BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1037 (PAB1037) DE:SIMILAR TO E. COLI GLUCOSAMINE SYNTHETASE
(208 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75004 hypothetical protein PAB1037 - Pyrococcus abyssi (st... 440 e-123
pir||B64489 hypothetical protein MJ1515 - Methanococcus jannasch... 139 2e-32
pir||A82104 conserved hypothetical protein VC2229 [imported] - V... 127 8e-29
sp|P44098|YAFJ_HAEIN HYPOTHETICAL PROTEIN HI1037 >gi|1074620|pir... 120 2e-26
sp|Q47147|YAFJ_ECOLI HYPOTHETICAL 28.6 KD PROTEIN IN GMHA-DINJ I... 116 2e-25
pir||H81038 conserved hypothetical protein NMB1815 [imported] - ... 114 8e-25
gb|AAF61909.1|AF216815_5 (AF216815) YafJ-like protein [Azospiril... 114 1e-24
pir||F81984 hypothetical protein NMA0646 [imported] - Neisseria ... 114 1e-24
emb|CAA05723.1| (AJ002783) YafJ [Neisseria gonorrhoeae] 113 2e-24
pir||G83481 conserved hypothetical protein PA1307 [imported] - P... 109 3e-23
pir||C69062 conserved hypothetical protein MTH1466 - Methanobact... 77 2e-13
>pir||D75004 hypothetical protein PAB1037 - Pyrococcus abyssi (strain Orsay)
>gi|5458988|emb|CAB50474.1| (AJ248288) SIMILAR TO E.
COLI GLUCOSAMINE SYNTHETASE [Pyrococcus abyssi]
Length = 208
Score = 440 bits (1120), Expect = e-123
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60
MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS
Sbjct: 1 MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60
Query: 61 RIALMLPRLNIRSQIIMSHVRFATSGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVE 120
RIALMLPRLNIRSQIIMSHVRFATSGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVE
Sbjct: 61 RIALMLPRLNIRSQIIMSHVRFATSGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVE 120
Query: 121 ELPKRFKPLGTTDSEAAFCYIMENLEGIRTIKELFTKLYQLLNEVSNYGTLNILMSNGRY 180
ELPKRFKPLGTTDSEAAFCYIMENLEGIRTIKELFTKLYQLLNEVSNYGTLNILMSNGRY
Sbjct: 121 ELPKRFKPLGTTDSEAAFCYIMENLEGIRTIKELFTKLYQLLNEVSNYGTLNILMSNGRY 180
Query: 181 LFAYTHYPGKGMVLLKRHPPHRGSFKTP 208
LFAYTHYPGKGMVLLKRHPPHRGSFKTP
Sbjct: 181 LFAYTHYPGKGMVLLKRHPPHRGSFKTP 208
>pir||B64489 hypothetical protein MJ1515 - Methanococcus jannaschii
>gi|1592147|gb|AAB99533.1| (U67592) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 355
Score = 139 bits (348), Expect = 2e-32
Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 14/206 (6%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60
MCEL G+ NK V+V + F +SE +P+GWG+ +Y + +IK+PI +
Sbjct: 1 MCELLGICFNKKVNVELSLNSFKHRSEDHPNGWGIAFY-----PDGFVRVIKEPIKMNEA 55
Query: 61 RIALMLPRLNIRSQIIMSHVRFATSGV-SYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGV 119
+A + I+S I ++H+R A++G SY+NTHPFVR++ + E FAHNG L G
Sbjct: 56 LLAECVRWTKIKSNIFIAHIRKASAGSESYVNTHPFVRKL----EDKEIAFAHNGTLLGY 111
Query: 120 EELP-KRFKPLGTTDSEAAFCYIMENLEG--IRTIKELFTKLYQLLNEVSNYGTLNILMS 176
E+L + P+G TDSE FCY++ +E I KE F ++ +L +++ YG N L S
Sbjct: 112 EDLELDGYYPIGETDSEYVFCYLLSQIEKREIEWNKEGFDEMLDILLDINYYGAFNCLFS 171
Query: 177 NGRYLFAYTHYPG-KGMVLLKRHPPH 201
+G YLFAY Y G + + LKR PP+
Sbjct: 172 DGEYLFAYKDYRGRRELHFLKRKPPY 197
