BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1040 (PAB1040) DE:Hypothetical protein
         (198 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75005 hypothetical protein PAB1040 - Pyrococcus abyssi (st...   394  e-109
sp|O58214|Y461_PYRHO HYPOTHETICAL PROTEIN PH0461 >gi|7518658|pir...   323  1e-87
sp|Q58780|YD85_METJA HYPOTHETICAL PROTEIN MJ1385 >gi|2128825|pir...   212  3e-54
gi|11498357 conserved hypothetical protein [Archaeoglobus fulgid...   202  3e-51
sp|O27185|YB13_METTH HYPOTHETICAL PROTEIN MTH1113 >gi|7482085|pi...   184  5e-46
emb|CAC12060.1| (AL445066) conserved hypothetical protein [Therm...   183  2e-45
gb|AAG19230.1| (AE005019) Vng0755c [Halobacterium sp. NRC-1]          171  5e-42
sp|Q9YAD3|YK06_AERPE HYPOTHETICAL PROTEIN APE2006 >gi|7516880|pi...   166  2e-40
gb|AAK40606.1| Conserved hypothetical protein [Sulfolobus solfat...   143  1e-33

>pir||C75005 hypothetical protein PAB1040 - Pyrococcus abyssi (strain Orsay)
           >gi|5458995|emb|CAB50481.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 198
           
 Score =  394 bits (1001), Expect = e-109
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
           MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF
Sbjct: 1   MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60

Query: 61  VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120
           VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE
Sbjct: 61  VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120

Query: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK 180
           LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK
Sbjct: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK 180

Query: 181 QAEASGEGASRKNGQLPS 198
           QAEASGEGASRKNGQLPS
Sbjct: 181 QAEASGEGASRKNGQLPS 198


>sp|O58214|Y461_PYRHO HYPOTHETICAL PROTEIN PH0461 >gi|7518658|pir||F71157 hypothetical
           protein PH0461 - Pyrococcus horikoshii
           >gi|3256864|dbj|BAA29547.1| (AP000002) 206aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 206
           
 Score =  323 bits (819), Expect = 1e-87
 Identities = 158/193 (81%), Positives = 177/193 (90%), Gaps = 1/193 (0%)

Query: 1   MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
           MIVVLRLGHRPERDKRVTTHVALTARAFGADGIII SEE D KVKESVEDVV+RWGGPFF
Sbjct: 4   MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIASEE-DEKVKESVEDVVKRWGGPFF 62

Query: 61  VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120
           ++F ++WRKVMKEF GVKVHLTMYG+H+DD+I+EL+EKL++G DFM+IVGAEKVPREVYE
Sbjct: 63  IEFNRNWRKVMKEFTGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYE 122

Query: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKDAK 180
           LADYNVAIGNQPHSEVAALAV LDRLLEGKGL+KEFKGAK+KI+PQARGK VVEVQ  A+
Sbjct: 123 LADYNVAIGNQPHSEVAALAVLLDRLLEGKGLKKEFKGAKIKIVPQARGKKVVEVQGYAE 182

Query: 181 QAEASGEGASRKN 193
           Q +A G+    KN
Sbjct: 183 QDKAEGKATPGKN 195


>sp|Q58780|YD85_METJA HYPOTHETICAL PROTEIN MJ1385 >gi|2128825|pir||H64472 hypothetical
           protein MJ1385 - Methanococcus jannaschii
           >gi|1592031|gb|AAB99395.1| (U67578) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 179
           
 Score =  212 bits (534), Expect = 3e-54
 Identities = 108/180 (60%), Positives = 141/180 (78%), Gaps = 5/180 (2%)

Query: 1   MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
           ++ VLRLGHR +RDKR++THVALTARA GAD II  +E  D  V+ SV+ VVE WGG F 
Sbjct: 2   VVEVLRLGHRGDRDKRISTHVALTARALGADKIIFTTE--DEHVENSVKKVVESWGGNFE 59

Query: 61  VKFEKSWRKVMKEFD--GVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREV 118
              EK WRK ++EF   G+ VHLTMYG +I++I+ E+RE  R+ +D +VIVGAEKVP+EV
Sbjct: 60  FVVEKHWRKYIREFKKRGIVVHLTMYGANINEIMPEIREISRD-KDILVIVGAEKVPKEV 118

