRLDKIAE-RIEGPIPVTPIEKEFYEKLKI 310
+ KL E+ K L E + + + T L++ A + V+ ++++ E+ +
Sbjct: 1226 KAKLNSEKTVKAL--ESQLQEVSVKLDEATRNLNEQASTKARSSQEVSELQRQL-EEAES 1282
Query: 311 QFEELRKLEQQVQELINALGGNIKEEREDKLE---EIKKILKDL 351
Q +L K++QQ+ + ++++E K + E++ + DL
Sbjct: 1283 QLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDL 1326
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.313 0.136 0.351
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120292337
Number of Sequences: 2977
Number of extensions: 5274951
Number of successful extensions: 45956
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 45867
Number of HSP's gapped (non-prelim): 40
length of query: 354
length of database: 189,106,746
effective HSP length: 64
effective length of query: 290
effective length of database: 150,803,578
effective search space: 43733037620
effective search space used: 43733037620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 165 (68.7 bits)