BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1039 (PAB1039) DE:Hypothetical protein
(532 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75005 hypothetical protein PAB1039 - Pyrococcus abyssi (st... 1075 0.0
pir||G71157 hypothetical protein PH0462 - Pyrococcus horikoshii ... 709 0.0
>pir||B75005 hypothetical protein PAB1039 - Pyrococcus abyssi (strain Orsay)
>gi|5458994|emb|CAB50480.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 532
Score = 1075 bits (2750), Expect = 0.0
Identities = 532/532 (100%), Positives = 532/532 (100%)
Query: 1 MKYLKIIVVILATLMLGCLIKPPANVKFDVDKTTIPPGGIFHVIATINNTGKVGITNVKL 60
MKYLKIIVVILATLMLGCLIKPPANVKFDVDKTTIPPGGIFHVIATINNTGKVGITNVKL
Sbjct: 1 MKYLKIIVVILATLMLGCLIKPPANVKFDVDKTTIPPGGIFHVIATINNTGKVGITNVKL 60
Query: 61 NVEGGEFLIIQNPKIENPIKVGESEKLIWTIKGPKTPGTYQFKAYLDIVDELKRVWRGIT 120
NVEGGEFLIIQNPKIENPIKVGESEKLIWTIKGPKTPGTYQFKAYLDIVDELKRVWRGIT
Sbjct: 61 NVEGGEFLIIQNPKIENPIKVGESEKLIWTIKGPKTPGTYQFKAYLDIVDELKRVWRGIT 120
Query: 121 FEVQIKVTPGIREVSGVSASIKAPSEIQGGRNFNITIELLNNYSVPIRINSVDLTSGALS 180
FEVQIKVTPGIREVSGVSASIKAPSEIQGGRNFNITIELLNNYSVPIRINSVDLTSGALS
Sbjct: 121 FEVQIKVTPGIREVSGVSASIKAPSEIQGGRNFNITIELLNNYSVPIRINSVDLTSGALS 180
Query: 181 IVKKYIPDRIDGKSKGDIIVTLRAPPAYRVQRIYVIVEYSGPGISGRVIKEREITIVWKP 240
IVKKYIPDRIDGKSKGDIIVTLRAPPAYRVQRIYVIVEYSGPGISGRVIKEREITIVWKP
Sbjct: 181 IVKKYIPDRIDGKSKGDIIVTLRAPPAYRVQRIYVIVEYSGPGISGRVIKEREITIVWKP 240
Query: 241 WDFSLDSIERIYGNLTEWIEYNKIVDGYWEWVFNSDSEIKNRTLFRRDVAQIISISNSDL 300
WDFSLDSIERIYGNLTEWIEYNKIVDGYWEWVFNSDSEIKNRTLFRRDVAQIISISNSDL
Sbjct: 241 WDFSLDSIERIYGNLTEWIEYNKIVDGYWEWVFNSDSEIKNRTLFRRDVAQIISISNSDL 300
Query: 301 EAAKGVYNYIITNYVLEKRKTGTLDPQEIRKRSSVTPIEADILMVAYLRSLNIPARIVSI 360
EAAKGVYNYIITNYVLEKRKTGTLDPQEIRKRSSVTPIEADILMVAYLRSLNIPARIVSI
Sbjct: 301 EAAKGVYNYIITNYVLEKRKTGTLDPQEIRKRSSVTPIEADILMVAYLRSLNIPARIVSI 360
Query: 361 YSPPDCTHYPFVEAYLSGKWYVIDFSHMFFGTREEFIASRWYPRIYQQVTVFKSSLVALK 420
YSPPDCTHYPFVEAYLSGKWYVIDFSHMFFGTREEFIASRWYPRIYQQVTVFKSSLVALK
Sbjct: 361 YSPPDCTHYPFVEAYLSGKWYVIDFSHMFFGTREEFIASRWYPRIYQQVTVFKSSLVALK 420
Query: 421 PSLSGHDHEDISQEYINITEASLLDALSKKLDAETFLKVKTLIDGIDSKEEKIFAMFLFS 480
PSLSGHDHEDISQEYINITEASLLDALSKKLDAETFLKVKTLIDGIDSKEEKIFAMFLFS
Sbjct: 421 PSLSGHDHEDISQEYINITEASLLDALSKKLDAETFLKVKTLIDGIDSKEEKIFAMFLFS 480
Query: 481 SGDPREVRMLIDKAKMSSLRNTIDAFYEFYRDVPWEDDFRIYWEKLLSLYKG 532
SGDPREVRMLIDKAKMSSLRNTIDAFYEFYRDVPWEDDFRIYWEKLLSLYKG
Sbjct: 481 SGDPREVRMLIDKAKMSSLRNTIDAFYEFYRDVPWEDDFRIYWEKLLSLYKG 532
>pir||G71157 hypothetical protein PH0462 - Pyrococcus horikoshii
>gi|3256865|dbj|BAA29548.1| (AP000002) 530aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 530