>pir||A82104 conserved hypothetical protein VC2229 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656787|gb|AAF95373.1|
(AE004294) conserved hypothetical protein [Vibrio
cholerae]
Length = 281
Score = 127 bits (317), Expect = 8e-29
Identities = 73/194 (37%), Positives = 113/194 (57%), Gaps = 19/194 (9%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKS-ELNPH--GWGVGWYLMTINGNRAASIIKQPIPT 57
MCEL G++AN D+ F++ G +++ + PH GWG+ +Y + K P P+
Sbjct: 1 MCELLGMSANVPTDICFSFTGLMQRGGKTGPHRDGWGIAFY-----EGKGFRTFKDPNPS 55
Query: 58 YRSRIALMLPRLNIRSQIIMSHVRFAT-SGVSYLNTHPFVRRIWSVGQYDEWIFAHNGVL 116
+S+IA ++ + I+S+ ++SH+R A GV+ NTHPF R +W GQY W FAHNG L
Sbjct: 56 SQSKIAELVQQYPIKSRAVISHIRQANRGGVNLENTHPFTRELW--GQY--WTFAHNGQL 111
Query: 117 DGVEELPK-RFKPLGTTDSEAAFCYIMENL-----EGIRTIKELFTKLYQLLNEVSNYGT 170
G + L R +P+G TDSE AFC+++ + EG + E+ + Q +E+ G
Sbjct: 112 TGYQNLVTGRHRPVGETDSELAFCWLLNQMEQCYPEGPQDWPEMLRYVAQCCDELRALGV 171
Query: 171 LNILMSNGRYLFAY 184
N+L+SNG Y+ AY
Sbjct: 172 FNMLLSNGEYVMAY 185
>sp|P44098|YAFJ_HAEIN HYPOTHETICAL PROTEIN HI1037 >gi|1074620|pir||H64018 hypothetical
protein HI1037 - Haemophilus influenzae (strain Rd KW20)
>gi|1574070|gb|AAC22697.1| (U32784) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 294
Score = 120 bits (297), Expect = 2e-26
Identities = 69/197 (35%), Positives = 114/197 (57%), Gaps = 26/197 (13%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSEL---NPHGWGVGWY----LMTINGNRAASIIKQ 53
MC+L G+N N D+ F++ GF R++ L + G+G+ ++ + N+AAS+
Sbjct: 17 MCQLLGMNCNTPTDIVFSFEGFRRRAGLTDCHSDGFGIAFFEGRGVRIFRDNQAASL--- 73
Query: 54 PIPTYRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAH 112
S IA + + NI+S +++H+R AT G V+ NTHPF+R IW W+FAH
Sbjct: 74 ------SPIADCIKQYNIKSLNVIAHIRKATQGEVNIENTHPFIREIWG----QNWVFAH 123
Query: 113 NGVLDGVEELPKRF-KPLGTTDSEAAFCYIMENLEGIRTIK----ELFTKLYQLLNEVSN 167
NG L + ++ F +P+G+TDSEAAFCY+ E L+ K E+F + ++ ++
Sbjct: 124 NGNLKNLPDMTDHFLQPIGSTDSEAAFCYMAEYLKNTFRKKPSEMEIFEAIQKVTKGLAQ 183
Query: 168 YGTLNILMSNGRYLFAY 184
+GT N ++SNG ++ A+
Sbjct: 184 HGTFNFILSNGEWMIAH 200
>sp|Q47147|YAFJ_ECOLI HYPOTHETICAL 28.6 KD PROTEIN IN GMHA-DINJ INTERGENIC REGION
>gi|7429308|pir||H64746 yafJ protein - Escherichia coli
>gi|984579|dbj|BAA07585.1| (D38582) YafJ [Escherichia
coli] >gi|1552793|gb|AAB08645.1| (U70214) hypothetical
[Escherichia coli] >gi|1786417|gb|AAC73327.1| (AE000131)
putative amidotransferase [Escherichia coli K12]
>gi|4902959|dbj|BAA77893.1| (D83536) Hypothetical
protein HI1037 [Escherichia coli]
Length = 255
Score = 116 bits (288), Expect = 2e-25
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 19/194 (9%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSE-LNPH--GWGVGWYLMTINGNRAASIIKQPIPT 57
MCEL G++AN D+ F++ G V++ PH GWG+ +Y + K P P+
Sbjct: 1 MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFY-----EGKGCRTFKDPQPS 55
Query: 58 YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNGVL 116
+ S IA ++ I+S +++H+R A G V+ NTHPF R +W W +AHNG L
Sbjct: 56 FNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWG----RNWTYAHNGQL 111
Query: 117 DGVEELPK-RFKPLGTTDSEAAFCYIMENL-----EGIRTIKELFTKLYQLLNEVSNYGT 170
G + L F+P+G TDSE AFC+++ L + +F + L +E+ G
