BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1046 (PAB1046) DE:Hypothetical protein
(379 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75006 hypothetical protein PAB1046 - Pyrococcus abyssi (st... 732 0.0
pir||B71156 hypothetical protein PH0449 - Pyrococcus horikoshii ... 581 e-165
gi|11497969 A. fulgidus predicted coding region AF0357 [Archaeog... 359 3e-98
gb|AAK40797.1| Conserved hypothetical protein [Sulfolobus solfat... 224 1e-57
emb|CAC12146.1| (AL445066) conserved hypothetical protein [Therm... 145 6e-34
gi|10803639 ORF H1034 [Halobacterium sp. NRC-1] >gi|7484074|pir|... 128 1e-28
>pir||C75006 hypothetical protein PAB1046 - Pyrococcus abyssi (strain Orsay)
>gi|5459003|emb|CAB50489.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 379
Score = 732 bits (1870), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MLPKELLDAKRSRGKIQLNFANEEHLRLAKAVIIAFKSSLGQRYSELQEKLRHLETASNY 60
MLPKELLDAKRSRGKIQLNFANEEHLRLAKAVIIAFKSSLGQRYSELQEKLRHLETASNY
Sbjct: 1 MLPKELLDAKRSRGKIQLNFANEEHLRLAKAVIIAFKSSLGQRYSELQEKLRHLETASNY 60
Query: 61 KKVRGFAKIIERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSEAAQEFNTSIEE 120
KKVRGFAKIIERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSEAAQEFNTSIEE
Sbjct: 61 KKVRGFAKIIERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSEAAQEFNTSIEE 120
Query: 121 IERAVFADREEERVLVKIPEISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKRILRAI 180
IERAVFADREEERVLVKIPEISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKRILRAI
Sbjct: 121 IERAVFADREEERVLVKIPEISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKRILRAI 180
Query: 181 KRLGLMYEIQGDKIEITGPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLELVEGKRLYI 240
KRLGLMYEIQGDKIEITGPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLELVEGKRLYI
Sbjct: 181 KRLGLMYEIQGDKIEITGPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLELVEGKRLYI 240
Query: 241 FELSSEDDVELPELEKIEEYSSSLEREFSAKIKRILGVEVIYEPGIIKVGESAYIPDFLI 300
FELSSEDDVELPELEKIEEYSSSLEREFSAKIKRILGVEVIYEPGIIKVGESAYIPDFLI
Sbjct: 241 FELSSEDDVELPELEKIEEYSSSLEREFSAKIKRILGVEVIYEPGIIKVGESAYIPDFLI 300
Query: 301 RKGDKEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDELFAEKAMRIKGKDVILMKK 360
RKGDKEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDELFAEKAMRIKGKDVILMKK
Sbjct: 301 RKGDKEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDELFAEKAMRIKGKDVILMKK 360
Query: 361 GKIPYKQVIMKLKEMLTKS 379
GKIPYKQVIMKLKEMLTKS
Sbjct: 361 GKIPYKQVIMKLKEMLTKS 379
>pir||B71156 hypothetical protein PH0449 - Pyrococcus horikoshii
>gi|3256852|dbj|BAA29535.1| (AP000002) 378aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 378
Score = 581 bits (1481), Expect = e-165
Identities = 285/376 (75%), Positives = 339/376 (89%)
Query: 1 MLPKELLDAKRSRGKIQLNFANEEHLRLAKAVIIAFKSSLGQRYSELQEKLRHLETASNY 60
MLP+ELLDA+RSRG+I LNFA++EHL+LAKAV+IAFKSS+GQ Y+ELQEKLRHLETASNY
Sbjct: 1 MLPRELLDARRSRGRIYLNFASDEHLKLAKAVLIAFKSSIGQSYAELQEKLRHLETASNY 60
Query: 61 KKVRGFAKIIERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSEAAQEFNTSIEE 120
