BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1037 (PAB1037) DE:SIMILAR TO E. COLI GLUCOSAMINE SYNTHETASE
         (208 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75004 hypothetical protein PAB1037 - Pyrococcus abyssi (st...   440  e-123
pir||B64489 hypothetical protein MJ1515 - Methanococcus jannasch...   139  2e-32
pir||A82104 conserved hypothetical protein VC2229 [imported] - V...   127  8e-29
sp|P44098|YAFJ_HAEIN HYPOTHETICAL PROTEIN HI1037 >gi|1074620|pir...   120  2e-26
sp|Q47147|YAFJ_ECOLI HYPOTHETICAL 28.6 KD PROTEIN IN GMHA-DINJ I...   116  2e-25
pir||H81038 conserved hypothetical protein NMB1815 [imported] - ...   114  8e-25
gb|AAF61909.1|AF216815_5 (AF216815) YafJ-like protein [Azospiril...   114  1e-24
pir||F81984 hypothetical protein NMA0646 [imported] - Neisseria ...   114  1e-24
emb|CAA05723.1| (AJ002783) YafJ [Neisseria gonorrhoeae]               113  2e-24
pir||G83481 conserved hypothetical protein PA1307 [imported] - P...   109  3e-23
pir||C69062 conserved hypothetical protein MTH1466 - Methanobact...    77  2e-13

>pir||D75004 hypothetical protein PAB1037 - Pyrococcus abyssi (strain Orsay)
           >gi|5458988|emb|CAB50474.1| (AJ248288) SIMILAR TO E.
           COLI GLUCOSAMINE SYNTHETASE [Pyrococcus abyssi]
           Length = 208
           
 Score =  440 bits (1120), Expect = e-123
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60
           MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS
Sbjct: 1   MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60

Query: 61  RIALMLPRLNIRSQIIMSHVRFATSGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVE 120
           RIALMLPRLNIRSQIIMSHVRFATSGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVE
Sbjct: 61  RIALMLPRLNIRSQIIMSHVRFATSGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVE 120

Query: 121 ELPKRFKPLGTTDSEAAFCYIMENLEGIRTIKELFTKLYQLLNEVSNYGTLNILMSNGRY 180
           ELPKRFKPLGTTDSEAAFCYIMENLEGIRTIKELFTKLYQLLNEVSNYGTLNILMSNGRY
Sbjct: 121 ELPKRFKPLGTTDSEAAFCYIMENLEGIRTIKELFTKLYQLLNEVSNYGTLNILMSNGRY 180

Query: 181 LFAYTHYPGKGMVLLKRHPPHRGSFKTP 208
           LFAYTHYPGKGMVLLKRHPPHRGSFKTP
Sbjct: 181 LFAYTHYPGKGMVLLKRHPPHRGSFKTP 208


>pir||B64489 hypothetical protein MJ1515 - Methanococcus jannaschii
           >gi|1592147|gb|AAB99533.1| (U67592) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 355
           
 Score =  139 bits (348), Expect = 2e-32
 Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 14/206 (6%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60
           MCEL G+  NK V+V  +   F  +SE +P+GWG+ +Y      +    +IK+PI    +
Sbjct: 1   MCELLGICFNKKVNVELSLNSFKHRSEDHPNGWGIAFY-----PDGFVRVIKEPIKMNEA 55

Query: 61  RIALMLPRLNIRSQIIMSHVRFATSGV-SYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGV 119
            +A  +    I+S I ++H+R A++G  SY+NTHPFVR++    +  E  FAHNG L G 
Sbjct: 56  LLAECVRWTKIKSNIFIAHIRKASAGSESYVNTHPFVRKL----EDKEIAFAHNGTLLGY 111

Query: 120 EELP-KRFKPLGTTDSEAAFCYIMENLEG--IRTIKELFTKLYQLLNEVSNYGTLNILMS 176
           E+L    + P+G TDSE  FCY++  +E   I   KE F ++  +L +++ YG  N L S
Sbjct: 112 EDLELDGYYPIGETDSEYVFCYLLSQIEKREIEWNKEGFDEMLDILLDINYYGAFNCLFS 171

Query: 177 NGRYLFAYTHYPG-KGMVLLKRHPPH 201
           +G YLFAY  Y G + +  LKR PP+
Sbjct: 172 DGEYLFAYKDYRGRRELHFLKRKPPY 197


>pir||A82104 conserved hypothetical protein VC2229 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9656787|gb|AAF95373.1|
           (AE004294) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 281
           