Sbjct: 112 TGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGV 171
Query: 171 LNILMSNGRYLFAY 184
N+L+S+GRY+ AY
Sbjct: 172 FNMLLSDGRYVMAY 185
>pir||H81038 conserved hypothetical protein NMB1815 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227068|gb|AAF42150.1| (AE002531) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 280
Score = 114 bits (283), Expect = 8e-25
Identities = 66/193 (34%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSELNPH---GWGVGWYLMTINGNRAASIIKQPIPT 57
MC+L G+N N D+ F++ GF R+ + H G+G+G++ + + P+
Sbjct: 1 MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFF-----EGKGVRLFHDDKPS 55
Query: 58 YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNG-V 115
S +A ++ I+S+ +++H+R A+ G S NTHPF+R +W G Y W+FAHNG +
Sbjct: 56 VNSPVADLVRAYQIKSENVIAHIRKASQGQTSLANTHPFMREMW--GGY--WLFAHNGHL 111
Query: 116 LDGVEELPKRFKPLGTTDSEAAFCYIMENLEGIRTIK----ELFTKLYQLLNEVSNYGTL 171
+D E + F P+GTTDSE AFC+I+ L + LF + L +E+ +G
Sbjct: 112 IDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAGLTHEIRKFGLF 171
Query: 172 NILMSNGRYLFAY 184
N ++S+G LFA+
Sbjct: 172 NFMLSDGIALFAH 184
>gb|AAF61909.1|AF216815_5 (AF216815) YafJ-like protein [Azospirillum brasilense]
Length = 249
Score = 114 bits (282), Expect = 1e-24
Identities = 65/188 (34%), Positives = 105/188 (55%), Gaps = 19/188 (10%)
Query: 7 VNANKDVDVNFTWRGFVRKS-ELNPH--GWGVGWYLMTINGNRAASIIKQPIPTYRSRIA 63
++AN D+ F++RG +R+ + PH GWG+ +Y + P P+ S IA
Sbjct: 1 MSANVPTDICFSFRGLMRRGGQTGPHRDGWGIAFY-----EGKGCRTFHDPAPSCESEIA 55
Query: 64 LMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNGVLDGVEEL 122
++ +I+S +++SH+R A G VS NTHPF R +W W FAHNG L G++E
Sbjct: 56 RLVSSYSIKSCVVISHIRRANRGRVSLENTHPFTRELWG----RVWTFAHNGQLKGIKER 111
Query: 123 PKRF-KPLGTTDSEAAFCYIMENL-----EGIRTIKELFTKLYQLLNEVSNYGTLNILMS 176
F +P+GTTDSE AFC++++ + E ++ L + L ++ G N+L+S
Sbjct: 112 TLTFYEPVGTTDSEHAFCWLLDQIRMQYPEPPKSSGALMRLIRDLATDLGTLGVFNMLLS 171
Query: 177 NGRYLFAY 184
+GRYL+ +
Sbjct: 172 DGRYLWCH 179
>pir||F81984 hypothetical protein NMA0646 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379377|emb|CAB83935.1|
(AL162753) hypothetical protein NMA0646 [Neisseria
meningitidis Z2491]
Length = 280
Score = 114 bits (282), Expect = 1e-24
Identities = 66/193 (34%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSELNPH---GWGVGWYLMTINGNRAASIIKQPIPT 57
MC+L G+N N D+ F++ GF R+ + H G+G+G++ + + P+
Sbjct: 1 MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFF-----EGKGVRLFHDDKPS 55
Query: 58 YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNG-V 115
S +A ++ I+S+ +++H+R A+ G S NTHPF+R +W G Y W+FAHNG +
Sbjct: 56 ANSPVADLVRAYQIKSENVVAHIRKASQGQTSLANTHPFMREMW--GGY--WLFAHNGHL 111
Query: 116 LDGVEELPKRFKPLGTTDSEAAFCYIMENLEGIRTIK----ELFTKLYQLLNEVSNYGTL 171
+D E + F P+GTTDSE AFC+I+ L + LF + L +E+ +G
Sbjct: 112 IDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAGLTHEIRKFGLF 171
Query: 172 NILMSNGRYLFAY 184
N ++S+G LFA+
Sbjct: 172 NFMLSDGIALFAH 184
>emb|CAA05723.1| (AJ002783) YafJ [Neisseria gonorrhoeae]
Length = 280
Score = 113 bits (279), Expect = 2e-24
