BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1030 (PAB1030) DE:Hypothetical protein
         (224 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75003 hypothetical protein PAB1030 - Pyrococcus abyssi (st...   463  e-130
pir||C71159 hypothetical protein PH0472 - Pyrococcus horikoshii ...   392  e-108

>pir||D75003 hypothetical protein PAB1030 - Pyrococcus abyssi (strain Orsay)
           >gi|5458980|emb|CAB50466.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 224
           
 Score =  463 bits (1179), Expect = e-130
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MKLLPTVAYLRVQRQVYIGYSMALAGWIGEHLLNELSLPKPKFIRRALRKLGFSFSSEEG 60
           MKLLPTVAYLRVQRQVYIGYSMALAGWIGEHLLNELSLPKPKFIRRALRKLGFSFSSEEG
Sbjct: 1   MKLLPTVAYLRVQRQVYIGYSMALAGWIGEHLLNELSLPKPKFIRRALRKLGFSFSSEEG 60

Query: 61  EDNFTMFYTKGNTGLTASWDVENDKLFLQIFPLRGRLSKGITVRAEYIEFYDQFVVSIEP 120
           EDNFTMFYTKGNTGLTASWDVENDKLFLQIFPLRGRLSKGITVRAEYIEFYDQFVVSIEP
Sbjct: 61  EDNFTMFYTKGNTGLTASWDVENDKLFLQIFPLRGRLSKGITVRAEYIEFYDQFVVSIEP 120

Query: 121 AQKLPPKIRSIGINPLILEDNIPLSIPYWGILYEDWEEDLKLLVMLDEIFDKLYREEYRC 180
           AQKLPPKIRSIGINPLILEDNIPLSIPYWGILYEDWEEDLKLLVMLDEIFDKLYREEYRC
Sbjct: 121 AQKLPPKIRSIGINPLILEDNIPLSIPYWGILYEDWEEDLKLLVMLDEIFDKLYREEYRC 180

Query: 181 PICFSPLREENGVLICDNCGFKFTPENRFEKVIEEIESEELSSP 224
           PICFSPLREENGVLICDNCGFKFTPENRFEKVIEEIESEELSSP
Sbjct: 181 PICFSPLREENGVLICDNCGFKFTPENRFEKVIEEIESEELSSP 224


>pir||C71159 hypothetical protein PH0472 - Pyrococcus horikoshii
           >gi|3256877|dbj|BAA29560.1| (AP000002) 225aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 225
           
 Score =  392 bits (996), Expect = e-108
 Identities = 182/223 (81%), Positives = 207/223 (92%), Gaps = 1/223 (0%)

Query: 1   MKLLPTVAYLRVQRQVYIGYSMALAGWIGEHLLNELSLPKPKFIRRALRKLGFSFSSEE- 59
           MKL+P++AYL+VQRQVY+GYSMALAGWIGEHL+ ELSLPKPKFIRRALRKLGFSFSSEE 
Sbjct: 1   MKLVPSIAYLKVQRQVYVGYSMALAGWIGEHLIQELSLPKPKFIRRALRKLGFSFSSEEE 60

Query: 60  GEDNFTMFYTKGNTGLTASWDVENDKLFLQIFPLRGRLSKGITVRAEYIEFYDQFVVSIE 119
           GE+ FTMFYT+G+ GLT+SWDVEN+++F+QIFPLRGRLSKGIT+R EYIEFYDQ VVSIE
Sbjct: 61  GENTFTMFYTRGSIGLTSSWDVENERMFIQIFPLRGRLSKGITIRGEYIEFYDQHVVSIE 120

Query: 120 PAQKLPPKIRSIGINPLILEDNIPLSIPYWGILYEDWEEDLKLLVMLDEIFDKLYREEYR 179
           PAQ+LP  I+S+GINPLILEDN P SIPYWG+LYEDWEEDLKLLVML++IF+KLYREEYR
Sbjct: 121 PAQRLPQGIKSLGINPLILEDNFPTSIPYWGMLYEDWEEDLKLLVMLNDIFNKLYREEYR 180

Query: 180 CPICFSPLREENGVLICDNCGFKFTPENRFEKVIEEIESEELS 222
           CPICFSPLREENGVL+CDNCGFKF PE+RFE  +EEI  EE S
Sbjct: 181 CPICFSPLREENGVLVCDNCGFKFIPEDRFEVTLEEITEEESS 223


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.433 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89597687
Number of Sequences: 2977
Number of extensions: 3901446
Number of successful extensions: 8471
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8468
Number of HSP's gapped (non-prelim): 2
length of query: 224
length of database: 189,106,746
effective HSP length: 51
effective length of query: 173
effective length of database: 158,583,909
effective search space: 27435016257
effective search space used: 27435016257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)