 Score =  127 bits (317), Expect = 8e-29
 Identities = 73/194 (37%), Positives = 113/194 (57%), Gaps = 19/194 (9%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKS-ELNPH--GWGVGWYLMTINGNRAASIIKQPIPT 57
           MCEL G++AN   D+ F++ G +++  +  PH  GWG+ +Y       +     K P P+
Sbjct: 1   MCELLGMSANVPTDICFSFTGLMQRGGKTGPHRDGWGIAFY-----EGKGFRTFKDPNPS 55

Query: 58  YRSRIALMLPRLNIRSQIIMSHVRFAT-SGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVL 116
            +S+IA ++ +  I+S+ ++SH+R A   GV+  NTHPF R +W  GQY  W FAHNG L
Sbjct: 56  SQSKIAELVQQYPIKSRAVISHIRQANRGGVNLENTHPFTRELW--GQY--WTFAHNGQL 111

Query: 117 DGVEELPK-RFKPLGTTDSEAAFCYIMENL-----EGIRTIKELFTKLYQLLNEVSNYGT 170
            G + L   R +P+G TDSE AFC+++  +     EG +   E+   + Q  +E+   G 
Sbjct: 112 TGYQNLVTGRHRPVGETDSELAFCWLLNQMEQCYPEGPQDWPEMLRYVAQCCDELRALGV 171

Query: 171 LNILMSNGRYLFAY 184
            N+L+SNG Y+ AY
Sbjct: 172 FNMLLSNGEYVMAY 185


>sp|P44098|YAFJ_HAEIN HYPOTHETICAL PROTEIN HI1037 >gi|1074620|pir||H64018 hypothetical
           protein HI1037 - Haemophilus influenzae (strain Rd KW20)
           >gi|1574070|gb|AAC22697.1| (U32784) conserved
           hypothetical protein [Haemophilus influenzae Rd]
           Length = 294
           
 Score =  120 bits (297), Expect = 2e-26
 Identities = 69/197 (35%), Positives = 114/197 (57%), Gaps = 26/197 (13%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSEL---NPHGWGVGWY----LMTINGNRAASIIKQ 53
           MC+L G+N N   D+ F++ GF R++ L   +  G+G+ ++    +     N+AAS+   
Sbjct: 17  MCQLLGMNCNTPTDIVFSFEGFRRRAGLTDCHSDGFGIAFFEGRGVRIFRDNQAASL--- 73

Query: 54  PIPTYRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAH 112
                 S IA  + + NI+S  +++H+R AT G V+  NTHPF+R IW       W+FAH
Sbjct: 74  ------SPIADCIKQYNIKSLNVIAHIRKATQGEVNIENTHPFIREIWG----QNWVFAH 123

Query: 113 NGVLDGVEELPKRF-KPLGTTDSEAAFCYIMENLEGIRTIK----ELFTKLYQLLNEVSN 167
           NG L  + ++   F +P+G+TDSEAAFCY+ E L+     K    E+F  + ++   ++ 
Sbjct: 124 NGNLKNLPDMTDHFLQPIGSTDSEAAFCYMAEYLKNTFRKKPSEMEIFEAIQKVTKGLAQ 183

Query: 168 YGTLNILMSNGRYLFAY 184
           +GT N ++SNG ++ A+
Sbjct: 184 HGTFNFILSNGEWMIAH 200


>sp|Q47147|YAFJ_ECOLI HYPOTHETICAL 28.6 KD PROTEIN IN GMHA-DINJ INTERGENIC REGION
           >gi|7429308|pir||H64746 yafJ protein - Escherichia coli
           >gi|984579|dbj|BAA07585.1| (D38582) YafJ [Escherichia
           coli] >gi|1552793|gb|AAB08645.1| (U70214) hypothetical
           [Escherichia coli] >gi|1786417|gb|AAC73327.1| (AE000131)
           putative amidotransferase [Escherichia coli K12]
           >gi|4902959|dbj|BAA77893.1| (D83536) Hypothetical
           protein HI1037 [Escherichia coli]
           Length = 255
           
 Score =  116 bits (288), Expect = 2e-25
 Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 19/194 (9%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSE-LNPH--GWGVGWYLMTINGNRAASIIKQPIPT 57
           MCEL G++AN   D+ F++ G V++     PH  GWG+ +Y       +     K P P+
Sbjct: 1   MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFY-----EGKGCRTFKDPQPS 55

Query: 58  YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNGVL 116
           + S IA ++    I+S  +++H+R A  G V+  NTHPF R +W       W +AHNG L
Sbjct: 56  FNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWG----RNWTYAHNGQL 111

