BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1061 (PAB1061) DE:Hypothetical protein
(387 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75009 hypothetical protein PAB1061 - Pyrococcus abyssi (st... 775 0.0
pir||G71142 hypothetical protein PH0354 - Pyrococcus horikoshii ... 661 0.0
pir||H64463 hypothetical protein MJ1313 - Methanococcus jannasch... 416 e-115
pir||D69056 conserved hypothetical protein MTH1421 - Methanobact... 342 5e-93
gi|11499914 conserved hypothetical protein [Archaeoglobus fulgid... 277 1e-73
pir||B72514 hypothetical protein APE2087 - Aeropyrum pernix (str... 228 1e-58
pir||A83489 hypothetical protein PA1259 [imported] - Pseudomonas... 173 4e-42
>pir||H75009 hypothetical protein PAB1061 - Pyrococcus abyssi (strain Orsay)
>gi|5459032|emb|CAB50518.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 775 bits (1979), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MNLYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAG 60
MNLYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAG
Sbjct: 1 MNLYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAG 60
Query: 61 LSFIRDLAEMGAKVSVYTTLNPPGIGDEEFMEKQREVIEIYRKMGVDVTSTCTPYYGANL 120
LSFIRDLAEMGAKVSVYTTLNPPGIGDEEFMEKQREVIEIYRKMGVDVTSTCTPYYGANL
Sbjct: 61 LSFIRDLAEMGAKVSVYTTLNPPGIGDEEFMEKQREVIEIYRKMGVDVTSTCTPYYGANL 120
Query: 121 PKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEENRKATHIV 180
PKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEENRKATHIV
Sbjct: 121 PKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEENRKATHIV 180
Query: 181 TVKAELKDETDYSLLGYKVGEIVENGIPYFKNLSPSTDELKALGASMAASGGVALYHVEE 240
TVKAELKDETDYSLLGYKVGEIVENGIPYFKNLSPSTDELKALGASMAASGGVALYHVEE
Sbjct: 181 TVKAELKDETDYSLLGYKVGEIVENGIPYFKNLSPSTDELKALGASMAASGGVALYHVEE 240
Query: 241 HTPEWRTSIVDKVEKVEIEDKDIKEVQENFNAEWSEVDFILLGCPHASLKEVKKIADVIR 300
HTPEWRTSIVDKVEKVEIEDKDIKEVQENFNAEWSEVDFILLGCPHASLKEVKKIADVIR
Sbjct: 241 HTPEWRTSIVDKVEKVEIEDKDIKEVQENFNAEWSEVDFILLGCPHASLKEVKKIADVIR 300
Query: 301 MRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDACLVVSPIKKWYSGVATNS 360
MRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDACLVVSPIKKWYSGVATNS
Sbjct: 301 MRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDACLVVSPIKKWYSGVATNS 360
Query: 361 GKAAFYFRSFGLKVKLDKLENLILGAP 387
GKAAFYFRSFGLKVKLDKLENLILGAP
Sbjct: 361 GKAAFYFRSFGLKVKLDKLENLILGAP 387
>pir||G71142 hypothetical protein PH0354 - Pyrococcus horikoshii
>gi|3256745|dbj|BAA29428.1| (AP000002) 388aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 388
Score = 661 bits (1686), Expect = 0.0
Identities = 313/387 (80%), Positives = 357/387 (91%)
Query: 1 MNLYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAG 60
+ LYLTKEEEL LSGEYGPALQKAMEILVALGDLYGAD+LIPIKSAQIAGVSYKNLGEAG
Sbjct: 2 ITLYLTKEEELALSGEYGPALQKAMEILVALGDLYGADRLIPIKSAQIAGVSYKNLGEAG 61
Query: 61 LSFIRDLAEMGAKVSVYTTLNPPGIGDEEFMEKQREVIEIYRKMGVDVTSTCTPYYGANL 120
L F+RDL EMGAKVSVYTTLNPPGIG+E+FMEKQ E+I +YR+MG++VTSTCTPYYGANL
Sbjct: 62 LEFLRDLVEMGAKVSVYTTLNPPGIGNEDFMEKQEEIISLYREMGIEVTSTCTPYYGANL 121
Query: 121 PKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEENRKATHIV 180
PKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHL+ENRKATH V
Sbjct: 122 PKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLDENRKATHFV 181
Query: 181 TVKAELKDETDYSLLGYKVGEIVENGIPYFKNLSPSTDELKALGASMAASGGVALYHVEE 240
V E K+E +YSLLGY+VGEIVENGIPYF NL+PS DELKALGASMAASGGVALYHVE+
Sbjct: 182 KVTFEPKNEVEYSLLGYRVGEIVENGIPYFSNLTPSLDELKALGASMAASGGVALYHVEK 241
Query: 241 HTPEWRTSIVDKVEKVEIEDKDIKEVQENFNAEWSEVDFILLGCPHASLKEVKKIADVIR 300
HTPEWR +I DKVEK+ I+ K++++V+E FNA+W EVDFILLGCPHASLKEVK IA++++
