BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1040 (PAB1040) DE:Hypothetical protein
(198 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75005 hypothetical protein PAB1040 - Pyrococcus abyssi (st... 394 e-109
sp|O58214|Y461_PYRHO HYPOTHETICAL PROTEIN PH0461 >gi|7518658|pir... 323 1e-87
sp|Q58780|YD85_METJA HYPOTHETICAL PROTEIN MJ1385 >gi|2128825|pir... 212 3e-54
gi|11498357 conserved hypothetical protein [Archaeoglobus fulgid... 202 3e-51
sp|O27185|YB13_METTH HYPOTHETICAL PROTEIN MTH1113 >gi|7482085|pi... 184 5e-46
emb|CAC12060.1| (AL445066) conserved hypothetical protein [Therm... 183 2e-45
gb|AAG19230.1| (AE005019) Vng0755c [Halobacterium sp. NRC-1] 171 5e-42
sp|Q9YAD3|YK06_AERPE HYPOTHETICAL PROTEIN APE2006 >gi|7516880|pi... 166 2e-40
gb|AAK40606.1| Conserved hypothetical protein [Sulfolobus solfat... 143 1e-33
>pir||C75005 hypothetical protein PAB1040 - Pyrococcus abyssi (strain Orsay)
>gi|5458995|emb|CAB50481.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 198
Score = 394 bits (1001), Expect = e-109
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF
Sbjct: 1 MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
Query: 61 VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120
VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE
Sbjct: 61 VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120
Query: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK 180
LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK
Sbjct: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK 180
Query: 181 QAEASGEGASRKNGQLPS 198
QAEASGEGASRKNGQLPS
Sbjct: 181 QAEASGEGASRKNGQLPS 198
>sp|O58214|Y461_PYRHO HYPOTHETICAL PROTEIN PH0461 >gi|7518658|pir||F71157 hypothetical
protein PH0461 - Pyrococcus horikoshii
>gi|3256864|dbj|BAA29547.1| (AP000002) 206aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 206
Score = 323 bits (819), Expect = 1e-87
Identities = 158/193 (81%), Positives = 177/193 (90%), Gaps = 1/193 (0%)
Query: 1 MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
MIVVLRLGHRPERDKRVTTHVALTARAFGADGIII SEE D KVKESVEDVV+RWGGPFF
Sbjct: 4 MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIASEE-DEKVKESVEDVVKRWGGPFF 62
Query: 61 VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120
++F ++WRKVMKEF GVKVHLTMYG+H+DD+I+EL+EKL++G DFM+IVGAEKVPREVYE
Sbjct: 63 IEFNRNWRKVMKEFTGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYE 122
Query: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK 180
LADYNVAIGNQPHSEVAALAV LDRLLEGKGL+KEFKGAK+KI+PQARGK VVEVQ A+
Sbjct: 123 LADYNVAIGNQPHSEVAALAVLLDRLLEGKGLKKEFKGAKIKIVPQARGKKVVEVQGYAE 182
Query: 181 QAEASGEGASRKN 193
Q +A G+ KN
Sbjct: 183 QDKAEGKATPGKN 195
>sp|Q58780|YD85_METJA HYPOTHETICAL PROTEIN MJ1385 >gi|2128825|pir||H64472 hypothetical
protein MJ1385 - Methanococcus jannaschii
>gi|1592031|gb|AAB99395.1| (U67578) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 179
Score = 212 bits (534), Expect = 3e-54
Identities = 108/180 (60%), Positives = 141/180 (78%), Gaps = 5/180 (2%)
Query: 1 MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
++ VLRLGHR +RDKR++THVALTARA GAD II +E D V+ SV+ VVE WGG F
