BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1033 (PAB1033) DE:Hypothetical protein
         (219 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75004 hypothetical protein PAB1033 - Pyrococcus abyssi (st...   445  e-124

>pir||A75004 hypothetical protein PAB1033 - Pyrococcus abyssi (strain Orsay)
           >gi|5458985|emb|CAB50471.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 219
           
 Score =  445 bits (1133), Expect = e-124
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MKKDVILHAILRELYGEERFHERYLFKGGTCLIKCYLSYYRFSVDLDFTFPLRNRLSRSG 60
           MKKDVILHAILRELYGEERFHERYLFKGGTCLIKCYLSYYRFSVDLDFTFPLRNRLSRSG
Sbjct: 1   MKKDVILHAILRELYGEERFHERYLFKGGTCLIKCYLSYYRFSVDLDFTFPLRNRLSRSG 60

Query: 61  RRKLISSEVRWLSEKLSYIAEELGLNFRPFEGNSYDRNFVHFEGNENRKIVFFHLFMPTG 120
           RRKLISSEVRWLSEKLSYIAEELGLNFRPFEGNSYDRNFVHFEGNENRKIVFFHLFMPTG
Sbjct: 61  RRKLISSEVRWLSEKLSYIAEELGLNFRPFEGNSYDRNFVHFEGNENRKIVFFHLFMPTG 120

Query: 121 EVVKIEVNFFEPVLFEEKKVLAKTLLDGVKLEDEEKTYFFEELERYLTLSVTAYSPEEIL 180
           EVVKIEVNFFEPVLFEEKKVLAKTLLDGVKLEDEEKTYFFEELERYLTLSVTAYSPEEIL
Sbjct: 121 EVVKIEVNFFEPVLFEEKKVLAKTLLDGVKLEDEEKTYFFEELERYLTLSVTAYSPEEIL 180

Query: 181 AEKIRAILTRRIQKLRDFYDVFMLHKAGYDYSNVIDEAL 219
           AEKIRAILTRRIQKLRDFYDVFMLHKAGYDYSNVIDEAL
Sbjct: 181 AEKIRAILTRRIQKLRDFYDVFMLHKAGYDYSNVIDEAL 219


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.144    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84145592
Number of Sequences: 2977
Number of extensions: 3591579
Number of successful extensions: 9351
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9350
Number of HSP's gapped (non-prelim): 1
length of query: 219
length of database: 189,106,746
effective HSP length: 53
effective length of query: 166
effective length of database: 157,386,935
effective search space: 26126231210
effective search space used: 26126231210
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)