BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1055 (PAB1055) DE:Hypothetical protein
(328 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75008 hypothetical protein PAB1055 - Pyrococcus abyssi (st... 668 0.0
pir||C71146 hypothetical protein PH0381 - Pyrococcus horikoshii ... 563 e-159
pir||D69149 hypothetical protein MTH381 - Methanobacterium therm... 102 8e-21
>pir||H75008 hypothetical protein PAB1055 - Pyrococcus abyssi (strain Orsay)
>gi|5459024|emb|CAB50510.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 328
Score = 668 bits (1706), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MKKYWDLITAIALSLLLDLIIAIAPNSIIRKILGLVFVLFLPGYVFITALFPEKKELDNL 60
MKKYWDLITAIALSLLLDLIIAIAPNSIIRKILGLVFVLFLPGYVFITALFPEKKELDNL
Sbjct: 1 MKKYWDLITAIALSLLLDLIIAIAPNSIIRKILGLVFVLFLPGYVFITALFPEKKELDNL 60
Query: 61 ERLALSFGLSIAIVPLIGLALNYTSWGIRLIPILVSLTVFNVIFSIIAIYRRKNAIKPWI 120
ERLALSFGLSIAIVPLIGLALNYTSWGIRLIPILVSLTVFNVIFSIIAIYRRKNAIKPWI
Sbjct: 61 ERLALSFGLSIAIVPLIGLALNYTSWGIRLIPILVSLTVFNVIFSIIAIYRRKNAIKPWI 120
Query: 121 PWITIERIKEELEWDKASKLDKALTVILIIAIFASLGTLIYVITHPKPGEAFTEFYILGP 180
PWITIERIKEELEWDKASKLDKALTVILIIAIFASLGTLIYVITHPKPGEAFTEFYILGP
Sbjct: 121 PWITIERIKEELEWDKASKLDKALTVILIIAIFASLGTLIYVITHPKPGEAFTEFYILGP 180
Query: 181 YGKAADYPTELLVNETGRVIIGIVNHEHRNVTYFVEIWLVNLTYNFTTNETIIHEMYLMD 240
YGKAADYPTELLVNETGRVIIGIVNHEHRNVTYFVEIWLVNLTYNFTTNETIIHEMYLMD
Sbjct: 181 YGKAADYPTELLVNETGRVIIGIVNHEHRNVTYFVEIWLVNLTYNFTTNETIIHEMYLMD 240
Query: 241 RFNVTLPSIPVNIEGNWTPQFEMNYTFKIDKPGKWQLWFLLFKDKEPEIPEACLKGEDCS 300
RFNVTLPSIPVNIEGNWTPQFEMNYTFKIDKPGKWQLWFLLFKDKEPEIPEACLKGEDCS
Sbjct: 241 RFNVTLPSIPVNIEGNWTPQFEMNYTFKIDKPGKWQLWFLLFKDKEPEIPEACLKGEDCS 300
Query: 301 KTEGWRIMEAINGTIQSLKLNIDVKGLP 328
KTEGWRIMEAINGTIQSLKLNIDVKGLP
Sbjct: 301 KTEGWRIMEAINGTIQSLKLNIDVKGLP 328
>pir||C71146 hypothetical protein PH0381 - Pyrococcus horikoshii
>gi|3256773|dbj|BAA29456.1| (AP000002) 327aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 327
Score = 563 bits (1435), Expect = e-159
Identities = 265/327 (81%), Positives = 297/327 (90%)
Query: 1 MKKYWDLITAIALSLLLDLIIAIAPNSIIRKILGLVFVLFLPGYVFITALFPEKKELDNL 60
M+KYWDLI+ I LSLLLDLII +AP+SIIRKILGL FVLF PGYVF+T+LFPE+KELDNL
Sbjct: 1 MRKYWDLISVIVLSLLLDLIIFVAPDSIIRKILGLAFVLFFPGYVFVTSLFPERKELDNL 60
Query: 61 ERLALSFGLSIAIVPLIGLALNYTSWGIRLIPILVSLTVFNVIFSIIAIYRRKNAIKPWI 120
ERLALSFGLSIAIVPLIGL LNYT WGIRLIPILVSLT+F V+FSIIA+YRRKNAIKPWI
Sbjct: 61 ERLALSFGLSIAIVPLIGLVLNYTPWGIRLIPILVSLTIFVVVFSIIAMYRRKNAIKPWI 120
