BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1045 (PAB1045) DE:Hypothetical protein
(122 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75006 hypothetical protein PAB1045 - Pyrococcus abyssi (st... 250 4e-66
pir||D71156 hypothetical protein PH0451 - Pyrococcus horikoshii ... 219 8e-57
gi|11499780 conserved hypothetical protein [Archaeoglobus fulgid... 96 1e-19
emb|CAC11762.1| (AL445064) conserved hypothetical protein [Therm... 80 9e-15
pir||A69230 hypothetical protein MTH971 - Methanobacterium therm... 79 2e-14
>pir||A75006 hypothetical protein PAB1045 - Pyrococcus abyssi (strain Orsay)
>gi|5459001|emb|CAB50487.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 122
Score = 250 bits (632), Expect = 4e-66
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MKVKIRRELLEYLLELAREFYPNEVAGFLREKDGVLEEVLLVPKGYFGSSSVYFDLTLLP 60
MKVKIRRELLEYLLELAREFYPNEVAGFLREKDGVLEEVLLVPKGYFGSSSVYFDLTLLP
Sbjct: 1 MKVKIRRELLEYLLELAREFYPNEVAGFLREKDGVLEEVLLVPKGYFGSSSVYFDLTLLP 60
Query: 61 HDESIKGTFHSHPSPFPYPSKGDLMFFSKFGGVHIIVAFPYTKDSVKAFRSDGSEVELEV 120
HDESIKGTFHSHPSPFPYPSKGDLMFFSKFGGVHIIVAFPYTKDSVKAFRSDGSEVELEV
Sbjct: 61 HDESIKGTFHSHPSPFPYPSKGDLMFFSKFGGVHIIVAFPYTKDSVKAFRSDGSEVELEV 120
Query: 121 VE 122
VE
Sbjct: 121 VE 122
>pir||D71156 hypothetical protein PH0451 - Pyrococcus horikoshii
>gi|3256854|dbj|BAA29537.1| (AP000002) 122aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 122
Score = 219 bits (553), Expect = 8e-57
Identities = 102/122 (83%), Positives = 113/122 (92%)
Query: 1 MKVKIRRELLEYLLELAREFYPNEVAGFLREKDGVLEEVLLVPKGYFGSSSVYFDLTLLP 60
M+VKIRRELLEYLLELA+ FYP EVAGFLR KDGV EEVL+VPKG+FG SSVYFDLTL+P
Sbjct: 1 MRVKIRRELLEYLLELAKSFYPREVAGFLRMKDGVFEEVLIVPKGFFGESSVYFDLTLMP 60
Query: 61 HDESIKGTFHSHPSPFPYPSKGDLMFFSKFGGVHIIVAFPYTKDSVKAFRSDGSEVELEV 120
HDESIKGTFHSHPSPFPYPS+GDLMFFSKFGG+HII AFPY +DSVKAF S+G EVELEV
Sbjct: 61 HDESIKGTFHSHPSPFPYPSEGDLMFFSKFGGIHIIAAFPYDEDSVKAFDSEGREVELEV 120
Query: 121 VE 122
++
Sbjct: 121 ID 122
>gi|11499780 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429577|pir||F69524 conserved hypothetical protein
AF2198 - Archaeoglobus fulgidus
>gi|2648331|gb|AAB89058.1| (AE000954) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 121
Score = 96.3 bits (236), Expect = 1e-19
Identities = 52/120 (43%), Positives = 72/120 (59%), Gaps = 1/120 (0%)
Query: 3 VKIRRELLEYLLELAREFYPNEVAGFLREKDGVLEEVLLVPKGYFGSSSVYFDLTLLPHD 62
+KI R LL+ +LE A+ +P+E L V++E++ +P GS S L +LP
Sbjct: 1 MKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLPF-VSGSVSAVIHLDMLPIG 59
Query: 63 ESIKGTFHSHPSPFPYPSKGDLMFFSKFGGVHIIVAFPYTKDSVKAFRSDGSEVELEVVE 122
+ GT HSHPSP PS+ DL F++FG HIIV +PY ++S K + G EVELEVVE
Sbjct: 60 MKVFGTVHSHPSPSCRPSEEDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELEVVE 119
>emb|CAC11762.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 120
Score = 80.0 bits (194), Expect = 9e-15
Identities = 38/117 (32%), Positives = 64/117 (54%)
Query: 5 IRRELLEYLLELAREFYPNEVAGFLREKDGVLEEVLLVPKGYFGSSSVYFDLTLLPHDES 64
I++ L+ ++E +++ YP E LR + ++ E+ LVP F + P D S
Sbjct: 4 IKKNTLQMIMEASKDSYPKEFGALLRAEGNIIYEIALVPGTIQSERYTLFYMYNKPIDFS 63
Query: 65 IKGTFHSHPSPFPYPSKGDLMFFSKFGGVHIIVAFPYTKDSVKAFRSDGSEVELEVV 121
I G+ HSHPS PS DL FS G VHIIV +P+ ++ A+ G+ ++++++
Sbjct: 64 IVGSVHSHPSGVTLPSDEDLHMFSMTGSVHIIVGYPFNLENYSAYDRSGNRIQVDIL 120
>pir||A69230 hypothetical protein MTH971 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622070|gb|AAB85467.1| (AE000871)
unknown [Methanobacterium thermoautotrophicum]
Length = 144
Score = 79.2 bits (192), Expect = 2e-14
Identities = 45/123 (36%), Positives = 67/123 (53%), Gaps = 3/123 (2%)
Query: 2 KVKIRRELLEYLLELAREFYPNEVAGFL--REKDGVLEEV-LLVPKGYFGSSSVYFDLTL 58
+V + E+++ +LE+AR +P+E A L R++ VL L+ D+ +
Sbjct: 21 RVVVDSEVMDEVLEIARRSHPHEFAALLEGRQEGEVLHVTGLIFLPSETSDEGAVMDVLM 80
Query: 59 LPHDESIKGTFHSHPSPFPYPSKGDLMFFSKFGGVHIIVAFPYTKDSVKAFRSDGSEVEL 118
LP G+ HSHP P PS DL FFSK G H+I+A PYT ++V A+ +G V+
Sbjct: 81 LPPFTGAVGSVHSHPGPVNLPSAADLHFFSKNGLFHLIIAHPYTMETVAAYTRNGDPVDF 140
Query: 119 EVV 121
EVV
Sbjct: 141 EVV 143
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48119102
Number of Sequences: 2977
Number of extensions: 1997140
Number of successful extensions: 4009
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4003
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 189,106,746
effective HSP length: 51
effective length of query: 71
effective length of database: 158,583,909
effective search space: 11259457539
effective search space used: 11259457539
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)