BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1059 (bchP-like) DE:geranylgeranyl hydrogenase related
(370 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75009 geranylgeranyl oxidoreductase related PAB1059 - Pyro... 740 0.0
pir||A71143 hypothetical protein PH0356 - Pyrococcus horikoshii ... 626 e-178
sp|Q58915|YF20_METJA HYPOTHETICAL PROTEIN MJ1520 >gi|2128915|pir... 153 4e-36
pir||H69196 conserved hypothetical protein MTH725 - Methanobacte... 131 1e-29
pir||A75205 bacteriochlorophyll synthase 43 kda chain or geranyl... 127 2e-28
pir||C71240 hypothetical protein PH0181 - Pyrococcus horikoshii ... 126 4e-28
gi|11498628 bacteriochlorophyll synthase, 43 kDa subunit (chlP-2... 119 5e-26
sp|Q57952|Y532_METJA HYPOTHETICAL PROTEIN MJ0532 PRECURSOR >gi|2... 103 3e-21
gi|11498075 bacteriochlorophyll synthase, 43 kDa subunit (chlP-1... 100 3e-20
pir||F70311 conserved hypothetical protein aq_121 - Aquifex aeol... 92 1e-17
pir||A69135 bacteriochlorophyll synthase 43 kDa subunit - Methan... 89 1e-16
pir||H69096 bacteriochlorophyll synthase 43 kDa subunit - Methan... 87 4e-16
emb|CAC12613.1| (AL445067) geranylgeranyl reductase related prot... 86 5e-16
pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - common ice... 80 3e-14
sp|P26172|BCHP_RHOCA GERANYLGERANYL HYDROGENASE >gi|79448|pir||S... 78 2e-13
emb|CAA07683.1| (AJ007789) geranylgeranyl reductase [Nicotiana t... 75 1e-12
pir||B70310 conserved hypothetical protein aq_104 - Aquifex aeol... 75 2e-12
dbj|BAA90346.1| (AP001080) Similar to geranylgeranyl hydrogenase... 73 5e-12
emb|CAA74372.1| (Y14044) geranylgeranyl reductase [Arabidopsis t... 71 2e-11
gb|AAF15919.1|AC011765_15 (AC011765) geranylgeranyl reductase; 4... 71 2e-11
gb|AAD28640.1|AAD28640 (AF068686) geranylgeranyl hydrogenase [Gl... 71 2e-11
pir||T50913 geranylgeranyl bacteriochlorophyll reductase [import... 70 5e-11
emb|CAC11656.1| (AL445064) geranylgeranyl reductase related prot... 69 6e-11
>pir||F75009 geranylgeranyl oxidoreductase related PAB1059 - Pyrococcus abyssi
(strain Orsay) >gi|5459030|emb|CAB50516.1| (AJ248288)
geranylgeranyl hydrogenase related [Pyrococcus abyssi]
Length = 370
Score = 740 bits (1889), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MNYDALIIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAI 60
MNYDALIIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAI
Sbjct: 1 MNYDALIIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAI 60
Query: 61 LNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFKDG 120
LNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFKDG
Sbjct: 61 LNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFKDG 120
Query: 121 KAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFRREWVEVW 180
KAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFRREWVEVW
Sbjct: 121 KAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFRREWVEVW 180
Query: 181 VNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLKVRRINPSNVLEIKSGAVVLGWRS 240
VNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLKVRRINPSNVLEIKSGAVVLGWRS
Sbjct: 181 VNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLKVRRINPSNVLEIKSGAVVLGWRS 240
Query: 241 PWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAILNGNLAEYEKNCSWVKEQVKF 300
PWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAILNGNLAEYEKNCSWVKEQVKF
Sbjct: 241 PWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAILNGNLAEYEKNCSWVKEQVKF 300
Query: 301 GLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKADFDDHVKTAKALLRNPRLLARLIR 360
GLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKADFDDHVKTAKALLRNPRLLARLIR
Sbjct: 301 GLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKADFDDHVKTAKALLRNPRLLARLIR 360
Query: 361 IAPIILRTLL 370
IAPIILRTLL
Sbjct: 361 IAPIILRTLL 370
>pir||A71143 hypothetical protein PH0356 - Pyrococcus horikoshii
>gi|3256747|dbj|BAA29430.1| (AP000002) 370aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 370
Score = 626 bits (1596), Expect = e-178
Identities = 295/370 (79%), Positives = 344/370 (92%)
Query: 1 MNYDALIIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAI 60
M YD LIIGGGPVGNYLASLLAGK++V V+E+KGAFGGKACTGI+GAENYESLGLP+KAI
Sbjct: 1 MRYDVLIIGGGPVGNYLASLLAGKVNVGVIEKKGAFGGKACTGIVGAENYESLGLPEKAI 60
Query: 61 LNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFKDG 120
LNAF GAFFIS+ KVFEIHR +PQAYL+DRKVLERELAKRA+++GA+YYL+TNF+GFK+G
Sbjct: 61 LNAFNGAFFISREKVFEIHRSLPQAYLIDRKVLERELAKRAMRKGAEYYLSTNFLGFKNG 120
Query: 121 KAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFRREWVEVW 180
KAILQHLDSR EI+AKYYVGADGVNS VA+EI A+T GEVL+GWE+EVLGNF+R+ VEVW
Sbjct: 121 KAILQHLDSRLEIEAKYYVGADGVNSSVAKEIQARTEGEVLKGWEIEVLGNFKRDHVEVW 180
Query: 181 VNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLKVRRINPSNVLEIKSGAVVLGWRS 240