Query: 119 YELADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQKD 178
           YELADYNV++GNQPHSEVAALA+FLDRL EGK L ++F+ AK+KI+P   GK+V+  +++
Sbjct: 119 YELADYNVSVGNQPHSEVAALAIFLDRLFEGKTLYRDFEDAKIKIVPSKDGKVVIREKQN 178


>gi|11498357 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7388425|sp|O29507|Y751_ARCFU HYPOTHETICAL PROTEIN
           AF0751 >gi|7483051|pir||G69343 conserved hypothetical
           protein AF0751 - Archaeoglobus fulgidus
           >gi|2649861|gb|AAB90489.1| (AE001053) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 168
           
 Score =  202 bits (508), Expect = 3e-51
 Identities = 107/172 (62%), Positives = 130/172 (75%), Gaps = 8/172 (4%)

Query: 2   IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
           + VLRLGHRPERDKR++THVALTARAFGA GI   +E  D  V ESV DVVERWGG FF+
Sbjct: 3   VYVLRLGHRPERDKRISTHVALTARAFGAKGIYFDTE--DKSVFESVRDVVERWGGDFFI 60

Query: 62  KFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYEL 121
           K   SW+K+++EFDG+KVHLTMYGI +   ++E++   +     +V+VGAEKVP EVYEL
Sbjct: 61  K-AVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADK----VLVVVGAEKVPPEVYEL 115

Query: 122 ADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVV 173
            D N++IG QPHSEVAALAVFLDR+L GK     F  AK+K+IP  RGK VV
Sbjct: 116 CDLNISIGTQPHSEVAALAVFLDRVL-GKVFDISFDDAKIKVIPSERGKRVV 166


>sp|O27185|YB13_METTH HYPOTHETICAL PROTEIN MTH1113 >gi|7482085|pir||B69015 conserved
           hypothetical protein MTH1113 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622215|gb|AAB85602.1| (AE000881) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 199
           
 Score =  184 bits (463), Expect = 5e-46
 Identities = 91/177 (51%), Positives = 127/177 (71%), Gaps = 7/177 (3%)

Query: 2   IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
           + VLRLGHRP RD R+TTHV LTARAFGA  +I+  EE D K+ E VEDVV RWGGPF V
Sbjct: 23  VKVLRLGHRPSRDARITTHVCLTARAFGASEVILSGEE-DPKLMEGVEDVVRRWGGPFSV 81

Query: 62  KFEKSWRKVM---KEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREV 118
            + ++W+ V+   K+  G  +HLTMYG+   D++  + +    G+D +++VG  +VP +V
Sbjct: 82  VYRRNWQGVIDSWKKDGGEVIHLTMYGLPARDVVPGIMDN---GKDKLIVVGGARVPGKV 138

Query: 119 YELADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEV 175
           Y LADYNV + NQPHSEV++LAVF+  LL+G     +F+ A++++IPQARGKM+ E+
Sbjct: 139 YSLADYNVGVTNQPHSEVSSLAVFMHMLLDGAEFDLKFEDARIEVIPQARGKMLREI 195


>emb|CAC12060.1| (AL445066) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 339
           
 Score =  183 bits (459), Expect = 2e-45
 Identities = 91/172 (52%), Positives = 124/172 (71%), Gaps = 6/172 (3%)

Query: 1   MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFF 60
           MI VLR+ HRP RDKR+TTHVALTARAFGA  I++  +E D  ++ ++  V+  +GG F 
Sbjct: 1   MITVLRINHRPYRDKRITTHVALTARAFGASAILV--DERDETLENTIRGVISNFGGSFS 58

Query: 61  VKFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYE 120
           +K   +W +  K F G++VHLTMYG  I+D+IDE+R     G+D MV+VG+EKVP E YE
Sbjct: 59  IKTGCNWIQEFKHFQGIRVHLTMYGRRINDVIDEIRNS---GKDVMVLVGSEKVPIEAYE 115

Query: 121 LADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMV 172
           +ADYNV++ NQP SEV+ALA+FLDR  +GK    EF+G ++ + P  RGK+V
Sbjct: 116 IADYNVSVTNQPISEVSALAIFLDRYFQGKEFEFEFRG-RINVQPAERGKIV 166


>gb|AAG19230.1| (AE005019) Vng0755c [Halobacterium sp. NRC-1]
           Length = 208
           
 Score =  171 bits (429), Expect = 5e-42
 Identities = 89/188 (47%), Positives = 124/188 (65%), Gaps = 4/188 (2%)

