BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1035 (PAB1035) DE:Hypothetical protein
(516 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75004 hypothetical protein PAB1035 - Pyrococcus abyssi (st... 1059 0.0
pir||D71158 hypothetical protein PH0466 - Pyrococcus horikoshii ... 696 0.0
pir||D72349 conserved hypothetical protein - Thermotoga maritima... 280 3e-74
pir||B69222 conserved hypothetical protein MTH912 - Methanobacte... 232 9e-60
>pir||B75004 hypothetical protein PAB1035 - Pyrococcus abyssi (strain Orsay)
>gi|5458986|emb|CAB50472.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 516
Score = 1059 bits (2709), Expect = 0.0
Identities = 516/516 (100%), Positives = 516/516 (100%)
Query: 1 MKITVYDGANTIGGTKIHIEDGNNGIFLDFGMNFAKYSMYYEEFLRERTKRGIYDLWMLN 60
MKITVYDGANTIGGTKIHIEDGNNGIFLDFGMNFAKYSMYYEEFLRERTKRGIYDLWMLN
Sbjct: 1 MKITVYDGANTIGGTKIHIEDGNNGIFLDFGMNFAKYSMYYEEFLRERTKRGIYDLWMLN 60
Query: 61 LIPRLNIYRSDLIPNDLAQEVSRYPRIPVNAVLISHAHLDHVGNVALLDEKIPIVASPTT 120
LIPRLNIYRSDLIPNDLAQEVSRYPRIPVNAVLISHAHLDHVGNVALLDEKIPIVASPTT
Sbjct: 61 LIPRLNIYRSDLIPNDLAQEVSRYPRIPVNAVLISHAHLDHVGNVALLDEKIPIVASPTT 120
Query: 121 LVILKALRDTSRGNNLGMETPYYTPRKRTEGNPPLVEANTGKYYPTRDLILTDKFSEEVR 180
LVILKALRDTSRGNNLGMETPYYTPRKRTEGNPPLVEANTGKYYPTRDLILTDKFSEEVR
Sbjct: 121 LVILKALRDTSRGNNLGMETPYYTPRKRTEGNPPLVEANTGKYYPTRDLILTDKFSEEVR 180
Query: 181 RFMRWRAEVELANKNNIKRIKLGKVQNLEESYLGFEVRAYPVDHSIYGATAYIIEGDVSV 240
RFMRWRAEVELANKNNIKRIKLGKVQNLEESYLGFEVRAYPVDHSIYGATAYIIEGDVSV
Sbjct: 181 RFMRWRAEVELANKNNIKRIKLGKVQNLEESYLGFEVRAYPVDHSIYGATAYIIEGDVSV 240
Query: 241 AYTGDFRLHGKNGNLTRKFIKAAKNASILITEGTRVSRKNDDFNVSEKEVYENALRIVEE 300
AYTGDFRLHGKNGNLTRKFIKAAKNASILITEGTRVSRKNDDFNVSEKEVYENALRIVEE
Sbjct: 241 AYTGDFRLHGKNGNLTRKFIKAAKNASILITEGTRVSRKNDDFNVSEKEVYENALRIVEE 300
Query: 301 AKGLVIADFSLRNFERLESFKRIAEKTGRELVITTKEAYYLHALKTAGEADHLREVKIYE 360
AKGLVIADFSLRNFERLESFKRIAEKTGRELVITTKEAYYLHALKTAGEADHLREVKIYE
Sbjct: 301 AKGLVIADFSLRNFERLESFKRIAEKTGRELVITTKEAYYLHALKTAGEADHLREVKIYE 360
Query: 361 DSKTKPEKWEKWILSKYNELKVTPEEITREQENYILCFSFYDMPKLLDIMPSGGVYIYSS 420
DSKTKPEKWEKWILSKYNELKVTPEEITREQENYILCFSFYDMPKLLDIMPSGGVYIYSS
Sbjct: 361 DSKTKPEKWEKWILSKYNELKVTPEEITREQENYILCFSFYDMPKLLDIMPSGGVYIYSS 420
Query: 421 SEAFTEEQVFSFLRLWNWLQYFGFEVHGFKVDEHGRPIFEKGFHASGHISKDELVKVIEE 480
SEAFTEEQVFSFLRLWNWLQYFGFEVHGFKVDEHGRPIFEKGFHASGHISKDELVKVIEE