VNK+INPEFFFWVAPINEEEAR+GTFG+++SLAKFLK+RR+NP +EIKSGAV+LGWR
Sbjct: 181 VNKNINPEFFFWVAPINEEEARVGTFGEIDSLAKFLKIRRLNPFKTVEIKSGAVILGWRK 240
Query: 241 PWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAILNGNLAEYEKNCSWVKEQVKF 300
PWVK NVALVGDAAL IKPTTAGGIVFG+YCA++LAKAILN NL YE+ CSWV+EQV F
Sbjct: 241 PWVKGNVALVGDAALQIKPTTAGGIVFGAYCAKSLAKAILNDNLEIYERECSWVREQVSF 300
Query: 301 GLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKADFDDHVKTAKALLRNPRLLARLIR 360
GL+IRKVFK+LTQ++IEEIFEVL SE+ RK+I+E+ADFDDHVKT KALL+NPR+LA+LIR
Sbjct: 301 GLKIRKVFKNLTQEKIEEIFEVLSSEEVRKIIVERADFDDHVKTVKALLKNPRVLAKLIR 360
Query: 361 IAPIILRTLL 370
I+PIILR LL
Sbjct: 361 ISPIILRALL 370
>sp|Q58915|YF20_METJA HYPOTHETICAL PROTEIN MJ1520 >gi|2128915|pir||G64489 hypothetical
protein MJ1520 - Methanococcus jannaschii
>gi|1592151|gb|AAB99539.1| (U67593) bacteriochlorophyll
synthase 43 kDa subunit (chlP) [Methanococcus
jannaschii]
Length = 387
Score = 153 bits (382), Expect = 4e-36
Identities = 107/374 (28%), Positives = 185/374 (48%), Gaps = 29/374 (7%)
Query: 2 NYDALIIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAIL 61
+YD +IIGGGPVG + + V E + C G+I + LG P K ++
Sbjct: 5 DYDVVIIGGGPVGCITGEYIKNGRVLIVEEHQSIGVPLQCAGLISKNGVKELGNP-KGVV 63
Query: 62 NAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFKDG- 120
N +GA+ SK + +I + +AY+ +RKV+++++A RA K+ D+ L KD
Sbjct: 64 NKVRGAYIYSKNSMVKIGNEGIRAYIFERKVMDKDIAIRAAKK-CDFLLKAYGKIEKDKN 122
Query: 121 --KAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGA---KTRGEVLRGWELEVLG-NFRR 174
K + HL + + K VGADG + +++G K R E+L + E++
Sbjct: 123 GYKVEITHLGEKITLNPKIIVGADGAKTITGKKLGLVNNKNR-EILSSCQFEMVNAEVDD 181
Query: 175 EWVEVWVNKDINPEFFFWVAPINEEEARIGTFGD---VESLAKFLKVRRI-----NPSNV 226
++V +++++ + FF W+ P+ ++ R+G L +F+ +I + +
Sbjct: 182 DFVYIFLDRKYSERFFTWIIPMGKDRVRVGLIDRGNCYNKLIRFINENKIAKEILKNATI 241
Query: 227 LEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAI---LN-- 281
E +G++ +G+ KDNV LVGDAA H+KP + GG+ FG+ + + I LN
Sbjct: 242 TEFSTGSLPIGYLDKTFKDNVLLVGDAACHVKPLSGGGLYFGAMGGKIAGEVISKYLNED 301
Query: 282 -GNLAEYEKNCSWVK---EQVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKAD 337
NL Y+K W + ++K GLR+RK+F L +++I E L D I + D
Sbjct: 302 IENLELYDKR--WKETFGSEIKNGLRVRKLFLKLGNDTLDKIIEKLSKSDLIDYINKHGD 359
Query: 338 FDDHVKTAKALLRN 351
D + +L++
Sbjct: 360 MDRQASLSIKVLKS 373
>pir||H69196 conserved hypothetical protein MTH725 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621814|gb|AAB85230.1| (AE000852) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 375
Score = 131 bits (326), Expect = 1e-29
Identities = 115/380 (30%), Positives = 184/380 (48%), Gaps = 31/380 (8%)
Query: 2 NYDALIIGGGPVGNYLASLLAGK-MSVAVVERKGAFG-GKACTGIIGAENYESLGLPDKA 59
+YD LI+G GP G+ LA L A K V + ERK G C G++ E LPD+
Sbjct: 3 DYDVLIMGAGPAGSTLARLTATKGFRVGLFERKKIIGLPLQCAGLVSHRIMEVNVLPDEF 62
Query: 60 ILNAFKGAFFISKTKV-FEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFK 118
ILN+ +GA S + + + + P+A+++DR ++ LA+ A++ GA+ T F
Sbjct: 63 ILNSVRGAVLHSPSGIKLRVSKDRPEAHVIDRTAYDQHLAELAMEAGAELTKGTAVRDFN 122
Query: 119 DGKAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFRREWVE 178
+ ++ E+ A V A G S A+ R E++ ++V+
Sbjct: 123 EKTGHVRVNGD--ELSADVLVDARG-QSAAPSRYPARQYLVRFRDSEMDT------DFVD 173
Query: 179 VWVNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLKVRRINPSN---VLEIKSGAVV 235
+ V+ ++P F W PI+E+ AR+G FG ++L +FLK + S+ +LE G +
Sbjct: 174 LKVDSRLSPGFM-WRIPIDEQTARVGVFGPQQNLKEFLKGFISDLSSDFEILESHHGFIP 232
Query: 236 ---LGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAIL-----NGNLAEY 287
L R V+ L+GDAA +KPTT GGIV S A A+ I + +L EY
Sbjct: 233 RPDLDLRL--VRGRCILLGDAAGQVKPTTGGGIVLASRAAGVAAEVIQGVLEGDADLKEY 290
Query: 288 EKNCSWV-KEQVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKADFDDHVKTAK 346
E C + ++K +R+++ F+ L+ K+++ IF + A +I E D D +
Sbjct: 291 EDACRKIHMSEMKNQMRVQRTFRLLSDKDLDHIFLKMKEYGAEDIISEYGDMDRQTPLIR 350
Query: 347 ALLRNPRLLARLIRIAPIIL 366
L+ L RI P IL
Sbjct: 351 EFLKR----GILFRIIPSIL 366
>pir||A75205 bacteriochlorophyll synthase 43 kda chain or geranylgeranyl
hydrogenase PAB0109 - Pyrococcus abyssi (strain Orsay)
>gi|5457597|emb|CAB49088.1| (AJ248283)
BACTERIOCHLOROPHYLL SYNTHASE 43 KDA SUBUNIT or
GERANYLGERANYL HYDROGENASE [Pyrococcus abyssi]
Length = 393
Score = 127 bits (317), Expect = 2e-28
Identities = 117/401 (29%), Positives = 195/401 (48%), Gaps = 39/401 (9%)
Query: 1 MNYDALIIGGGPVGNYLASLLA-GKMSVAVVERKGAFGG-KACTGIIGAENYESLGLP-D 57
M YD +++G G G +A +A SV +V++K A G K C I E ++ +P D
Sbjct: 1 MKYDVVVVGSGVAGPTVARDVAKAGFSVLLVDKKAAIGTPKQCAEGITIEVFKEFDIPYD 60
Query: 58 KAILNA--FKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFV 115
K +N + + E+ + +++RKV ++ LA A K GA+ T V
Sbjct: 61 KRFINREIYGAKIYSPSGYTAELRYKHVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