Query: 117 DGVEELPK-RFKPLGTTDSEAAFCYIMENL-----EGIRTIKELFTKLYQLLNEVSNYGT 170
            G + L    F+P+G TDSE AFC+++  L          +  +F  +  L +E+   G 
Sbjct: 112 TGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGV 171

Query: 171 LNILMSNGRYLFAY 184
            N+L+S+GRY+ AY
Sbjct: 172 FNMLLSDGRYVMAY 185


>pir||H81038 conserved hypothetical protein NMB1815 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7227068|gb|AAF42150.1| (AE002531) conserved
           hypothetical protein [Neisseria meningitidis MC58]
           Length = 280
           
 Score =  114 bits (283), Expect = 8e-25
 Identities = 66/193 (34%), Positives = 108/193 (55%), Gaps = 18/193 (9%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSELNPH---GWGVGWYLMTINGNRAASIIKQPIPT 57
           MC+L G+N N   D+ F++ GF R+  +  H   G+G+G++       +   +     P+
Sbjct: 1   MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFF-----EGKGVRLFHDDKPS 55

Query: 58  YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNG-V 115
             S +A ++    I+S+ +++H+R A+ G  S  NTHPF+R +W  G Y  W+FAHNG +
Sbjct: 56  VNSPVADLVRAYQIKSENVIAHIRKASQGQTSLANTHPFMREMW--GGY--WLFAHNGHL 111

Query: 116 LDGVEELPKRFKPLGTTDSEAAFCYIMENLEGIRTIK----ELFTKLYQLLNEVSNYGTL 171
           +D   E  + F P+GTTDSE AFC+I+  L      +     LF  +  L +E+  +G  
Sbjct: 112 IDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAGLTHEIRKFGLF 171

Query: 172 NILMSNGRYLFAY 184
           N ++S+G  LFA+
Sbjct: 172 NFMLSDGIALFAH 184


>gb|AAF61909.1|AF216815_5 (AF216815) YafJ-like protein [Azospirillum brasilense]
           Length = 249
           
 Score =  114 bits (282), Expect = 1e-24
 Identities = 65/188 (34%), Positives = 105/188 (55%), Gaps = 19/188 (10%)

Query: 7   VNANKDVDVNFTWRGFVRKS-ELNPH--GWGVGWYLMTINGNRAASIIKQPIPTYRSRIA 63
           ++AN   D+ F++RG +R+  +  PH  GWG+ +Y       +       P P+  S IA
Sbjct: 1   MSANVPTDICFSFRGLMRRGGQTGPHRDGWGIAFY-----EGKGCRTFHDPAPSCESEIA 55

Query: 64  LMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVEEL 122
            ++   +I+S +++SH+R A  G VS  NTHPF R +W       W FAHNG L G++E 
Sbjct: 56  RLVSSYSIKSCVVISHIRRANRGRVSLENTHPFTRELWG----RVWTFAHNGQLKGIKER 111

Query: 123 PKRF-KPLGTTDSEAAFCYIMENL-----EGIRTIKELFTKLYQLLNEVSNYGTLNILMS 176
              F +P+GTTDSE AFC++++ +     E  ++   L   +  L  ++   G  N+L+S
Sbjct: 112 TLTFYEPVGTTDSEHAFCWLLDQIRMQYPEPPKSSGALMRLIRDLATDLGTLGVFNMLLS 171

Query: 177 NGRYLFAY 184
           +GRYL+ +
Sbjct: 172 DGRYLWCH 179


>pir||F81984 hypothetical protein NMA0646 [imported] - Neisseria meningitidis
           (group A strain Z2491) >gi|7379377|emb|CAB83935.1|
           (AL162753) hypothetical protein NMA0646 [Neisseria
           meningitidis Z2491]
           Length = 280
           
 Score =  114 bits (282), Expect = 1e-24
 Identities = 66/193 (34%), Positives = 108/193 (55%), Gaps = 18/193 (9%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSELNPH---GWGVGWYLMTINGNRAASIIKQPIPT 57
           MC+L G+N N   D+ F++ GF R+  +  H   G+G+G++       +   +     P+
Sbjct: 1   MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFF-----EGKGVRLFHDDKPS 55

Query: 58  YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNG-V 115
             S +A ++    I+S+ +++H+R A+ G  S  NTHPF+R +W  G Y  W+FAHNG +
Sbjct: 56  ANSPVADLVRAYQIKSENVVAHIRKASQGQTSLANTHPFMREMW--GGY--WLFAHNGHL 111