KKVRGFAKIIEREC+F +AT+LDP VR+FLFERGYVTSE +RIKVL EAA+ F SIEE
Sbjct: 61 KKVRGFAKIIERECKFSMATNLDPWEVRKFLFERGYVTSEFDRIKVLREAAEHFGASIEE 120
Query: 121 IERAVFADREEERVLVKIPEISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKRILRAI 180
IERA+FADREEE++L ++PEI+ EELIKRYNLSLLQTL F AVRLTF+VSSN+K ILR +
Sbjct: 121 IERAIFADREEEKILEEVPEINPEELIKRYNLSLLQTLMFEAVRLTFKVSSNYKEILRGV 180
Query: 181 KRLGLMYEIQGDKIEITGPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLELVEGKRLYI 240
K+LGLMYE+ + IE+TGPA+LLKLTRKYGTSIAK+IP I++A+EWW+R E+VE KR+YI
Sbjct: 181 KKLGLMYEVIDEGIEVTGPASLLKLTRKYGTSIAKLIPGIVKAEEWWMRAEVVEDKRIYI 240
Query: 241 FELSSEDDVELPELEKIEEYSSSLEREFSAKIKRILGVEVIYEPGIIKVGESAYIPDFLI 300
FELSSE+ V LP++ + EYSSSLEREF++KIKRILGV+VIYEP IIKVG AYIPDFLI
Sbjct: 241 FELSSEESVMLPKIMERIEYSSSLEREFASKIKRILGVDVIYEPEIIKVGNYAYIPDFLI 300
Query: 301 RKGDKEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDELFAEKAMRIKGKDVILMKK 360
+KG+K+VYVEIVGFWT+DYL+RKLEK++K I +LLIVNDELFAEKA R GK+V+LMKK
Sbjct: 301 KKGNKKVYVEIVGFWTRDYLKRKLEKISKAKIQMLLIVNDELFAEKASRFSGKEVLLMKK 360
Query: 361 GKIPYKQVIMKLKEML 376
GKIPYK VIMK+KEML
Sbjct: 361 GKIPYKDVIMKIKEML 376
>gi|11497969 A. fulgidus predicted coding region AF0357 [Archaeoglobus fulgidus]
>gi|7483412|pir||E69294 hypothetical protein AF0357 -
Archaeoglobus fulgidus >gi|2650289|gb|AAB90890.1|
(AE001080) A. fulgidus predicted coding region AF0357
[Archaeoglobus fulgidus]
Length = 468
Score = 359 bits (912), Expect = 3e-98
Identities = 192/382 (50%), Positives = 259/382 (67%), Gaps = 14/382 (3%)
Query: 1 MLPKELLDAKRSRGKIQLNFANEEHLRLAKAVIIAFKSSLGQRYSELQEKLRHLETASNY 60
MLPKELLD +R++G+I FA+E LA+ VI FK LG++Y L ++ R LE A N+
Sbjct: 1 MLPKELLDVRRAKGRIFPKFADERDYELAEKVIEIFKKGLGKKYGNLMKQARKLENAKNF 60
Query: 61 KKVRGFAKI-----IERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSEAAQEFN 115
KKVRGF ++ IE+ C F V + L+P VR LFE G+VTS+ ER +VL A+ F+
Sbjct: 61 KKVRGFIRVLENHCIEKSCAFDVDSELEPRKVRMLLFEHGFVTSKKERDRVLEYVARYFS 120
Query: 116 TSIEEIERAVFADREEERVLVKIPEISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKR 175
T+ E +ERA++ADREEE +L K ++ + LIK YNLSLLQT FNA+RLTF S HK
Sbjct: 121 TTPETVERAMYADREEELILTKFRPLTPDNLIKLYNLSLLQTTLFNALRLTFWASDRHKE 180
Query: 176 ILRAIKRLGLMYEIQGDK----IEITGPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLE 231
I R+IKRLGLMYE+ D +E+TG ATLLK+TRKYG S AK+IP I+RAK W+IR E
Sbjct: 181 IFRSIKRLGLMYELYEDSGRLMVEVTGAATLLKMTRKYGVSFAKLIPWILRAKNWFIRAE 240
Query: 232 LVEGKRLYIFELSSEDDVELPELEKIEEYSSSLEREFSAKIKRILGVEVIYEPGIIKVGE 291
+ + RLYI E+ P++E+ Y S+LE EF+ K+ ++LG EV EP ++K G+
Sbjct: 241 ISDFDRLYIMEIDDRIRDLFPDVEERLSYDSTLEEEFARKM-QMLGYEVEREPDVVKAGK 299
Query: 292 SAYIPDFLIRKGDKEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDELFAEKAMRIK 351
A+IPDF + GDK+VY+EI GFWT +YLR+K EK+ +IPL+LI ++ F + +
Sbjct: 300 YAFIPDFAVNLGDKKVYIEIAGFWTDEYLRKKAEKIKSSSIPLILIARED-FGDGGANV- 357
Query: 352 GKDVILMKKGKIPYKQVIMKLK 373
KDVIL + KIPY +VI LK
Sbjct: 358 -KDVILFSR-KIPYGEVIKALK 377
>gb|AAK40797.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 485
Score = 224 bits (566), Expect = 1e-57