Query: 116 GF--KDGKAI---LQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRG---EVLRGWELE 167
++GK + +H EI+AK V ADGV S +A++ G T E G+E E
Sbjct: 121 DVIRRNGKIVGVRAKHEGEPLEIEAKVIVAADGVESTIARKAGINTYAPPHEFDSGYEYE 180
Query: 168 VL-GNFRREWVEVWVNKDINPEFFFWVAPINEEEAR--IGTFGDVESLAKF-----LKVR 219
+L + + + ++ ++ P + W+ P +E+ A IG D AK+ LK
Sbjct: 181 MLIEGYDPDLIHLFFGNEVAPRGYVWIFPKDEDRANVGIGIASDHPQTAKYYLDKWLKEN 240
Query: 220 RINPSNVLEIKSGAV-VLGWRSPWVKDNVALVGDAALHIKPTTAGG----IVFGSYCARA 274
I +LE+ G V V G+ VKDNV +VGDAA + P GG + S A+
Sbjct: 241 NIPMRKILEVNVGLVPVGGFVKELVKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKW 300
Query: 275 LAKAILNGNLAEYEKNCS---WVKE--QVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDAR 329
+ KA+ NL E KN S W E +++ L++RK + LT ++++ +++ D
Sbjct: 301 IIKALEEENL-ELLKNYSEEWWRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTD-- 357
Query: 330 KLIIEKADFDDHVKTAKALLRNPRLLARLIRIAPIILRTLL 370
+EK ++++ KAL+++P++L R+ IL+ LL
Sbjct: 358 ---LEKLAGGNYLEVVKALMKHPKVLMSRRRLE--ILKALL 393
>pir||C71240 hypothetical protein PH0181 - Pyrococcus horikoshii
>gi|3256567|dbj|BAA29250.1| (AP000001) 393aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 393
Score = 126 bits (314), Expect = 4e-28
Identities = 110/400 (27%), Positives = 192/400 (47%), Gaps = 37/400 (9%)
Query: 1 MNYDALIIGGGPVGNYLASLLA-GKMSVAVVERKGAFGG-KACTGIIGAENYESLGLP-D 57
M YD +++G G G +A +A SV +V++K A G K C + ++ +P D
Sbjct: 1 MRYDVVVVGSGVAGPIVARNVAKAGFSVLLVDKKPAIGAPKQCAEGLTINAFKQFDIPYD 60
Query: 58 KAILNA--FKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFV 115
K +N + + E+ + +++RKV ++ LA A K GA+ T V
Sbjct: 61 KRFINREIYGAKIYSPSGYTAELRYKEVSGVILERKVFDKMLAYYAAKAGAEVLARTEVV 120
Query: 116 GF--KDGKAI---LQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRG---EVLRGWELE 167
++GK + +H EI+AK V ADGV S +A++ G T E G+E E
Sbjct: 121 DVIRREGKIVGVKAKHEGEPMEIEAKVIVAADGVESTIARKAGIDTYAPPHEFDSGYEYE 180
Query: 168 -VLGNFRREWVEVWVNKDINPEFFFWVAPINEEEAR--IGTFGDVESLAKF-----LKVR 219
++ F + + ++ ++ P + WV P +E+ A IG D E AK+ LK
Sbjct: 181 MIIEGFDPDLIHLFFGNEVAPRGYVWVFPKDEDRANVGIGINSDNEKTAKYYLDKWLKEN 240
Query: 220 RINPSNVLEIKSGAV-VLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKA 278
I + +LE+ G + V G+ VK+NV +VGDAA + P GG+ + +K
Sbjct: 241 NIPRNKILEVNVGLIPVGGFVKELVKENVLVVGDAARQVNPIHGGGMAEAMKASTIASKW 300
Query: 279 IL------NGNLAEYEKNCSWVKE--QVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDARK 330
I+ N L + K W E +++ LR+R+ + LT ++++ +++ D
Sbjct: 301 IIKALEEENLELLKNYKEEWWKTEGPRMEKLLRLRRAMEKLTDEDLDVFVQLVSGTD--- 357
Query: 331 LIIEKADFDDHVKTAKALLRNPRLLARLIRIAPIILRTLL 370
+EK ++++ KAL+++P++L R+ IL+ LL
Sbjct: 358 --LEKIAGGNYIEVVKALMKHPKVLMSRRRLE--ILKALL 393
>gi|11498628 bacteriochlorophyll synthase, 43 kDa subunit (chlP-2)
[Archaeoglobus fulgidus] >gi|7450120|pir||G69377
bacteriochlorophyll synthase, 43 kDa subunit (chlP-2)
homolog - Archaeoglobus fulgidus
>gi|2649572|gb|AAB90220.1| (AE001033)
bacteriochlorophyll synthase, 43 kDa subunit (chlP-2)
[Archaeoglobus fulgidus]
Length = 364
Score = 119 bits (296), Expect = 5e-26
Identities = 111/375 (29%), Positives = 180/375 (47%), Gaps = 34/375 (9%)
Query: 4 DALIIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKA-CTGIIGAENYESLG---LPDKA 59
DA ++GGGP G+ A LL VA+ E + G C G++ + Y+ L +KA
Sbjct: 2 DAAVVGGGPAGSLAAILLGKSYDVALFEEHQSAGFPVQCAGLVSDKCYKKLKEHCKAEKA 61
Query: 60 ILNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFKD 119
I N KGAFF S + + + +A +V+RK+L+R L +RA +R A FV K
Sbjct: 62 IENHIKGAFFFSPSGKIVLEGR-GEAVVVERKILDRLLFERAAER------AKVFVKEKA 114
Query: 120 GKAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFR---REW 176
+ + E+ A+ +GADGVNS V + G T G ++V F
Sbjct: 115 RLNGFRIITPSREVSAEKIIGADGVNSTVREHFGFPTMGFFTA---VQVEAKFEPLDENC 171
Query: 177 VEVWVNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLKVRRINPSNVLEIKSGAVVL 236
VE++ + + FF + P+ + ARIG L + + +PS ++ AV L
Sbjct: 172 VELYFGGNWSDSFFAYAIPLGDT-ARIGVVSRSSPLRYLENLMKRHPSVSGRVEGSAVEL 230
Query: 237 GWRS------PWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAILNGNLAEYEKN 290
+ + K +VAL+GDAA +KP T GG+ + A LA++ +L YEK
Sbjct: 231 NAGAIPDRLVKFSKRDVALIGDAAGMVKPYTGGGLYYHLIAAEKLAESF--PDLKGYEK- 287
Query: 291 CSWVKE---QVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKAD--FDDHVKTA 345
S++KE + +FG +RK++ SL +++E++F + D R + ++ +
Sbjct: 288 -SYLKEMGREYRFGYAVRKLY-SLPDEKLEQLFSAMADFDFRGVHMDSPSTLIRKAADIS 345
Query: 346 KALLRNPRLLARLIR 360
LLR P L L++
Sbjct: 346 FRLLRKPSLAFYLVK 360
>sp|Q57952|Y532_METJA HYPOTHETICAL PROTEIN MJ0532 PRECURSOR >gi|2128016|pir||D64366
hypothetical protein homolog MJ0532 - Methanococcus
jannaschii >gi|1591235|gb|AAB98523.1| (U67502)
bacteriochlorophyll synthase 43 kDa subunit (chlP)
[Methanococcus jannaschii]
Length = 391