Query: 121 PWITIERIKEELEWDKASKLDKALTVILIIAIFASLGTLIYVITHPKPGEAFTEFYILGP 180
PWITIE +K ELEW++AS +DKALTVILIIAI AS+G L YVITHPKPGEAFTEFYILGP
Sbjct: 121 PWITIEDLKRELEWEEASTVDKALTVILIIAIVASIGVLAYVITHPKPGEAFTEFYILGP 180
Query: 181 YGKAADYPTELLVNETGRVIIGIVNHEHRNVTYFVEIWLVNLTYNFTTNETIIHEMYLMD 240
GKA+DYPT+L V + G VIIGIVNHEHRNVTY+VEIWLVNLTYNFTTNET IHEMYLM
Sbjct: 181 KGKASDYPTKLFVGQNGTVIIGIVNHEHRNVTYYVEIWLVNLTYNFTTNETTIHEMYLMH 240
Query: 241 RFNVTLPSIPVNIEGNWTPQFEMNYTFKIDKPGKWQLWFLLFKDKEPEIPEACLKGEDCS 300
FNVTLP IPVNIEGNWTPQFE NYTF I++PG+WQ+WFLLFKD+EP IP+ CL+GE+C+
Sbjct: 241 TFNVTLPPIPVNIEGNWTPQFETNYTFSINRPGRWQVWFLLFKDREPPIPKECLEGENCA 300
Query: 301 KTEGWRIMEAINGTIQSLKLNIDVKGL 327
+E WRI+EAINGTIQSLKLN+ VKG+
Sbjct: 301 DSEAWRILEAINGTIQSLKLNVQVKGI 327
>pir||D69149 hypothetical protein MTH381 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621442|gb|AAB84887.1| (AE000823)
unknown [Methanobacterium thermoautotrophicum]
Length = 605
Score = 102 bits (251), Expect = 8e-21
Identities = 71/228 (31%), Positives = 114/228 (49%), Gaps = 13/228 (5%)
Query: 6 DLITAIALSLLLDLIIAIAPNSIIRKILGLVFVLFLPGYVFITALFPEKKELDNLERLAL 65
DL+ + LS+ I +P ++ + L VL +PGY+ A+ P + +L ERL L
Sbjct: 341 DLLVMVLLSIFTIAAINSSPRGVVEALFYLQ-VLLIPGYILTAAVAPLRDQLSVPERLFL 399
Query: 66 SFGLSIAIVPLIGLALNYTSWGIRLIPILV-SLTVFNVIFSIIAIYRRKNAIKPWIPWIT 124
F +SI I +I L + + P+L S++ ++I + A RR A +
Sbjct: 400 EFSVSIIISSVIALLMG---GHVTFKPLLARSISAISLIMTPAAFIRRYRA-GGLAYSVD 455
Query: 125 IERIKEELEWDKASKLDKALTVILIIAIFASLGTLIYVITHPKPGEAFTEFYILGPYGKA 184
+ RI + K+ L+ +L+ A + +Y+ +P P E FTEFYILGP GKA
Sbjct: 456 VRRIPSPRSLSRDGKVSLILSAVLV----ALVAVTVYLTLNPVPSERFTEFYILGPGGKA 511
Query: 185 ADYPTELLVNETGRVIIGIVNHEHRNVTYFVEIWLVNLTYNFTTNETI 232
YP + E V++G+VN E+RN TY + +V + + NET+
Sbjct: 512 YGYPENVTAGERVEVMVGVVNREYRNETYRM---VVRIGGDVLRNETL 556
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.144 0.442
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128094997
Number of Sequences: 2977
Number of extensions: 5473632
Number of successful extensions: 15008
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15004
Number of HSP's gapped (non-prelim): 3
length of query: 328
length of database: 189,106,746
effective HSP length: 51
effective length of query: 277
effective length of database: 158,583,909
effective search space: 43927742793
effective search space used: 43927742793
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 165 (68.7 bits)