BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1054 (PAB1054) DE:Hypothetical protein
         (253 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75008 hypothetical protein PAB1054 - Pyrococcus abyssi (st...   493  e-139
pir||D71146 hypothetical protein PH0382 - Pyrococcus horikoshii ...   196  3e-49

>pir||G75008 hypothetical protein PAB1054 - Pyrococcus abyssi (strain Orsay)
           >gi|5459023|emb|CAB50509.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 253
           
 Score =  493 bits (1256), Expect = e-139
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MMKMRKEVISGIMLITIGSITGILGMIYGKMNVLNLGLSGIILGGIVLAIKSEDYVKRSS 60
           MMKMRKEVISGIMLITIGSITGILGMIYGKMNVLNLGLSGIILGGIVLAIKSEDYVKRSS
Sbjct: 1   MMKMRKEVISGIMLITIGSITGILGMIYGKMNVLNLGLSGIILGGIVLAIKSEDYVKRSS 60

Query: 61  LETIVEALQEETKKIVRDLGLEGNAIYIPPTENLPHGAIFIPLYRDYDIDLARISYDTPF 120
           LETIVEALQEETKKIVRDLGLEGNAIYIPPTENLPHGAIFIPLYRDYDIDLARISYDTPF
Sbjct: 61  LETIVEALQEETKKIVRDLGLEGNAIYIPPTENLPHGAIFIPLYRDYDIDLARISYDTPF 120

Query: 121 LTEVSSENQMGLIIGSSAVNLLKKFEEHLEGEITSVGEAESASSSVLKALELAESVYIED 180
           LTEVSSENQMGLIIGSSAVNLLKKFEEHLEGEITSVGEAESASSSVLKALELAESVYIED
Sbjct: 121 LTEVSSENQMGLIIGSSAVNLLKKFEEHLEGEITSVGEAESASSSVLKALELAESVYIED 180

Query: 181 VGDSFEVYVEPKNIEFCKRNVKDCRQVACPICASILLALAKGSGELIESESFEIVNKRVR 240
           VGDSFEVYVEPKNIEFCKRNVKDCRQVACPICASILLALAKGSGELIESESFEIVNKRVR
Sbjct: 181 VGDSFEVYVEPKNIEFCKRNVKDCRQVACPICASILLALAKGSGELIESESFEIVNKRVR 240

Query: 241 IKAKKLGGAEKWM 253
           IKAKKLGGAEKWM
Sbjct: 241 IKAKKLGGAEKWM 253


>pir||D71146 hypothetical protein PH0382 - Pyrococcus horikoshii
           >gi|3256774|dbj|BAA29457.1| (AP000002) 176aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 176
           
 Score =  196 bits (492), Expect = 3e-49
 Identities = 98/174 (56%), Positives = 128/174 (73%)

Query: 2   MKMRKEVISGIMLITIGSITGILGMIYGKMNVLNLGLSGIILGGIVLAIKSEDYVKRSSL 61
           M+++ E+ISGI +  IG++  +  ++ G  + +N+GL+GI LG IVL IK ++YVKRS+L
Sbjct: 1   MRVKLELISGISIALIGTMMLLYSVVSGNSDFINMGLAGIFLGAIVLTIKGQEYVKRSTL 60

Query: 62  ETIVEALQEETKKIVRDLGLEGNAIYIPPTENLPHGAIFIPLYRDYDIDLARISYDTPFL 121
              + A  E  ++IV DL LEGNA+YIPP ENLP G +FIPL +D+DID  R   D  FL
Sbjct: 61  SLTLRAYHESLRRIVEDLELEGNALYIPPYENLPKGGLFIPLRKDFDIDPGRFGEDIVFL 120

Query: 122 TEVSSENQMGLIIGSSAVNLLKKFEEHLEGEITSVGEAESASSSVLKALELAES 175
           T V SE QMGL++ S  + LL+KFEEHLEGEITSVGE ESASSSVLKAL LA++
Sbjct: 121 TNVGSERQMGLLLRSPGLELLEKFEEHLEGEITSVGEVESASSSVLKALNLAKA 174


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.375 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83647120
Number of Sequences: 2977
Number of extensions: 3243519
Number of successful extensions: 11530
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11528
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 189,106,746
effective HSP length: 59
effective length of query: 194
effective length of database: 153,796,013
effective search space: 29836426522
effective search space used: 29836426522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)