Score = 103 bits (255), Expect = 3e-21
Identities = 102/388 (26%), Positives = 170/388 (43%), Gaps = 46/388 (11%)
Query: 3 YDALIIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKA--I 60
YD +++G GP G+ + A + ++ K G+ + E GL + +
Sbjct: 8 YDVVVVGAGPGGSMASYASAKNGAKTLLIEKSQEIGEPVRCAEAIPSIEEFGLKPEPEFV 67
Query: 61 LNAFKGAFFISKT-KVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGF-K 118
N KG S + K + + Q Y+V+RK+ ++ LA RA K GA + T +G +
Sbjct: 68 RNIIKGGILFSPSGKKVTVTQDKAQGYVVERKIFDKYLAIRAAKAGAKVAVKTTAIGLER 127
Query: 119 DG---KAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLR-----GWELEVLG 170
DG I++ L + IK K + ADGV S +A+ G K + + L +E+ +
Sbjct: 128 DGDYWNVIVEFLGEEYVIKTKVVIAADGVESNIAEYAGLKAKKKPLEICSCAEYEMTNVE 187
Query: 171 NFRREWVEVWVNKDINPEFFFWVAPINEEEARIG------TFGDVESLAKF----LKVRR 220
+ +E + ++ P + W+ P E A +G +E L +F L R
Sbjct: 188 LLDKNMMEFYFGNEVAPGGYVWIFP-KGETANVGLGVRDKKKKAIEYLEEFIENGLAKDR 246
Query: 221 INPSNVLEIK-SGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYC----ARAL 275
+ + +E K GA V G D + +VGDAA I P T GGI C
Sbjct: 247 LKDATPIEFKVGGAPVSGPIEKTYTDGLLVVGDAAGQISPLTGGGIYLAMDCGLIAGEVA 306
Query: 276 AKAI-LNG----NLAEYEKNCSWVKEQVKF---GLRIRKVFKSLTQKEIEEIFEVLGSED 327
+KAI LN L EYE+ W ++ ++ L+ RK+ + ++ E++ + E LG
Sbjct: 307 SKAIKLNDWSEETLKEYERR--WKEKHYEYLMSHLKYRKILEKMSDDELDALAEALGES- 363
Query: 328 ARKLIIEKADFDDHVKTAKALLRNPRLL 355
++ D VK + + + P LL
Sbjct: 364 -----LDGIDLKKFVK--RIITKKPSLL 384
>gi|11498075 bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
[Archaeoglobus fulgidus] >gi|7450113|pir||H69307
bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
homolog - Archaeoglobus fulgidus
>gi|2650164|gb|AAB90773.1| (AE001072)
bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
[Archaeoglobus fulgidus]
Length = 410
Score = 100 bits (247), Expect = 3e-20
Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 37/309 (11%)
Query: 3 YDALIIGGGPVGNYLASLLAGK-MSVAVVERKGAFGGKA-CTGIIGAENYESLGLPDKAI 60
YD +++G GP G+ A A + + V +VE++ G C I E+ E DK
Sbjct: 25 YDVVVVGAGPAGSMAAKTAAEQGLKVLLVEKRQEIGTPVRCAEGISRESIEKFFEVDKKW 84
Query: 61 LNA-FKGA--FFISKTKVFEIHRQVPQ--AYLVDRKVLERELAKRAIKRGADYYLATNFV 115
+ A GA + +KT++ Y+++RK+ +R +A+ A K GA+ Y+ T V
Sbjct: 85 IAAEVTGAKIYAPNKTEIVMSEEMAGNEVGYVLERKIFDRHVARLAAKAGAEVYVKTAMV 144
Query: 116 GF--KDGKAI--LQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGN 171
F KDGK L+ L +E++ K +GADGV SK+ ++ G + L+ E+E
Sbjct: 145 DFERKDGKVKVKLRRLGEDWEVETKILIGADGVESKIGRKAGII---KTLKLNEVESCAQ 201
Query: 172 FRREWVEV-------WVNKDINPEFFFWVAPINEEEARIGTFGDVESLAK---------F 215
+ +++ ++ +++ P + W+ P A +G G + +A+ F
Sbjct: 202 YLMTGLDIDESYTYFYLGRELAPGGYAWIFPKGNGSANVG-IGVLPKMAERTAKEYLDAF 260
Query: 216 LKVRRINPSNVLEIKSGAV-VLGWRSPWVKDNVALVGDAALHIKPTTAGGIV----FGSY 270
++ I ++E +GAV V G V DN+ L GDAA H P T GGI G Y
Sbjct: 261 IEKEGIE-GKIVEFVAGAVPVYGEIETAVADNIMLAGDAAYHADPITGGGIANALSAGYY 319
Query: 271 CARALAKAI 279
+ A+A+
Sbjct: 320 AGKVAAEAV 328
>pir||F70311 conserved hypothetical protein aq_121 - Aquifex aeolicus
>gi|2982862|gb|AAC06483.1| (AE000674) hypothetical
protein [Aquifex aeolicus]
Length = 342
Score = 92.1 bits (225), Expect = 1e-17
Identities = 90/305 (29%), Positives = 143/305 (46%), Gaps = 22/305 (7%)
Query: 1 MNYDALIIGGGPVGNYLASLLAGK-MSVAVVERKGAFGGKA-CTGIIGAE-NYESLGL-P 56
M YD I+G GP G+ A +LA K + V +++ + G C + + +YE P
Sbjct: 1 MKYDVAIVGAGPGGSTCAYVLAKKGVRVLLIDSRKEVGYPVQCAEFVPVQLSYEFPEFFP 60
Query: 57 DKAILNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVG 116
++ I K + T EI + +++ R+ ++ +AK A K GA T F+G
Sbjct: 61 EETIAQKVKD--MVHYTPWGEIVSMYSEGFILHREKWDKGIAKLAEKEGAHLRTKTKFIG 118
Query: 117 FKDGKAILQHLDSR--FEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFRR 174
F+ IL+ L+ R F++KA VGADG S VA+ G T+ ++ L
Sbjct: 119 FEGKYLILKDLNKREVFKVKADIVVGADGARSLVAKLTGEHTKEFLITAQYTLKLKKPLN 178
Query: 175 EWVEVWVNKDINPEFFFWVAPINEEEARIGTFGD-------VESLAKFLKVRR--INPSN 225
+ + + +D P + W+ P +E A +G D VE L KF+K + + P
Sbjct: 179 DLLIFF--RDYIPGGYGWIFP-KQELANVGVGVDLSYGVNVVEVLNKFVKEVKDFVEPEP 235
Query: 226 VLEIKSGAVV-LGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAILNGNL 284
+ G + G ++P+ + NV LVGDA P T GGI A+AIL G+L
Sbjct: 236 IYGRTGGFIPGEGIKNPF-RGNVLLVGDAGGFCHPITGGGIANAVITGSIAARAILEGDL 294
Query: 285 AEYEK 289
E+E+
Sbjct: 295 EEFEE 299
>pir||A69135 bacteriochlorophyll synthase 43 kDa subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621328|gb|AAB84783.1| (AE000813)
bacteriochlorophyll synthase 43 kDa subunit
[Methanobacterium thermoautotrophicum]
Length = 397
Score = 88.5 bits (216), Expect = 1e-16
Identities = 106/397 (26%), Positives = 176/397 (43%), Gaps = 54/397 (13%)
Query: 4 DALIIGGGPVGNYLASLLA-GKMSVAVVERKGAFGG-KACTGIIGAENYESLGLPDKA-- 59
D L+IG GP G+ A A G V ++++K G K C + ESLG+
Sbjct: 9 DVLVIGAGPAGSTAAKHAALGGADVLLIDKKSEIGAPKRCAEGVSIGGLESLGIEPNPRW 68