Sbjct: 421 SEAFTEEQVFSFLRLWNWLQYFGFEVHGFKVDEHGRPIFEKGFHASGHISKDELVKVIEE 480
Query: 481 VDPDYIVPVHTENPEWFREVWEDKAIILRNGDSWEI 516
VDPDYIVPVHTENPEWFREVWEDKAIILRNGDSWEI
Sbjct: 481 VDPDYIVPVHTENPEWFREVWEDKAIILRNGDSWEI 516
>pir||D71158 hypothetical protein PH0466 - Pyrococcus horikoshii
>gi|3256870|dbj|BAA29553.1| (AP000002) 514aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 514
Score = 696 bits (1777), Expect = 0.0
Identities = 343/518 (66%), Positives = 417/518 (80%), Gaps = 7/518 (1%)
Query: 1 MKITVYDGANTIGGTKIHIEDGNNGIFLDFGMNFAKYSMYYEEFLRERTKRGIYDLWMLN 60
M+IT+YDGA+TIGGTKIHIE+ NG+FLDFGMNFA+YS+YYEE+L ERT RGIYDLW LN
Sbjct: 2 MRITIYDGADTIGGTKIHIEENENGLFLDFGMNFARYSLYYEEYLGERTSRGIYDLWKLN 61
Query: 61 LIPRLNIYRSDLIPNDLAQEVSRYPRIPVNAVLISHAHLDHVGNVALLDEKIPIVASPTT 120
LIP+LNIYR DLIP DLAQEV +YPR VNAVLISHAHLDHVGN+ LLDE I IV SP T
Sbjct: 62 LIPKLNIYRRDLIPKDLAQEVGQYPRPQVNAVLISHAHLDHVGNITLLDENISIVGSPMT 121
Query: 121 LVILKALRDTSRG-NNLGMETPYYTPRKRTEGNPPLVEANTGKYYPTRDLILTDKFSEEV 179
+ ILKA+ DTS G N+ G+E PYY RK + ++EA+ YP+R ++LT+ + +
Sbjct: 122 ITILKAINDTSTGGNHFGVELPYYKVRKIKDPEGYIIEADRKADYPSRKVVLTEHV-QSL 180
Query: 180 RRFMRWRAEVELANKNNIKRIKLGKVQNLEESYLGFEVRAYPVDHSIYGATAYIIEGDVS 239
F+ +R E K+I +V+ LEE LGFEV+A+ VDHSIYGATAYIIEGDVS
Sbjct: 181 HEFLFYRPGQE---SPKAKKIIPNEVKTLEEEDLGFEVKAFNVDHSIYGATAYIIEGDVS 237
Query: 240 VAYTGDFRLHGKNGNLTRKFIKAAKNASILITEGTRVSRKNDDFNVSEKEVYENALRIVE 299
+AYTGDFRLHG+ G+ TRKFIKAAK++SILITEGTRV R ++ NVSE+EVYENAL+IVE
Sbjct: 238 LAYTGDFRLHGRKGDETRKFIKAAKSSSILITEGTRVGR-DEHGNVSEQEVYENALKIVE 296
Query: 300 EAKGLVIADFSLRNFERLESFKRIAEKTGRELVITTKEAYYLHALKTAGEADHLREVKIY 359
EAKGLVIADFS RNFERLE FK+IAE TGRELVIT K+AY+LHAL+ + L++++IY
Sbjct: 297 EAKGLVIADFSPRNFERLEIFKKIAENTGRELVITAKDAYFLHALQLVDNVNRLKDLRIY 356
Query: 360 EDSKTKPEKWEKWIL-SKYNELKVTPEEITREQENYILCFSFYDMPKLLDIMPSGGVYIY 418
+ K +KWE ++ Y E ++P EI + QENYILCFSFYDMP LLDIMP GG YIY
Sbjct: 357 GNLKATQDKWESIVVWGNYAEQYISPFEIRKNQENYILCFSFYDMPHLLDIMPDGGTYIY 416
Query: 419 SSSEAFTEEQVFSFLRLWNWLQYFGFEVHGFKVDEHGRPIFEKGFHASGHISKDELVKVI 478
SSSEAF EEQVFSFLRLWNWLQYFGFEVHGF+VD++G+PIFEKGFHASGHIS++EL KVI
Sbjct: 417 SSSEAFGEEQVFSFLRLWNWLQYFGFEVHGFRVDKYGKPIFEKGFHASGHISREELRKVI 476
Query: 479 EEVDPDYIVPVHTENPEWFREVWEDKAIILRNGDSWEI 516
+E+DPDY++PVHTE PE F+ + ++ I+L+NG+SWEI
Sbjct: 477 DEIDPDYVIPVHTEKPELFKWAFGERVILLKNGESWEI 514