Identities = 135/356 (37%), Positives = 213/356 (58%), Gaps = 18/356 (5%)
Query: 1 MLPKELLDAKRSRGKIQLNFANEEHLRLAKAVIIAFKSSLGQRYSELQEKLRHLETASNY 60
ML +L K +I FA + + +AK VI FK +G + ++ E L++L +Y
Sbjct: 1 MLTSDLARFKIENQRIIPLFATDSDIDVAKEVIDMFK--IGAKVGDILEDLKYLSKIYDY 58
Query: 61 KKVRGFAKIIERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSEAAQEFNTSIEE 120
K V+G KI R C + AT +D + +RR LF RG V E ++ +VL E F+ ++
Sbjct: 59 KLVKGLGKIYLRYCIVESATKIDYIELRRQLFSRGPVLEENDKERVLKEVGDLFH--VDP 116
Query: 121 IERAVFADREEERVLVKIPEISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKRILRAI 180
I +A++ D + E+ +V++P+ S E+L+K YNLSLLQT+ FNA ++T VS K I R I
Sbjct: 117 I-KAMYEDLDVEKKIVELPKFSPEDLLKIYNLSLLQTIIFNAYKVTVSVSDGWKEIARRI 175
Query: 181 KRLGLMYEIQGD--KIEITGPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLELVEGK-- 236
K LGLMY + +IEI GP +L+K+T KYG ++A ++P ++ +W I ++V GK
Sbjct: 176 KMLGLMYLAYENPLRIEIFGPLSLVKMTEKYGRNLAALVPFLVSKNKWTIIADIVLGKNK 235
Query: 237 -RLYIFELSSEDD-----VELPELEKIEEYSSSLEREFSAKIKRIL-GVEVIYEPGIIKV 289
R Y ELSS + E+EK + SS+E +F + +R++ ++ EP I +
Sbjct: 236 RRTYRLELSSGYSKLFKYINDEEMEK--RFDSSIEEKFYEEFRRVIRDWNIVREPEPIVI 293
Query: 290 GESAYIPDFLIRKGDKEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDELFAE 345
+ Y PDF++ KG+ +VYVEI+GFWTK+Y+ K+EK+ P+L+++N+EL E
Sbjct: 294 EKRLYFPDFVLSKGNIKVYVEIMGFWTKEYVNSKIEKLRNFKYPILVLLNEELSYE 349
>emb|CAC12146.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 407
Score = 145 bits (363), Expect = 6e-34
Identities = 105/379 (27%), Positives = 187/379 (48%), Gaps = 34/379 (8%)
Query: 1 MLPKELLDAKRSR-GKIQLNFANEEHLRLAKAVIIAFKSSLGQRYSELQEKLRHLETA-S 58
M P EL+ ++++ G I+ +H+ +A+ VI ++SS G+ E+ + + +E
Sbjct: 1 MFPAELMVVRKAQDGTIRPLMIAPDHVDIAEKVIEIYRSSAGRTRKEISKDIVTIEYGIK 60
Query: 59 NYKKVRGFAKIIERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSEAAQEFNTSI 118
N K VRG A I++R F+ + +D +R FLF+ G S ER + ++ AA+ F+ S
Sbjct: 61 NPKIVRGLALIMDRMSTFRNRSRVDSKQLRGFLFQMGPAVSPEERQEKIALAAEHFSVSP 120
Query: 119 EEIERAVFADREEERVLVKIPEISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKRILR 178
++IE A++ D + E VL + P I+ E L +RYNL L TL + + + +N R +
Sbjct: 121 QDIEEAIYGDMDSENVLDQCPSITPEHLNRRYNLEQLTTLMYRSKFIEVSGINNWYRFIS 180
Query: 179 AIKRLGLMYEIQGD---KIEITGPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLELVEG 235
IKR GL++E QG+ + I GP ++ +YG+S+A+V+ + W + E+
Sbjct: 181 LIKRQGLVFEAQGNPLMSVRIDGPNSVFNNMERYGSSMARVVERLTAFPGWKLHAEVEIK 240
Query: 236 KRLYIFELSSEDDVELPELEKIEEYSSSLEREFSAKIKRILGVEVIYEPGIIKVGESAYI 295
R+Y +L S LPE + EE E I +P + +G +
Sbjct: 241 DRVYSVDLDSSISYYLPETDIEEE-------------------EAIPDP--VVIGTRVFF 279
Query: 296 PDFLIRKGDKEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDELFAEKAMRIKGKDV 355
P +I ++VYV+IV + + ++R+ E + I + V E + +G
Sbjct: 280 PTRIINVHGQDVYVDIVYHMSPEAIKRRDEMIRSSGIKWITAVVGE-----CKKFQG--- 331
Query: 356 ILMKKGKIPYKQVIMKLKE 374
+L + ++ + +I K E
Sbjct: 332 VLCFRNRVDWDAIIAKASE 350
>gi|10803639 ORF H1034 [Halobacterium sp. NRC-1] >gi|7484074|pir||T08309
conserved hypothetical protein H1034 - Halobacterium sp.