Query: 60 ILNAFKGAFFISK--TKVFEIHRQV--PQA-YLVDRKVLERELAKRAIKRGADYYLATNF 114
I G +S T V+ +V P+A Y+++RKV ++ +A A + G+ + T
Sbjct: 69 ITKKLDGVRMVSPNGTDVWLTSDKVELPEAGYILERKVFDKFMAMDAARAGSRIMVKTIA 128
Query: 115 VGFK---DGKAI-LQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLG 170
G + DG + + + +FEIKA+ + ADG S+VA+ G T R ++E
Sbjct: 129 TGMERTDDGYLVSAECMGEKFEIKARIVIAADGPESRVARWAGLNT---ATRPKDMESAA 185
Query: 171 NFRREWVEVWVNKDINPEFFFWVA---------PINEEEARIG-----TFGDVESLAKFL 216
F VE+ N I EF+F P ++ A +G T D + L
Sbjct: 186 QFEMVGVEMEDNNCI--EFYFGSVAPGGYALDIPEGDDIANVGLGVLSTETDKSAYEHLL 243
Query: 217 KVRRINPS--NVLEIK---SGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVF---- 267
+ P+ N ++ G V G V D++ +VGDAA + P T GGI+
Sbjct: 244 EFVESCPATRNAQPVELNIGGDPVGGMPKKLVADSLMVVGDAAGQVNPLTGGGIISGMKG 303
Query: 268 GSYCARALAKAILNGN-----LAEYEKNC-SWVKEQVKFGLRIRKVFKSLTQKEIEEIFE 321
G + A A+ G+ L EYE+ C + +++ L++++ +L+ E++ I E
Sbjct: 304 GMLAGQVAAAAVSEGDVTARRLGEYERLCREEIGDEISKYLKVKEYLLTLSDSELDSIAE 363
Query: 322 VLGSEDARKLIIEKADFDDHVKTAKALLRNPRLLARL 358
+ + EK + VK K + +P+ L +L
Sbjct: 364 AF-----QDVEFEKVSTTELVK--KLIKVSPKALLKL 393
>pir||H69096 bacteriochlorophyll synthase 43 kDa subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622850|gb|AAB86190.1| (AE000928)
bacteriochlorophyll synthase 43 kDa subunit
[Methanobacterium thermoautotrophicum]
Length = 381
Score = 86.6 bits (211), Expect = 4e-16
Identities = 96/367 (26%), Positives = 162/367 (43%), Gaps = 58/367 (15%)
Query: 6 LIIGGGPVGNYLASLLAGKM--SVAVVERKGAFGGKA-CTGIIGAENYESLGLPD----- 57
+++ GG V A+ A ++ SV ++ER G C G + ++S GL
Sbjct: 1 MVVIGGRVAGSTAAYHAARLGLSVLLLERNPEIGTPVQCAGGVSDSFFKSTGLKPLPEFT 60
Query: 58 -----KAILNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLAT 112
A +N GA +++ V + Y+++RK L++ LA RA + GAD L
Sbjct: 61 CTRIRAAAVNGPLGARIVTENPVV-------RGYILERKSLDKYLALRAAEAGADV-LTM 112
Query: 113 NFVG---FKDGKA---ILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTR---GEVLRG 163
+ G F++G + + D E++ + ADGV S +A++ G +T ++
Sbjct: 113 SIAGDLIFREGSVSGVVFRGPDGVQEVECGMVIAADGVQSSIARKAGLETGFRPADLCSC 172
Query: 164 WELEVLG-NFRREWVEVWVNKDINPEFFFWVAPINEEEARIGTF---------GDVESLA 213
+ EV G + E +E + P + WV P E A +G G + L
Sbjct: 173 VQYEVAGVDVDPETMEFYFGSRFAPSGYLWVFPKGEGRANVGLGIRRKSCSERGPLSYLN 232
Query: 214 KFLKVRRINPSNVLEIKSGAV-VLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCA 272
+F++ R +E +GAV V G D + +VGDAA + P T GGI + CA
Sbjct: 233 RFMEERGFKR---IEFNAGAVPVCGPIERTFTDGLLVVGDAAGQVDPLTGGGIHLAAECA 289
Query: 273 R----ALAKAILNGN-----LAEYEKNCSWVK---EQVKFGLRIRKVFKSLTQKEIEEIF 320
+ A+AI +G L+ YE W K + ++ L+ RK+ L +E++ +
Sbjct: 290 KIAGEVAAEAIESGRVDGRFLSRYEMR--WRKKIGKNLERSLKFRKILDGLGDEELDALL 347
Query: 321 EVLGSED 327
L +D
Sbjct: 348 RSLEGKD 354
>emb|CAC12613.1| (AL445067) geranylgeranyl reductase related protein [Thermoplasma
acidophilum]
Length = 375
Score = 86.2 bits (210), Expect = 5e-16
Identities = 86/375 (22%), Positives = 155/375 (40%), Gaps = 30/375 (8%)
Query: 4 DALIIGGGPVGNYLASLLA-GKMSVAVVERKGAFGGKA-CTGIIGAENYESLGLPDKAIL 61
D ++IG GP G++ A LA +V ++E G CTG++ + + K+I
Sbjct: 3 DVIVIGAGPSGSFAAYRLAKAGFTVDILEEHREVGKPVECTGLVSQRVLKYVRT--KSIA 60
Query: 62 NAFKGA-FFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFKDG 120
+GA F K I + P L R ++++A AI G+ + + +
Sbjct: 61 GTVRGANIFFPNGKSVHIEKDDPTIVLF-RDAFDKDVAAMAIGAGSGIRINARALSVTEH 119
Query: 121 KAILQHLDSRF-------EIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFR 173
H+ R+ E A+ +GADG+NS V +++ + V+ + ++
Sbjct: 120 D---DHVTVRYRENGSIKEEDARIVIGADGINSVVRRDVYGMRQKHVVSTLQYDMASGIE 176
Query: 174 RE-WVEVWVNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLK--VRRINPSNVLEIK 230
E V V++ FF W P + R+GT S ++ RR + L I
Sbjct: 177 DEDSVNVYLGSQYTHGFFGWAVP-GGDIVRVGTGSYKASARPYMDNLSRRFGDNRTLGIT 235
Query: 231 SGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFG--------SYCARALAKAILNG 282
+ + LVGDA +KP + GGI G +Y AL
Sbjct: 236 GAGIPIRMAERLSSRRTVLVGDAGGIVKPLSGGGIYTGIFSSDVAANYVVEALESDSSEA 295
Query: 283 NLAEYEKNC-SWVKEQVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDARKLIIEKADFD-D 340
+L +Y++ + + +++K I++++ ++ + I+ ++ +E +I D D
Sbjct: 296 SLRKYDREIRNTIGKELKKDAMIQRIYSRISDRSFNRIYSMISNEKIIDVINRSGDIDYP 355
Query: 341 HVKTAKALLRNPRLL 355
K LLRNP +L
Sbjct: 356 STVIIKVLLRNPGIL 370
>pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - common ice plant
>gi|3202030|gb|AAC19396.1| (AF069318) geranylgeranyl
hydrogenase [Mesembryanthemum crystallinum]
Length = 466
Score = 80.4 bits (195), Expect = 3e-14
Identities = 88/311 (28%), Positives = 134/311 (42%), Gaps = 30/311 (9%)
Query: 2 NYDALIIGGGPVGNYLASLLAGK-MSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAI 60
N +IGGGP G A LA + ++ERK K C G I LP I
Sbjct: 54 NLRVAVIGGGPAGGSAAETLAKNGIETFLIERK-LDNCKPCGGAIPLCMVGEFDLPLDII 112