>pir||D72349 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981186|gb|AAD35747.1|AE001739_10 (AE001739)
conserved hypothetical protein [Thermotoga maritima]
Length = 522
Score = 280 bits (708), Expect = 3e-74
Identities = 182/542 (33%), Positives = 285/542 (52%), Gaps = 61/542 (11%)
Query: 1 MKITVYDGANTIGGTKIHIEDG-NNGIFLDFGMNFAKYSMYYEEFLRERTKRGIYDLWML 59
M+I ++DG IGG KI + D N+G LDFG+NF+++ ++EEFL RT + ++DL L
Sbjct: 1 MRIEIFDGHRNIGGNKIRVVDSENDGFLLDFGLNFSRWGEFFEEFLNPRTGKILHDLLKL 60
Query: 60 NLIPRLNIYRSDLIPNDLAQEVSRYPRIPVNAVLISHAHLDHVGNVALLDEKIPIVASPT 119
++PRLNIYR DL V+ + +SHAH DH G V L+DEKIP++ +
Sbjct: 61 KMVPRLNIYRDDLFDGKFEDPVNHA------FLFLSHAHADHTGMVGLIDEKIPLLMTGE 114
Query: 120 TLVILKALRDTSRGNNLGMETPYYTPRKRTEGNPPLVEANTGKYYPTRDLILT---DKFS 176
T +++A TS N L +KR + N +E + DL ++ K +
Sbjct: 115 TFAVMRASVYTSNSNVLTQ----LGGKKRRKVNDKDLENGIRE-----DLTVSPGNSKNA 165
Query: 177 EEVRRFMRWRAEVELANKNNIKRIKLGKVQNLEESYLGFEVRAYPVDHSIYGATAYIIE- 235
E++ R + + +E + + + V +L ++ L E PV HS+ GA
Sbjct: 166 EKLTRRVSFPKNIEFNDD-----LTVVDVNSLWKNELFVE----PVYHSVIGAAGLAARV 216
Query: 236 GDVSVAYTGDFRLHGKNGNLTRKFIKAA--------------------KNASILITEGTR 275
D+ +AYTGDFR + R ++ K +LI EGTR
Sbjct: 217 DDLWLAYTGDFRTGPETAEEERYWLDTLGEKRLALSLRTSRFFENLKDKRPLVLIVEGTR 276
Query: 276 VSRKNDDFNVSEKEVYENALRIVEEAKGLVIADFSLRNFERLESFKRIAEKTGRELVITT 335
V+R+ + N +EK+V+ENA+R+ K L++ DF +R+ ERL +F ++ + R LV+
Sbjct: 277 VTREENIEN-TEKDVFENAMRVFRGTKNLILVDFPIRHLERLFTFLKVCMENDRRLVLMP 335
Query: 336 KEAYYLHALKTAGEADHLRE-----VKIYEDSKTKPEKWEKWILSKYNE--LKVTPEEIT 388
K+ YL ++ L + V++Y K EK L + E + ++PEEI
Sbjct: 336 KDYAYLLEMERVEPLWKLTDEERSFVRVYHPGKVTYINLEKDALLRAREEGILLSPEEIN 395
Query: 389 REQENYILCFSFYDMPKLLDI---MPSGGVYIYSSSEAFTEEQVFSFLRLWNWLQYFGFE 445
E + + ++D P +LD+ + +G VYI+S+SEA+TEEQ R NWL+YF
Sbjct: 396 LHPEKHTMVAGYWDFPHILDLDERVLNGAVYIHSTSEAYTEEQEIDAKRFMNWLRYFNII 455
Query: 446 VHGFKVDEHGRPIFEKGFHASGHISKDELVKVIEEVDPDYIVPVHTENPEWFREVWEDKA 505
G + + +G +F K FHASGH+S L K++ E++PDYIVPVHT NP WF E W ++
Sbjct: 456 PFGIR-EVNGNIVFTKEFHASGHVSPQGLEKILNELNPDYIVPVHTLNPGWFVERWGERV 514
Query: 506 II 507
++
Sbjct: 515 LL 516
>pir||B69222 conserved hypothetical protein MTH912 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622008|gb|AAB85410.1| (AE000866) unknown
[Methanobacterium thermoautotrophicum]
Length = 521
Score = 232 bits (585), Expect = 9e-60