(strain NRC-1) plasmid pNRC100
>gi|2822370|gb|AAC82876.1| (AF016485) ORF H1034
[Halobacterium sp. NRC-1] >gi|10584183|gb|AAG20804.1|
(AE005148) Vng6129c [Halobacterium sp. NRC-1]
Length = 449
Score = 128 bits (318), Expect = 1e-28
Identities = 100/408 (24%), Positives = 181/408 (43%), Gaps = 68/408 (16%)
Query: 1 MLPKELLDAKRSRGKIQLNFANEE---HLRLAKAVIIAFKSSLGQRYSELQEKLRHLETA 57
ML +L ++ G + F + + + A +I F+ LG+ EL+E + L A
Sbjct: 1 MLTADLARSRTRDGTVTPLFIDTDEPQYRETAAELIQLFEDHLGESKGELEETIDELTIA 60
Query: 58 -SNYKKVRGFAKIIERECEFQVATSLDPLSVRRFLFERGYVTSELERIKVLSE------- 109
++YK ++G AK+++ ECEF+ + DP +R+ LFE+ + + R L E
Sbjct: 61 DTDYKLIQGLAKLLKDECEFETVAAADPREIRQQLFEKANESYPIVRQPTLGEDAHWLDV 120
Query: 110 ---AAQEFNTSIEEIERAVFADREEERVLVKIPE-------------------------- 140
A S+E+ + ++AD E+ + LV+ +
Sbjct: 121 YTAVADRLGISLEQCHQGMYADLEDNKQLVQFGDRVADDYDRGDVSVATTRLTGDSEQTY 180
Query: 141 ----ISEEELIKRYNLSLLQTLAFNAVRLTFRVSSNHKRILRAIKRLGLMYEI-----QG 191
I+ E L+ RYNL+L Q + ++A ++ RV + +K GLM+ I G
Sbjct: 181 AEDTITVEWLLTRYNLALAQAVLYDATQMRIRVWDHFGTAFSYVKLFGLMHRIYPIDTDG 240
Query: 192 DKIEIT-----------GPATLLKLTRKYGTSIAKVIPEIIRAKEWWIRLELVEGK---- 236
+++ T GPA+L +RKYG ++ +P + W + E++ +
Sbjct: 241 NRVSTTDAADGYEAVLDGPASLFSQSRKYGIRLSNFLPALPLCDRWEMHAEILNDEDSQR 300
Query: 237 -RLYIFELSSEDDVELPELEKIEEYSSSLEREFSAKIKRI-LGVEVIYEPGIIKVGESAY 294
F L + + + ++ S +ER + K R +++ E ++ +G
Sbjct: 301 GETLSFGLDHTEGLSSHYTAQ-SDFDSDVERTLAQKWNRANTDWDLVREDDVLDLGAEVM 359
Query: 295 IPDFLIRKGD-KEVYVEIVGFWTKDYLRRKLEKVTKLNIPLLLIVNDE 341
IPDF + D + +EIVGFWT +YL +KL K+ ++ LL+ E
Sbjct: 360 IPDFALEHPDGRRAILEIVGFWTPEYLEKKLAKLRDADVDHLLVAVSE 407
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.372
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122349866
Number of Sequences: 2977
Number of extensions: 4874634
Number of successful extensions: 16277
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16261
Number of HSP's gapped (non-prelim): 7
length of query: 379
length of database: 189,106,746
effective HSP length: 60
effective length of query: 319
effective length of database: 153,197,526
effective search space: 48870010794
effective search space used: 48870010794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)