Score = 709 bits (1810), Expect = 0.0
Identities = 322/531 (60%), Positives = 434/531 (81%), Gaps = 1/531 (0%)
Query: 1 MKYLKIIVVILATLMLGCLIKPPANVKFDVDKTTIPPGGIFHVIATINNTGKVGITNVKL 60
MK+LK+IVVILATL LGCLIK PA+VKF++D+TTIPP G+FH+I T+NNTGKVGI + KL
Sbjct: 1 MKHLKLIVVILATLALGCLIKSPASVKFEIDRTTIPPSGVFHLIVTLNNTGKVGIVDAKL 60
Query: 61 NVEGGEFLIIQNPKIENPIKVGESEKLIWTIKGPKTPGTYQFKAYLDIVDELKRVWRGIT 120
VEG EF I+Q+PK+E+PIKVG+S KLIWTIKGPK PG Y FKAYLDIVDEL RVWRGIT
Sbjct: 61 VVEGEEFFIVQSPKLEHPIKVGDSAKLIWTIKGPKIPGNYHFKAYLDIVDELNRVWRGIT 120
Query: 121 FEVQIKVTPGIREVSGVSASIKAPSEIQGGRNFNITIELLNNYSVPIRINSVDLTSGALS 180
+E IKV+ + S V+ ++ PS++QGG+ ++ E++NN +VP+ I S ++++ L
Sbjct: 121 YETTIKVSSEELKDS-VNLNLTVPSKVQGGKIIIVSGEIVNNLTVPVNIVSAEVSAEDLE 179
Query: 181 IVKKYIPDRIDGKSKGDIIVTLRAPPAYRVQRIYVIVEYSGPGISGRVIKEREITIVWKP 240
++ K +P++ID SKG ++ + PP Y R+YVI+EY+ +SG++I E++I IVWKP
Sbjct: 180 VIDKEVPNKIDANSKGKVVFKFKVPPRYEKVRMYVIIEYASLQVSGKLIGEKDILIVWKP 239
Query: 241 WDFSLDSIERIYGNLTEWIEYNKIVDGYWEWVFNSDSEIKNRTLFRRDVAQIISISNSDL 300
W+ S + ++ IYGNL+EWI YN IVDGYWEW++ S S+I+NRT+FR V ++S++NSD+
Sbjct: 240 WELSPEDVKDIYGNLSEWIFYNDIVDGYWEWMYGSKSKIENRTMFRESVEDLLSVANSDV 299
Query: 301 EAAKGVYNYIITNYVLEKRKTGTLDPQEIRKRSSVTPIEADILMVAYLRSLNIPARIVSI 360
EAAK VYN+I+TNYV+EKR+ TLDPQ+I + SS++P EA+ILMVAYLRSLNIPARIVS+
Sbjct: 300 EAAKAVYNHIVTNYVIEKRRIKTLDPQKIMESSSISPTEAEILMVAYLRSLNIPARIVSV 359
Query: 361 YSPPDCTHYPFVEAYLSGKWYVIDFSHMFFGTREEFIASRWYPRIYQQVTVFKSSLVALK 420
YS DCT+ PFVEAYLSGKWYVIDF+HMFFGTREEFIA+RWYP+IYQ++TVF SLVALK
Sbjct: 360 YSETDCTYSPFVEAYLSGKWYVIDFNHMFFGTREEFIATRWYPKIYQEITVFGKSLVALK 419
Query: 421 PSLSGHDHEDISQEYINITEASLLDALSKKLDAETFLKVKTLIDGIDSKEEKIFAMFLFS 480
PS SGH HED+++EY++ITE +L + LSK LD TF +V+ +++ +++++E+IFAMFLF+
Sbjct: 420 PSPSGHAHEDLTKEYLSITEKALFNHLSKSLDPSTFSQVRIMLNSMNNEDERIFAMFLFT 479
Query: 481 SGDPREVRMLIDKAKMSSLRNTIDAFYEFYRDVPWEDDFRIYWEKLLSLYK 531
S P E + L++K ++ L+ TIDAFY+FYRD+PWE+DFRIYWEKL++LY+
Sbjct: 480 SAKPEEAKQLLEKVHVNELKKTIDAFYKFYRDIPWEEDFRIYWEKLINLYR 530
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199754593
Number of Sequences: 2977
Number of extensions: 8484345
Number of successful extensions: 19695
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19692
Number of HSP's gapped (non-prelim): 2
length of query: 532
length of database: 189,106,746
effective HSP length: 56
effective length of query: 476
effective length of database: 155,591,474
effective search space: 74061541624
effective search space used: 74061541624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)