Sbjct: 2 VVEVLRLGHRGDRDKRISTHVALTARALGADKIIFTTE--DEHVENSVKKVVESWGGNFE 59
Query: 61 VKFEKSWRKVMKEFD--GVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREV 118
EK WRK ++EF G+ VHLTMYG +I++I+ E+RE R+ +D +VIVGAEKVP+EV
Sbjct: 60 FVVEKHWRKYIREFKKRGIVVHLTMYGANINEIMPEIREISRD-KDILVIVGAEKVPKEV 118
Query: 119 YELADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKD 178
YELADYNV++GNQPHSEVAALA+FLDRL EGK L ++F+ AK+KI+P GK+V+ +++
Sbjct: 119 YELADYNVSVGNQPHSEVAALAIFLDRLFEGKTLYRDFEDAKIKIVPSKDGKVVIREKQN 178
>gi|11498357 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7388425|sp|O29507|Y751_ARCFU HYPOTHETICAL PROTEIN
AF0751 >gi|7483051|pir||G69343 conserved hypothetical
protein AF0751 - Archaeoglobus fulgidus
>gi|2649861|gb|AAB90489.1| (AE001053) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 168
Score = 202 bits (508), Expect = 3e-51
Identities = 107/172 (62%), Positives = 130/172 (75%), Gaps = 8/172 (4%)
Query: 2 IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
+ VLRLGHRPERDKR++THVALTARAFGA GI +E D V ESV DVVERWGG FF+
Sbjct: 3 VYVLRLGHRPERDKRISTHVALTARAFGAKGIYFDTE--DKSVFESVRDVVERWGGDFFI 60
Query: 62 KFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYEL 121
K SW+K+++EFDG+KVHLTMYGI + ++E++ + +V+VGAEKVP EVYEL
Sbjct: 61 K-AVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADK----VLVVVGAEKVPPEVYEL 115
Query: 122 ADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVV 173
D N++IG QPHSEVAALAVFLDR+L GK F AK+K+IP RGK VV
Sbjct: 116 CDLNISIGTQPHSEVAALAVFLDRVL-GKVFDISFDDAKIKVIPSERGKRVV 166
>sp|O27185|YB13_METTH HYPOTHETICAL PROTEIN MTH1113 >gi|7482085|pir||B69015 conserved
hypothetical protein MTH1113 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622215|gb|AAB85602.1| (AE000881) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 199
Score = 184 bits (463), Expect = 5e-46
Identities = 91/177 (51%), Positives = 127/177 (71%), Gaps = 7/177 (3%)
Query: 2 IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
+ VLRLGHRP RD R+TTHV LTARAFGA +I+ EE D K+ E VEDVV RWGGPF V
Sbjct: 23 VKVLRLGHRPSRDARITTHVCLTARAFGASEVILSGEE-DPKLMEGVEDVVRRWGGPFSV 81
Query: 62 KFEKSWRKVM---KEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREV 118
+ ++W+ V+ K+ G +HLTMYG+ D++ + + G+D +++VG +VP +V
Sbjct: 82 VYRRNWQGVIDSWKKDGGEVIHLTMYGLPARDVVPGIMDN---GKDKLIVVGGARVPGKV 138
Query: 119 YELADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEV 175
Y LADYNV + NQPHSEV++LAVF+ LL+G +F+ A++++IPQARGKM+ E+
Sbjct: 139 YSLADYNVGVTNQPHSEVSSLAVFMHMLLDGAEFDLKFEDARIEVIPQARGKMLREI 195
>emb|CAC12060.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 339
Score = 183 bits (459), Expect = 2e-45
Identities = 91/172 (52%), Positives = 124/172 (71%), Gaps = 6/172 (3%)
Query: 1 MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
MI VLR+ HRP RDKR+TTHVALTARAFGA I++ +E D ++ ++ V+ +GG F
Sbjct: 1 MITVLRINHRPYRDKRITTHVALTARAFGASAILV--DERDETLENTIRGVISNFGGSFS 58
Query: 61 VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120
+K +W + K F G++VHLTMYG I+D+IDE+R G+D MV+VG+EKVP E YE
Sbjct: 59 IKTGCNWIQEFKHFQGIRVHLTMYGRRINDVIDEIRNS---GKDVMVLVGSEKVPIEAYE 115
Query: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMV 172
+ADYNV++ NQP SEV+ALA+FLDR +GK EF+G ++ + P RGK+V