Query: 116 LDGVEELPKRFKPLGTTDSEAAFCYIMENLEGIRTIK----ELFTKLYQLLNEVSNYGTL 171
           +D   E  + F P+GTTDSE AFC+I+  L      +     LF  +  L +E+  +G  
Sbjct: 112 IDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAGLTHEIRKFGLF 171

Query: 172 NILMSNGRYLFAY 184
           N ++S+G  LFA+
Sbjct: 172 NFMLSDGIALFAH 184


>emb|CAA05723.1| (AJ002783) YafJ [Neisseria gonorrhoeae]
           Length = 280
           
 Score =  113 bits (279), Expect = 2e-24
 Identities = 67/193 (34%), Positives = 109/193 (55%), Gaps = 18/193 (9%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSELNPH---GWGVGWYLMTINGNRAASIIKQPIPT 57
           MC+L G+N N   D+ F++ GF R+  +  H   G+G+G++       +   +     P+
Sbjct: 1   MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFF-----EGKGVRLFHDDKPS 55

Query: 58  YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNG-V 115
             S +A ++    I+S+ +++H+R A+ G  S  NTHPF+R +W  G Y  W+FAHNG +
Sbjct: 56  ANSPVADLVRAYQIKSENVVAHIRKASQGQTSLANTHPFMREMW--GGY--WLFAHNGHL 111

Query: 116 LDGVEELPKRFKPLGTTDSEAAFCYIMENLEG--IRTIKE--LFTKLYQLLNEVSNYGTL 171
           +D   E  + F P+GTTDSE AFC+I+  L     R  +   LF  +  L +E+  +G  
Sbjct: 112 VDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFARPSRHDTLFDAIAGLTHEIRKFGLF 171

Query: 172 NILMSNGRYLFAY 184
           N ++S+G  LFA+
Sbjct: 172 NFMLSDGISLFAH 184


>pir||G83481 conserved hypothetical protein PA1307 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9947244|gb|AAG04696.1|AE004560_4 (AE004560)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 257
           
 Score =  109 bits (270), Expect = 3e-23
 Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 17/192 (8%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSE-LNPH--GWGVGWYLMTINGNRAASIIKQPIPT 57
           MCEL G++AN   D+ F++ G +++     PH  GWG+ +Y       R   + + P+ +
Sbjct: 1   MCELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFY-----EGRGVRLFQDPLAS 55

Query: 58  YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNGVL 116
             S +A ++ R  I+S+ ++ H+R A  G V   NTHPF+R +   G+Y  W FAHNG L
Sbjct: 56  VDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELG--GRY--WTFAHNGQL 111

Query: 117 DGVEELPKRFKPLGTTDSEAAFCYIMENLEGI----RTIKELFTKLYQLLNEVSNYGTLN 172
              +  P  ++P+G TDSEAAFC ++  +         ++ L   L    +E    G  N
Sbjct: 112 ADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFN 171

Query: 173 ILMSNGRYLFAY 184
            L+S+G +LF +
Sbjct: 172 ALISDGDWLFTF 183


>pir||C69062 conserved hypothetical protein MTH1466 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|726052|gb|AAA87414.1| (U19362) unknown
           [Methanobacterium thermoautotrophicum]
           >gi|2622581|gb|AAB85941.1| (AE000908) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 128
           
 Score = 76.9 bits (186), Expect = 2e-13
 Identities = 40/96 (41%), Positives = 64/96 (66%), Gaps = 7/96 (7%)

Query: 1   MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60
           +CEL G+  N++V  +F+ RGF  +SE NPHGWG+ +Y      +++  + K+P+ + +S
Sbjct: 21  LCELLGMCFNQEVQPSFSLRGFRMRSERNPHGWGLAFY-----PDKSVQVYKEPVKSRKS 75

Query: 61  RIALMLPRLN-IRSQIIMSHVRFATSG-VSYLNTHP 94
            +A ++   N IRS IIMSHVR  +SG +S+ +THP
Sbjct: 76  IMAEIMEGYNLIRSSIIMSHVRTKSSGEISHKDTHP 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.140    0.445 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81119917
Number of Sequences: 2977
Number of extensions: 3178093
Number of successful extensions: 6591
Number of sequences better than 1.0e-10: 11
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6549
Number of HSP's gapped (non-prelim): 12
length of query: 208
length of database: 189,106,746
effective HSP length: 49
effective length of query: 159
effective length of database: 159,780,883
effective search space: 25405160397
effective search space used: 25405160397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 163 (67.9 bits)