Query: 61 LNAFKGAFFISKTKV-FEIHRQV-PQAYL--VDRKVLERELAKRAIKRGADY----YLAT 112
IS + V +I R + P Y+ V R+VL+ L +RA GA +L
Sbjct: 113 DRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDEYLRERAAGFGATVINGLFLKM 172
Query: 113 NFVGFKDGKAILQHLD---------SRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRG 163
+ KDG L + R ++ +GADG NS+VA+ IGA +
Sbjct: 173 DLPEGKDGSYKLHYTGYDAKSGGAGERRMLEVDAVIGADGANSRVAKAIGAGDYEYAIAF 232
Query: 164 WELEVLGNFRREW----VEVWVNKDINPEFFFWVAPINEEEA-RIGTFGDVESLAKFLKV 218
E + + + ++ E++V D++P+F+ WV P + A GT + KF
Sbjct: 233 QERIKIPDAKMQYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKSDIKKFQLA 292
Query: 219 RR------INPSNVLEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCA 272
R I ++ +++ + R V D VALVGDAA ++ + GI F +
Sbjct: 293 TRTRAMDKIQGGKIIRVEAHPIPEHPRPKRVLDRVALVGDAAGYVTKCSGEGIYFAAKSG 352
Query: 273 RALAKAILNGN 283
R A+AI+ G+
Sbjct: 353 RMCAEAIVEGS 363
>sp|P26172|BCHP_RHOCA GERANYLGERANYL HYDROGENASE >gi|79448|pir||S17818
bacteriochlorophyll synthase 43K chain - Rhodobacter
capsulatus >gi|46117|emb|CAA77534.1| (Z11165) 391 aa (43
kD) bacteriochlorophyll synthase subunit [Rhodobacter
capsulatus]
Length = 391
Score = 77.6 bits (188), Expect = 2e-13
Identities = 79/308 (25%), Positives = 136/308 (43%), Gaps = 25/308 (8%)
Query: 1 MNYDALIIGGGPVGNYLA-SLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKA 59
M YDA ++GGGP G+ A + + VA+++R G K C G I +PD
Sbjct: 1 MKYDAFVVGGGPAGSTAAWDMARAGLKVALLDRAGRI--KPCGGAIPPRLIRDFDIPDHL 58
Query: 60 ILNAFKGAFFISKTKVF-EIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGFK 118
++ A IS T F +I + +VDR+ + L +RA K GA+ T +
Sbjct: 59 LVAKITSARMISPTGRFVDIPIENGFVGMVDREDYDEWLRERAGKAGAERLTGTWLRIER 118
Query: 119 D-GKAILQHLD----SRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWEL----EVL 169
D GK ++ D + + + +GADG NS+V E+ A V E+ +
Sbjct: 119 DSGKTVVVWRDKVTGEEMKAETRVVIGADGANSQVRNEVPATKIPLVFAYHEIIKAPTTV 178
Query: 170 GNFRREWVEVWVNKDINPEFFFWVAPINEEEARIGTFGDVESLA------KFLKVRRINP 223
N+ +V+ + I+P+F+ WV P + + A IG ++ ++ ++ ++
Sbjct: 179 ANYDPTRCDVYYDGRISPDFYGWVFP-HGKTASIGMGTELPDVSLKDCTTLLRQMSGLDK 237
Query: 224 SNVLEIKSGAVVLGWRSPWVK-DNVALVGDAALHIKPTTAGGIVF----GSYCARALAKA 278
+ + + L W +V L GDAA + P++ GI + G Y A A
Sbjct: 238 EETIRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAF 297
Query: 279 ILNGNLAE 286
+ +G A+
Sbjct: 298 LKSGKPAD 305
>emb|CAA07683.1| (AJ007789) geranylgeranyl reductase [Nicotiana tabacum]
Length = 464
Score = 74.9 bits (181), Expect = 1e-12
Identities = 82/311 (26%), Positives = 134/311 (42%), Gaps = 30/311 (9%)
Query: 2 NYDALIIGGGPVGNYLASLLA-GKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAI 60
N ++GGGP G A LA G + ++ERK K C G I LP I
Sbjct: 52 NLRVAVVGGGPAGGAAAETLAKGGIETFLIERK-MDNCKPCGGAIPLCMVGEFDLPLDII 110
Query: 61 LNAFKGAFFISKTKVFEIHRQV--PQAYL--VDRKVLERELAKRAIKRGADY----YLAT 112
IS + V Q P Y+ V R+VL+ L RA + GA +L
Sbjct: 111 DRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKM 170
Query: 113 NFVGFKDGKAILQHL--DSRFE-------IKAKYYVGADGVNSKVAQEIGAKTRGEVLRG 163
+ + +L + DS+ ++ +GADG NS+VA+ I A +
Sbjct: 171 DMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAKSINAGDYEYAIAF 230
Query: 164 WELEVLGNFRREW----VEVWVNKDINPEFFFWVAPINEEEA-RIGTFGDVESLAKFLKV 218
E + + + ++ E++V D++P+F+ WV P + A GT + KF
Sbjct: 231 QERIKISDDKMKYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQLA 290
Query: 219 RRINPSN------VLEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCA 272
R+ + ++ +++ + R ++D VALVGDAA ++ + GI F +
Sbjct: 291 TRLRADSKITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSG 350
Query: 273 RALAKAILNGN 283
R A+AI+ G+
Sbjct: 351 RMCAEAIVEGS 361
>pir||B70310 conserved hypothetical protein aq_104 - Aquifex aeolicus
>gi|2982849|gb|AAC06471.1| (AE000673) hypothetical
protein [Aquifex aeolicus]
Length = 370
Score = 74.5 bits (180), Expect = 2e-12
Identities = 83/362 (22%), Positives = 153/362 (41%), Gaps = 32/362 (8%)
Query: 3 YDALIIGGGPVGNYLASLLAGK-MSVAVVERKGAFGGKACTGIIGAENYESLGLPDKA-I 60
+D +++G GP G+ A L+ K + V ++ERK K C G + + L K+ +
Sbjct: 4 FDVVVVGAGPSGSSAARYLSEKGLRVLLMERKKLPRFKLCGGALSGRFSKYLPQDFKSKV 63
Query: 61 LNAFKGAFFISKTKVFEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLATNFVGF--K 118
LN + + ++ + AY++DR + LA++A+++G + T + +
Sbjct: 64 LNVIHKGYLGFRGDKHKLKEREEVAYIIDRADFDHFLAQKAMEKGCELREETELLDLWEE 123
Query: 119 DGKAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWELEVLGNFRREWVE 178
GK IL ++ ++ + +GADG +SKVA+ +G K + + R +EVL ++
Sbjct: 124 KGKIILD--TTKGKVSCDFLIGADGFHSKVAKFLGFK-KEKYYR--SVEVLAEGEMDFNS 178
Query: 179 VWVNKDINPEFFFWVAPINEEEARIGTFG-DVESLAKFLKVRRINPSNVLEIKSGAVVLG 237
V + + + WV P + IG + E+L + LK I ++++K
Sbjct: 179 VVIELGLVKRGYLWVFP-KGNKLNIGVASTEKENLLEVLK-DYIKRQKIVKVKKIYKPKS 236