Sbjct: 116 IADYNVSVTNQPISEVSALAIFLDRYFQGKEFEFEFRG-RINVQPAERGKIV 166
>gb|AAG19230.1| (AE005019) Vng0755c [Halobacterium sp. NRC-1]
Length = 208
Score = 171 bits (429), Expect = 5e-42
Identities = 89/188 (47%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 2 IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
+ VLR GHRP RD R+TTHV LTARA GAD ++ + E+V D+ R+GGPF V
Sbjct: 23 VAVLRYGHRPGRDDRMTTHVGLTARALGADRVLFPDNAT--QAAETVRDITGRFGGPFDV 80
Query: 62 KFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYEL 121
+ ++++ GV VHLTMYG + + DE+R RE +V+VG EKVP +VYE
Sbjct: 81 ERTTELNATIEDWPGVVVHLTMYGEQLQSVDDEIRTTHRE-EPVLVVVGGEKVPGDVYEA 139
Query: 122 ADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQK-DAK 180
AD+NV + NQPHSEVA LAVFLDRL +G+ L + ++ A+ ++IP+ GK VV+V+ D
Sbjct: 140 ADWNVGVTNQPHSEVAGLAVFLDRLFDGRELEQGYENAERRVIPEELGKHVVDVEDGDHA 199
Query: 181 QAEASGEG 188
+ A+G+G
Sbjct: 200 EGAAAGDG 207
>sp|Q9YAD3|YK06_AERPE HYPOTHETICAL PROTEIN APE2006 >gi|7516880|pir||H72503 hypothetical
protein APE2006 - Aeropyrum pernix (strain K1)
>gi|5105704|dbj|BAA81016.1| (AP000063) 187aa long
hypothetical protein [Aeropyrum pernix]
Length = 187
Score = 166 bits (416), Expect = 2e-40
Identities = 92/174 (52%), Positives = 117/174 (66%), Gaps = 7/174 (4%)
Query: 2 IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
+ VLRLGHRPERDKRVTTHVAL ARAFGA+G ++ D V ESV VV RWGGPF V
Sbjct: 14 VYVLRLGHRPERDKRVTTHVALVARAFGANGFVLEGV-CDEGVVESVRRVVARWGGPFTV 72
Query: 62 KFEKSWRKVMK---EFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREV 118
+ S R+ ++ E G VHLTMYG+++DD+ + R +V+VGAEKV R
Sbjct: 73 ECGVSGRRYVRMWREGGGEVVHLTMYGVNVDDVAPVIAASPRRK---LVVVGAEKVERFY 129
Query: 119 YELADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMV 172
YE AD+NV++G QPHSEVAALA+FLDRL G+ ++ G L+++ RGK V
Sbjct: 130 YEEADWNVSVGTQPHSEVAALALFLDRLFRGEWRFIDYSGGFLRVMESQRGKRV 183
>gb|AAK40606.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 160
Score = 143 bits (357), Expect = 1e-33
Identities = 82/162 (50%), Positives = 110/162 (67%), Gaps = 10/162 (6%)
Query: 17 VTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGP--FFVKFEKSWRKVM--- 71
+TTHV L ARAFGA G+ I E D K+ +S+ V++ WGG F VK ++ + ++
Sbjct: 1 MTTHVILVARAFGAKGVYI--EGKDEKMVKSILKVIDSWGGSSYFLVKEIENGKSIVNEW 58
Query: 72 KEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYELADYNVAIGNQ 131
KE G +HLTMYGI+I+D D EK++ ++IVGAEKV Y ADYN+AIGNQ
Sbjct: 59 KEKGGTIIHLTMYGININDFQDRF-EKIKY--PLLIIVGAEKVEGWYYHNADYNIAIGNQ 115
Query: 132 PHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVV 173
PHSEVAALA+FLDR+ +G+ L EF+ AK+KI+PQ GK V+
Sbjct: 116 PHSEVAALAIFLDRIYKGRELYMEFEDAKIKILPQKAGKKVI 157
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70603477
Number of Sequences: 2977
Number of extensions: 2844044
Number of successful extensions: 7617
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7587
Number of HSP's gapped (non-prelim): 9
length of query: 198
length of database: 189,106,746
effective HSP length: 56
effective length of query: 142
effective length of database: 155,591,474
effective search space: 22093989308
effective search space used: 22093989308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)