BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1060 (PAB1060) DE:Hypothetical protein
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75009 hypothetical protein PAB1060 - Pyrococcus abyssi (st...   224  2e-58
pir||H71142 hypothetical protein PH0355 - Pyrococcus horikoshii ...   201  2e-51
gb|AAF01598.1|AC009895_19 (AC009895) unknown protein [Arabidopsi...    91  3e-18
pir||E75006 hypothetical protein PAB1310 - Pyrococcus abyssi (st...    69  1e-11
pir||H71155 hypothetical protein PH0447 - Pyrococcus horikoshii ...    66  1e-10

>pir||G75009 hypothetical protein PAB1060 - Pyrococcus abyssi (strain Orsay)
           >gi|5459031|emb|CAB50517.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score =  224 bits (565), Expect = 2e-58
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MEWEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSF 60
           MEWEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSF
Sbjct: 1   MEWEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSF 60

Query: 61  KEMLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIEIEPIEEG 111
           KEMLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIEIEPIEEG
Sbjct: 61  KEMLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIEIEPIEEG 111


>pir||H71142 hypothetical protein PH0355 - Pyrococcus horikoshii
           >gi|3256746|dbj|BAA29429.1| (AP000002) 109aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 109
           
 Score =  201 bits (507), Expect = 2e-51
 Identities = 96/109 (88%), Positives = 104/109 (95%)

Query: 1   MEWEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSF 60
           M+WEMGLQEEYIELIK G KKIEGRLYDEKRR+IKPGDII+FEGGKLKV+VK +RVY SF
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSF 60

Query: 61  KEMLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIEIEPIE 109
           KEMLEKEGIENVLPGV S+EEGVK+YR+FYDEEREKKYGVVAIEIEPIE
Sbjct: 61  KEMLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYGVVAIEIEPIE 109


>gb|AAF01598.1|AC009895_19 (AC009895) unknown protein [Arabidopsis thaliana]
           Length = 244
           
 Score = 91.3 bits (223), Expect = 3e-18
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%)

Query: 1   MEWEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSF 60
           + +E+ +QE Y   +K GLK +EGR       +I  GD ++F    L + V+ +  Y SF
Sbjct: 105 VNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGDFLLFNKCLL-LEVQDVHRYTSF 163

Query: 61  KEMLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIEI 105
            EML+ EG+  VLPGV S+EEGV++YR FY EE+E+  GVVAI +
Sbjct: 164 SEMLKVEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNGVVAIRV 208


>pir||E75006 hypothetical protein PAB1310 - Pyrococcus abyssi (strain Orsay)
           >gi|5459005|emb|CAB50491.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 113
           
 Score = 69.5 bits (167), Expect = 1e-11
 Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 3   WEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSFKE 62
           + + L++EY+E++K G KKIE R+   + R IK GD I+F    +   V  ++ Y++F++
Sbjct: 4   YRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIFND-MIPAEVIDVKRYETFRQ 62

Query: 63  MLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIE 104
           +L +E IE + P   S E  ++ +   Y + +E +YGV+AI+
Sbjct: 63  VLREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIK 104


>pir||H71155 hypothetical protein PH0447 - Pyrococcus horikoshii
           >gi|3256850|dbj|BAA29533.1| (AP000002) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score = 66.3 bits (159), Expect = 1e-10
 Identities = 31/104 (29%), Positives = 65/104 (61%), Gaps = 1/104 (0%)

Query: 3   WEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSFKE 62
           + + L++EY+E++K G K+IE R+   + + +K GD I+F   ++   V  ++ Y++F++
Sbjct: 5   YRLYLRDEYLEMVKSGKKRIEVRVAYPQLKGMKRGDKIIFND-EVPAEVIEVKHYETFRQ 63

Query: 63  MLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIEIE 106
           +L +E I+ + P   S E  ++ +   Y + +E +YGV+AI+ +
Sbjct: 64  VLREEPIDKIFPDEPSFERALRRFHNLYPKWKENRYGVIAIKFK 107


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.142    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42965817
Number of Sequences: 2977
Number of extensions: 1698480
Number of successful extensions: 4845
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4839
Number of HSP's gapped (non-prelim): 5
length of query: 111
length of database: 189,106,746
effective HSP length: 53
effective length of query: 58
effective length of database: 157,386,935
effective search space: 9128442230
effective search space used: 9128442230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 159 (66.3 bits)