Identities = 161/538 (29%), Positives = 260/538 (47%), Gaps = 86/538 (15%)
Query: 1 MKITVYDGANTIGGTKIHIEDGNNGIFLDFGMNFAKYSMYYEEFLRERTKRGIYDLWMLN 60
M Y G + IGG +I + +GIFLDFG F ++Y++EFL+ R+ GI DL L
Sbjct: 31 MDFRFYGGVDEIGGNRIEVSCNGDGIFLDFGKRFNIENLYFDEFLQPRSFSGIADLIELE 90
Query: 61 LIPRL-NIYRSDLIPNDLAQEVSRYPRIPVNAVLISHAHLDHVGNVALLDEKIPIVASPT 119
+P + +YR D + L P V+ +L+SH HLDH G + + IP +
Sbjct: 91 ALPWIPGLYREDQV-RYLGMRFEDEPA--VSGILLSHPHLDHAGCLKYIRHDIPFYMTEE 147
Query: 120 TLVILKALRDTSRGNNLGMETPYYTPRKRTEGNPPLVEANTGKYYPTRDLILTDKFSEEV 179
+ +ILKA+ DTS L + +Y P+ + + TG RD
Sbjct: 148 SFLILKAIEDTS---TLSSDLLHYKPKFHFKEK----KRKTGNTSHMRDK---------- 190
Query: 180 RRFMRWRAEVELANKNNIKRIKLGKVQNLEESYLGFEVRAYPVDHSIYGATAYIIEGDVS 239
+ + IK ++ K ++L E FE+ PVDHS+ G+ AY+IE + +
Sbjct: 191 ----------NIKIERPIKLLEPYKAEDLGE----FEITQAPVDHSVPGSCAYLIESEEA 236
Query: 240 VAYTGDFRLHGKNGNLTRKFIKAAKNAS--ILITEGTRVSRKNDDFNVSEKEVYENALRI 297
+ YTGD R G+ +RKF+K A+ S ++ITEGTR+ + N F E+++ I
Sbjct: 237 IVYTGDIRFRGRRDQESRKFVKKARKFSPTVMITEGTRIDQDNSTF---EEDIERRTSDI 293
Query: 298 VEEAKGLVIADFSLRNFERLESFKRIAEKTGRELVITTKEAYYLHALKTAGEADHLREVK 357
+GLVI ++ +R+ +R +F R AE + R L ++ K+AY + + G LR++
Sbjct: 294 AVNHRGLVIINYPIRDLDRFLTFYRAAENSDRTLAVSLKQAYIIKLFEGLG-YPWLRDLA 352
Query: 358 IY----------ED-----------SKTKPEK--------WEKWILSKYNELKVTPEEIT 388
+Y ED + PE+ WE+ L N +T ++
Sbjct: 353 VYIPRRNWGLIAEDAFVCFDGEWIPAADLPEEYMEQDYRGWERAFLELDN--TITCRDLR 410
Query: 389 REQENYILCFSFYDMPKLLDIMPSGGVYIYSSSEAFTEEQVFSFLRLWNWLQYFGFEVHG 448
E E Y+ +++ + +DI P G YI S +E F EE R NWL++FG +
Sbjct: 411 EEPEEYLFQCDYFEFKEFIDIKPEGAAYIKSKTEPFNEEMEIDAERESNWLRHFGIYQY- 469
Query: 449 FKVDEHGRPIFEKGFHASGHISKDELVKVIEEVDPDYIVPVHTENPEWFREVWEDKAI 506
+ FH+SGH + +L+ +I +++P+ I P+HT N E F ++ED++I
Sbjct: 470 ------------RRFHSSGHAGRSDLLGMIRDIEPESIYPIHTRNREEFL-IFEDESI 514
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205652734
Number of Sequences: 2977
Number of extensions: 9226532
Number of successful extensions: 22521
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22500
Number of HSP's gapped (non-prelim): 6
length of query: 516
length of database: 189,106,746
effective HSP length: 56
effective length of query: 460
effective length of database: 155,591,474
effective search space: 71572078040
effective search space used: 71572078040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)