Query: 238 WRSPWV---------KDNVALVGDAALHIKPTTAGGIVFGSYCARALAKAILNG------ 282
W P+ + + LVGDA + P GI +G AIL
Sbjct: 237 WFIPFAEGSEELHTGRGRILLVGDAGNFVDPLLGEGIYYGYLSGLLAGDAILENPQNPEK 296
Query: 283 ----NLAEYEKNCSWVKEQVKFGLRIRKV-FKSLTQKEIEEIFEVLGSEDARKLIIEKAD 337
+ E K ++ + K R ++V +K +E E L + + +K
Sbjct: 297 TYRKKVKELAKEFTYAGKIAKLAYRFQRVAYKMGGGTSLERYMEFLKGHTTYEEMYKKGW 356
Query: 338 FD 339
D
Sbjct: 357 LD 358
>dbj|BAA90346.1| (AP001080) Similar to geranylgeranyl hydrogenase. (AF069318) [Oryza
sativa] >gi|7242920|dbj|BAA92518.1| (AP001383) Similar
to geranylgeranyl hydrogenase. (AF069318) [Oryza sativa]
Length = 452
Score = 73.0 bits (176), Expect = 5e-12
Identities = 88/375 (23%), Positives = 157/375 (41%), Gaps = 51/375 (13%)
Query: 7 IIGGGPVGNYLASLLAGKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAILNAFKG 66
++GGGP G A LA + A + + G K C G I + +P +
Sbjct: 37 VVGGGPAGASAAEALASAGAQAFLLERNPSGAKPCGGAIPLCMLDEFAIPRDLVDRRVTR 96
Query: 67 AFFISKTKVF-EIHRQVPQAY---LVDRKVLERELAKRAIKRGA---------------- 106
+S + + + R +P ++ R+VL+ L +RA GA
Sbjct: 97 MRVLSPSNLAADFSRALPPGAHIPMLRREVLDSFLRRRAADAGATLVPGLVTSLSLPADP 156
Query: 107 --DYYLATNFVGFKDGKAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGW 164
D YL G + SR ++ +GADG NS+VA+E+GA +
Sbjct: 157 ATDPYLVHYISSDSGGPS-----SSRCVLEVDAVIGADGANSRVAREVGAGDYSTAIAFQ 211
Query: 165 ELEVLGN----FRREWVEVWVNKDINPEFFFWVAPINEEEA----RIGTFGDVESLAKFL 216
E L + + + E++V D++P+F+ WV P + A + +++ L +
Sbjct: 212 ERIRLPDEAMAYYDDLAEMYVGGDVSPDFYGWVFPKCDHVAVGTGTVAAKPEIKRLQSGI 271
Query: 217 KVR---RINPSNVLEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVF----GS 269
+ R ++ V+ +++ + R V VALVGDAA ++ + GI F G
Sbjct: 272 RARAAGKVAGGRVVRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTRCSGEGIYFAARSGR 331
Query: 270 YCARALA-KAILNGNLAEYEKNCSWVKEQVKFGLRIRKVFKSLTQKEIEEIFEVLGSEDA 328
C RA+A + L G + E +++ ++ R F+ L ++ +F G
Sbjct: 332 LCGRAMADEWRLTGAVTEAGIRAGYLR---RWDDEFRPTFRFLDL--LQRVF--YGGNAG 384
Query: 329 RKLIIEKADFDDHVK 343
R+ ++E D+HV+
Sbjct: 385 REALVEMC-ADEHVQ 398
>emb|CAA74372.1| (Y14044) geranylgeranyl reductase [Arabidopsis thaliana]
Length = 472
Score = 71.4 bits (172), Expect = 2e-11
Identities = 83/310 (26%), Positives = 134/310 (42%), Gaps = 38/310 (12%)
Query: 7 IIGGGPVGNYLASLLA-GKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAILNAFK 65
+IGGGP G A LA G + ++ERK K C G I LP I
Sbjct: 65 VIGGGPAGGAAAETLAQGGIETILIERK-MDNCKPCGGAIPLCMVGEFNLPLDIIDRRVT 123
Query: 66 GAFFISKTKV-FEIHRQVPQAY---LVDRKVLERELAKRAIKRGA--------------- 106
IS + + +I R + + +V R+VL+ L +RA K GA
Sbjct: 124 KMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPEN 183
Query: 107 -DYYLATNFVGFKDGKAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWE 165
D ++ + DGK E+ A +GADG NS+VA+ I A + E
Sbjct: 184 WDSPYTLHYTEY-DGKTGATGTKKTMEVDA--VIGADGANSRVAKSIDAGDYDYAIAFQE 240
Query: 166 LEVLGN----FRREWVEVWVNKDINPEFFFWVAPINEEEARIGTF-----GDVESLAKFL 216
+ + + + E++V D++P+F+ WV P + A +GT GD++
Sbjct: 241 RIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVA-VGTGTVTHKGDIKKFQLAT 299
Query: 217 KVR---RINPSNVLEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCAR 273
+ R +I ++ +++ + R + VALVGDAA ++ + GI F + R
Sbjct: 300 RNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGR 359
Query: 274 ALAKAILNGN 283
A+AI+ G+
Sbjct: 360 MCAEAIVEGS 369
>gb|AAF15919.1|AC011765_15 (AC011765) geranylgeranyl reductase; 47568-49165 [Arabidopsis
thaliana]
Length = 467
Score = 71.4 bits (172), Expect = 2e-11
Identities = 83/310 (26%), Positives = 134/310 (42%), Gaps = 38/310 (12%)
Query: 7 IIGGGPVGNYLASLLA-GKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAILNAFK 65
+IGGGP G A LA G + ++ERK K C G I LP I
Sbjct: 60 VIGGGPAGGAAAETLAQGGIETILIERK-MDNCKPCGGAIPLCMVGEFNLPLDIIDRRVT 118
Query: 66 GAFFISKTKV-FEIHRQVPQAY---LVDRKVLERELAKRAIKRGA--------------- 106
IS + + +I R + + +V R+VL+ L +RA K GA
Sbjct: 119 KMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPEN 178
Query: 107 -DYYLATNFVGFKDGKAILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRGWE 165
D ++ + DGK E+ A +GADG NS+VA+ I A + E
Sbjct: 179 WDSPYTLHYTEY-DGKTGATGTKKTMEVDA--VIGADGANSRVAKSIDAGDYDYAIAFQE 235
Query: 166 LEVLGN----FRREWVEVWVNKDINPEFFFWVAPINEEEARIGTF-----GDVESLAKFL 216
+ + + + E++V D++P+F+ WV P + A +GT GD++
Sbjct: 236 RIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVA-VGTGTVTHKGDIKKFQLAT 294
Query: 217 KVR---RINPSNVLEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYCAR 273
+ R +I ++ +++ + R + VALVGDAA ++ + GI F + R
Sbjct: 295 RNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGR 354
Query: 274 ALAKAILNGN 283
A+AI+ G+
Sbjct: 355 MCAEAIVEGS 364
>gb|AAD28640.1|AAD28640 (AF068686) geranylgeranyl hydrogenase [Glycine max]
Length = 462
Score = 71.0 bits (171), Expect = 2e-11
Identities = 82/312 (26%), Positives = 136/312 (43%), Gaps = 32/312 (10%)