Query: 2   IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
           + VLR GHRP RD R+TTHV LTARA GAD ++        +  E+V D+  R+GGPF V
Sbjct: 23  VAVLRYGHRPGRDDRMTTHVGLTARALGADRVLFPDNAT--QAAETVRDITGRFGGPFDV 80

Query: 62  KFEKSWRKVMKEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYEL 121
           +        ++++ GV VHLTMYG  +  + DE+R   RE    +V+VG EKVP +VYE 
Sbjct: 81  ERTTELNATIEDWPGVVVHLTMYGEQLQSVDDEIRTTHRE-EPVLVVVGGEKVPGDVYEA 139

Query: 122 ADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVVEVQK-DAK 180
           AD+NV + NQPHSEVA LAVFLDRL +G+ L + ++ A+ ++IP+  GK VV+V+  D  
Sbjct: 140 ADWNVGVTNQPHSEVAGLAVFLDRLFDGRELEQGYENAERRVIPEELGKHVVDVEDGDHA 199

Query: 181 QAEASGEG 188
           +  A+G+G
Sbjct: 200 EGAAAGDG 207


>sp|Q9YAD3|YK06_AERPE HYPOTHETICAL PROTEIN APE2006 >gi|7516880|pir||H72503 hypothetical
           protein APE2006 - Aeropyrum pernix (strain K1)
           >gi|5105704|dbj|BAA81016.1| (AP000063) 187aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 187
           
 Score =  166 bits (416), Expect = 2e-40
 Identities = 92/174 (52%), Positives = 117/174 (66%), Gaps = 7/174 (4%)

Query: 2   IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGPFFV 61
           + VLRLGHRPERDKRVTTHVAL ARAFGA+G ++     D  V ESV  VV RWGGPF V
Sbjct: 14  VYVLRLGHRPERDKRVTTHVALVARAFGANGFVLEGV-CDEGVVESVRRVVARWGGPFTV 72

Query: 62  KFEKSWRKVMK---EFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREV 118
           +   S R+ ++   E  G  VHLTMYG+++DD+   +    R     +V+VGAEKV R  
Sbjct: 73  ECGVSGRRYVRMWREGGGEVVHLTMYGVNVDDVAPVIAASPRRK---LVVVGAEKVERFY 129

Query: 119 YELADYNVAIGNQPHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMV 172
           YE AD+NV++G QPHSEVAALA+FLDRL  G+    ++ G  L+++   RGK V
Sbjct: 130 YEEADWNVSVGTQPHSEVAALALFLDRLFRGEWRFIDYSGGFLRVMESQRGKRV 183


>gb|AAK40606.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 160
           
 Score =  143 bits (357), Expect = 1e-33
 Identities = 82/162 (50%), Positives = 110/162 (67%), Gaps = 10/162 (6%)

Query: 17  VTTHVALTARAFGADGIIIVSEEVDLKVKESVEDVVERWGGP--FFVKFEKSWRKVM--- 71
           +TTHV L ARAFGA G+ I  E  D K+ +S+  V++ WGG   F VK  ++ + ++   
Sbjct: 1   MTTHVILVARAFGAKGVYI--EGKDEKMVKSILKVIDSWGGSSYFLVKEIENGKSIVNEW 58

Query: 72  KEFDGVKVHLTMYGIHIDDIIDELREKLREGRDFMVIVGAEKVPREVYELADYNVAIGNQ 131
           KE  G  +HLTMYGI+I+D  D   EK++     ++IVGAEKV    Y  ADYN+AIGNQ
Sbjct: 59  KEKGGTIIHLTMYGININDFQDRF-EKIKY--PLLIIVGAEKVEGWYYHNADYNIAIGNQ 115

Query: 132 PHSEVAALAVFLDRLLEGKGLRKEFKGAKLKIIPQARGKMVV 173
           PHSEVAALA+FLDR+ +G+ L  EF+ AK+KI+PQ  GK V+
Sbjct: 116 PHSEVAALAIFLDRIYKGRELYMEFEDAKIKILPQKAGKKVI 157


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.138    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70603477
Number of Sequences: 2977
Number of extensions: 2844044
Number of successful extensions: 7617
Number of sequences better than 1.0e-10: 9
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7587
Number of HSP's gapped (non-prelim): 9
length of query: 198
length of database: 189,106,746
effective HSP length: 56
effective length of query: 142
effective length of database: 155,591,474
effective search space: 22093989308
effective search space used: 22093989308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)