Identities = 67/193 (34%), Positives = 109/193 (55%), Gaps = 18/193 (9%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSELNPH---GWGVGWYLMTINGNRAASIIKQPIPT 57
MC+L G+N N D+ F++ GF R+ + H G+G+G++ + + P+
Sbjct: 1 MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFF-----EGKGVRLFHDDKPS 55
Query: 58 YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNG-V 115
S +A ++ I+S+ +++H+R A+ G S NTHPF+R +W G Y W+FAHNG +
Sbjct: 56 ANSPVADLVRAYQIKSENVVAHIRKASQGQTSLANTHPFMREMW--GGY--WLFAHNGHL 111
Query: 116 LDGVEELPKRFKPLGTTDSEAAFCYIMENLEG--IRTIKE--LFTKLYQLLNEVSNYGTL 171
+D E + F P+GTTDSE AFC+I+ L R + LF + L +E+ +G
Sbjct: 112 VDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFARPSRHDTLFDAIAGLTHEIRKFGLF 171
Query: 172 NILMSNGRYLFAY 184
N ++S+G LFA+
Sbjct: 172 NFMLSDGISLFAH 184
>pir||G83481 conserved hypothetical protein PA1307 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947244|gb|AAG04696.1|AE004560_4 (AE004560)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 257
Score = 109 bits (270), Expect = 3e-23
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSE-LNPH--GWGVGWYLMTINGNRAASIIKQPIPT 57
MCEL G++AN D+ F++ G +++ PH GWG+ +Y R + + P+ +
Sbjct: 1 MCELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFY-----EGRGVRLFQDPLAS 55
Query: 58 YRSRIALMLPRLNIRSQIIMSHVRFATSG-VSYLNTHPFVRRIWSVGQYDEWIFAHNGVL 116
S +A ++ R I+S+ ++ H+R A G V NTHPF+R + G+Y W FAHNG L
Sbjct: 56 VDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELG--GRY--WTFAHNGQL 111
Query: 117 DGVEELPKRFKPLGTTDSEAAFCYIMENLEGI----RTIKELFTKLYQLLNEVSNYGTLN 172
+ P ++P+G TDSEAAFC ++ + ++ L L +E G N
Sbjct: 112 ADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFN 171
Query: 173 ILMSNGRYLFAY 184
L+S+G +LF +
Sbjct: 172 ALISDGDWLFTF 183
>pir||C69062 conserved hypothetical protein MTH1466 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|726052|gb|AAA87414.1| (U19362) unknown
[Methanobacterium thermoautotrophicum]
>gi|2622581|gb|AAB85941.1| (AE000908) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 128
Score = 76.9 bits (186), Expect = 2e-13
Identities = 40/96 (41%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
Query: 1 MCELFGVNANKDVDVNFTWRGFVRKSELNPHGWGVGWYLMTINGNRAASIIKQPIPTYRS 60
+CEL G+ N++V +F+ RGF +SE NPHGWG+ +Y +++ + K+P+ + +S
Sbjct: 21 LCELLGMCFNQEVQPSFSLRGFRMRSERNPHGWGLAFY-----PDKSVQVYKEPVKSRKS 75
Query: 61 RIALMLPRLN-IRSQIIMSHVRFATSG-VSYLNTHP 94
+A ++ N IRS IIMSHVR +SG +S+ +THP
Sbjct: 76 IMAEIMEGYNLIRSSIIMSHVRTKSSGEISHKDTHP 111
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.140 0.445
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81119917
Number of Sequences: 2977
Number of extensions: 3178093
Number of successful extensions: 6591
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6549
Number of HSP's gapped (non-prelim): 12
length of query: 208
length of database: 189,106,746
effective HSP length: 49
effective length of query: 159
effective length of database: 159,780,883
effective search space: 25405160397
effective search space used: 25405160397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 163 (67.9 bits)