Query: 2 NYDALIIGGGPVGNYLASLLA-GKMSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAI 60
N ++GGGP G A LA G + ++ERK K C G I LP I
Sbjct: 50 NLRVAVVGGGPAGGAAAETLAKGGVETFLIERK-MDNCKPCGGAIPLCMVGEFDLPLDII 108
Query: 61 LNAFKGAFFISKTKV-FEIHRQV-PQAYL--VDRKVLERELAKRAIKRGADY----YLAT 112
IS + V +I R + P Y+ V R+VL+ L RA + GA+ +L
Sbjct: 109 DRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKEYGANVINGLFLKM 168
Query: 113 NFVGFKDGKAILQHLD---------SRFEIKAKYYVGADGVNSKVAQEIGAKTRGEVLRG 163
+ K+ +L + + ++ +GADG NS+VA+ I A +
Sbjct: 169 DIPKDKNSPYVLHYSSYDGKTNGAGEKRTLEVDAVIGADGANSRVAKSIDAGDYEYAIAF 228
Query: 164 WELEVLGN----FRREWVEVWVNKDINPEFFFWVAPINEEEARIGTF-----GDVESLAK 214
E + + + E++V D++P+F+ WV P + A +GT GD++
Sbjct: 229 QERVKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVA-VGTGTVTHKGDIKKFQL 287
Query: 215 FLKVR---RINPSNVLEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGGIVFGSYC 271
+ R +I ++ +++ + R + VALVGDAA ++ + GI F +
Sbjct: 288 ATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLLGRVALVGDAAGYVTKCSGEGIYFAAKS 347
Query: 272 ARALAKAILNGN 283
R A+AI+ G+
Sbjct: 348 GRMCAEAIVEGS 359
>pir||T50913 geranylgeranyl bacteriochlorophyll reductase [imported] -
Rubrivivax gelatinosus >gi|7416817|dbj|BAA94066.1|
(AB034704) geranylgeranyl bacteriochlorophyll reductase
[Rubrivivax gelatinosus]
Length = 400
Score = 69.9 bits (168), Expect = 5e-11
Identities = 90/367 (24%), Positives = 158/367 (42%), Gaps = 39/367 (10%)
Query: 3 YDALIIGGGPVGNYLASLLAGK-MSVAVVERKGAFGGKACTGIIGAENYESLGLPDKAIL 61
+D +++GGGP G A+ +A + SV +++R G K C G I G+PD+ I+
Sbjct: 6 FDVVVVGGGPAGATAATEIARQGRSVLLLDRAGRI--KPCGGAIPPRAIRDFGIPDELIV 63
Query: 62 NAFKGAFFISKTKV-FEIHRQVPQAYLVDRKVLERELAKRAIKRGADYYLAT--NFVGFK 118
A IS T V +IH + LVDR+ + L +RA + GA T
Sbjct: 64 AKALCARMISPTDVKVDIHIENGYVGLVDREQFDEWLRERARQCGAVRRTGTFERIDRDA 123
Query: 119 DGKAILQHL---------DSRFEIKAKYYVGADGVNSKVA-QEIGAKTRGEVLRGWELEV 168
DG AI+++ ++A+ +GADG S+VA Q+I E + + E+
Sbjct: 124 DGCAIVRYRPHEKGERGEGQEAAVRARAIIGADGARSEVARQQISCAHEVEYVFAYH-EI 182
Query: 169 L-------GNFRREWVEVWVNKDINPEFFFWVAPINEEEARIGT------FGDVESLAKF 215
+ ++ +V+ I+P+F+ WV P + + +GT F + AK
Sbjct: 183 IEAPEPGHPDYDPSRCDVYYRGTISPDFYGWVFP-HGKTMSVGTGSADKGFSLRNATAKL 241
Query: 216 LKVRRINPSNVLEIKSGAVVLGWRSPWVKD-NVALVGDAALHIKPTTAGGIVF----GSY 270
+ + + + + L W +V L GDA+ + P + GI + G +
Sbjct: 242 REDAGLANCKTIRREGAPIPLKPLRCWDNGRDVVLAGDASGVVAPASGEGIYYALAGGRF 301
Query: 271 CARALAKAILNGN---LAEYEKNCSWVKEQVKFGLRIRKVFKSLTQKEIEEIFEVLGSED 327
A A+ + + G+ LA +N +V + L I + F + K E + +D
Sbjct: 302 AAEAVLEMLRTGDAKALAGARRNFMREHGRVFWILGILQRFWYSSDKRRERFVSICKDKD 361
Query: 328 ARKLIIE 334
++L +
Sbjct: 362 VQQLTFD 368
>emb|CAC11656.1| (AL445064) geranylgeranyl reductase related protein [Thermoplasma
acidophilum]
Length = 389
Score = 69.5 bits (167), Expect = 6e-11
Identities = 85/379 (22%), Positives = 155/379 (40%), Gaps = 52/379 (13%)
Query: 7 IIGGGPVGNYLASLLAGK-MSVAVVERKGAFGGKACTG---IIGAENYESLGLPDKAILN 62
++GGGP G+ A A + ++E++ G G G N + I N
Sbjct: 1 MVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIAN 60
Query: 63 AFKGAFFISKTKVFEIHRQVPQA-----YLVDRKVLERELAKRAIKRGADYYLATNFVGF 117
KGA ++ I Q +A Y+++R ++ LA A K GAD ++ + +G
Sbjct: 61 EVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGV 120
Query: 118 --KDGK---AILQHLDSRFEIKAKYYVGADGVNSKVAQEIGAKT----RGEVLRGWELEV 168
++GK A ++H + +++AK + ADG S+ + G K+ R +++ + +
Sbjct: 121 IKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRM 180
Query: 169 LG-NFRREWVEVWVNKDINPEFFFWVAPINEEEARIGTFGDVESLAKFLKVRRI------ 221
+ + ++ + ++ I P + WV P E A +G + + +++
Sbjct: 181 INVDVDPDYTDFYLGS-IAPAGYIWVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFIE 239
Query: 222 ------NPSNVLEIKSGAVVLGWRSPWVKDNVALVGDAALHIKPTTAGG----IVFGSYC 271
++ + G V + P + LVGDAA I P T GG IV G Y
Sbjct: 240 NHPGLKKGQDIQLVTGGVSVSKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYA 299
Query: 272 ARALAKAILNGN-----LAEYEKNC----------SWVKEQVKFGLRIRKVFKSLTQKEI 316
A+ +AI + + + +YEK +WV ++ K + L
Sbjct: 300 AQVTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNWVAKE-KLAMLSDDTLDKLVDIVS 358
Query: 317 EEIFEVLGSEDARKLIIEK 335
E++ + E K I EK
Sbjct: 359 EQVLTTISVEAILKAIAEK 377
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136011127
Number of Sequences: 2977
Number of extensions: 5669434
Number of successful extensions: 14068
Number of sequences better than 1.0e-10: 23
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 14004
Number of HSP's gapped (non-prelim): 23
length of query: 370
length of database: 189,106,746
effective HSP length: 55
effective length of query: 315
effective length of database: 156,189,961
effective search space: 49199837715
effective search space used: 49199837715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)