Sbjct: 242 HTPEWRGAINDKVEKITIDSKEVEDVKERFNADWGEVDFILLGCPHASLKEVKNIAELLK 301
Query: 301 MRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDACLVVSPIKKWYSGVATNS 360
MR PL++PLY+T+SR VKAL+DFLGYTE+IERYNG+L+ D CLVVSP+K+WYSGVATNS
Sbjct: 302 MRGKPLRIPLYITISRSVKALADFLGYTEVIERYNGKLLQDVCLVVSPVKEWYSGVATNS 361
Query: 361 GKAAFYFRSFGLKVKLDKLENLILGAP 387
GKAAFYF+SFGL VKL+ +E +I+ AP
Sbjct: 362 GKAAFYFKSFGLNVKLESVEKIIMEAP 388
>pir||H64463 hypothetical protein MJ1313 - Methanococcus jannaschii
>gi|1591952|gb|AAB99320.1| (U67571) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 403
Score = 416 bits (1057), Expect = e-115
Identities = 217/404 (53%), Positives = 286/404 (70%), Gaps = 23/404 (5%)
Query: 3 LYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAGLS 62
+YLTKEEE IL GEYG L++ M +LV+LGD+YGADKLIPI SAQI+GVSYK + + GL
Sbjct: 1 MYLTKEEEKILDGEYGEVLRRCMNLLVSLGDIYGADKLIPISSAQISGVSYKTIKDIGLE 60
Query: 63 FIRDLAEMGAKVSVYTTLNPPGIG---------DEEFMEKQREVIEIYRKMGVDVTSTCT 113
F+ D A+ KV VY TLNP G+ DE+F +KQ +IE ++KM V+++ TCT
Sbjct: 61 FLEDFAKEDVKVKVYATLNPAGMDLDIWRELGIDEKFAKKQLRIIEAFKKMEVEISCTCT 120
Query: 114 PYYGANLPKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEEN 173
PY NLP+FG+H++W+ESSAVSFANSVLGA+TNREGGPS+LAAAI+GKTP YG HL+EN
Sbjct: 121 PYLTGNLPRFGEHISWAESSAVSFANSVLGAKTNREGGPSALAAAIIGKTPYYGYHLDEN 180
Query: 174 RKATHIVTVKAEL-----KDETDYSLLGYKVGEIVENGIPYFKN---LSPSTDELKALGA 225
RK THI+ + +L E+ Y LGY VG+IV+NGIPYF+N L+P+ D LK+LGA
Sbjct: 181 RKTTHIIELDGQLISNFKYGESFYGALGYLVGKIVKNGIPYFENLYKLNPNNDNLKSLGA 240
Query: 226 SMAASGGVALYHVEEHTPEWRTSIV--DKVEKVEIEDKDIKEVQENFNAEWSEVDFILLG 283
+MAASGG+ALYH + T E R V DK+EK+ I ++IKE E N E D I +G
Sbjct: 241 AMAASGGIALYHAKNLTAECRVKEVVNDKIEKISIGVEEIKEAYEKLNTTNEEPDLICIG 300
Query: 284 CPHASLKEVKKIADVIRMRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDAC 343
CPH SL E+KKIA++++ ++ L L+V S +KA++D +GYT+IIE+ G+++ D C
Sbjct: 301 CPHCSLMEIKKIAELLKNKK--LNADLWVCCSLHIKAIADRMGYTKIIEKAGGKVVKDTC 358
Query: 344 LVVSPIKK-WYSGVATNSGKAAFYFRSF-GLKVKLDKLENLILG 385
+VVSPI+ Y VATNSGKAA Y SF +V +E L+ G
Sbjct: 359 MVVSPIEDLGYKRVATNSGKAAVYLPSFCKSEVIFGDIEELLKG 402
>pir||D69056 conserved hypothetical protein MTH1421 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622534|gb|AAB85898.1| (AE000904) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 399
Score = 342 bits (867), Expect = 5e-93
Identities = 185/394 (46%), Positives = 252/394 (63%), Gaps = 16/394 (4%)
Query: 3 LYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAGLS 62
+YL + EE + GE+G +Q++MEILVALGD+YGA++++ I SAQ++GVSYK +G+AGL
Sbjct: 7 VYLDRTEERMYDGEFGETVQQSMEILVALGDIYGAERMVDISSAQVSGVSYKTIGDAGLE 66
Query: 63 FIRDLAEMGAKVSVYTTLNPPGIG---------DEEFMEKQREVIEIYRKMGVDVTSTCT 113
++ DL GA V V +TLNP G+ EEF +Q ++E Y M V T TCT
Sbjct: 67 YLEDLRARGAGVKVASTLNPAGMDLQRWREMGFSEEFARRQIRIVEAYSAMDVMNTCTCT 126
Query: 114 PYYGANLPKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEEN 173
PY N+P G H+AWSESSAVS+ANSVLGARTNREGGP +LAAAI GKTP YG HL+EN
Sbjct: 127 PYLIGNVPLRGSHVAWSESSAVSYANSVLGARTNREGGPGALAAAICGKTPEYGYHLQEN 186
Query: 174 RKATHIVTVKAELKDETDYSLLGYKVGEIVENGIPYFKNLS-PSTDELKALGASMAASGG 232
R+AT V V+ EL +DY LGY G+I G+PYF PS D+LKALGA+MA+SG
Sbjct: 187 RRATLRVDVECELSG-SDYGALGYITGKIAGEGVPYFTFTGHPSADDLKALGAAMASSGA 245
Query: 233 VALYHVEEHTPEWRTSIVDKV-EKVEIEDKDIKEVQENFNAEWSEVDFILLGCPHASLKE 291
VALYHV+ TPE+ + D+ + + ++ DI E +E + + D I LGCPH SL E
Sbjct: 246 VALYHVDGVTPEYMEASPDEAGDSITVDAGDILEAREELSTTDDDPDLICLGCPHCSLDE 305
Query: 292 VKKIADVIRMRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDACLVVSPIKK 351
+++IA +R + L+V S + + + +GYT++IE G ++ D C+VV+P++
Sbjct: 306 IRRIASFLRKNKP--ACDLWVCTSAAIGSAASRMGYTDVIEAAGGMVVSDTCMVVAPVED 363
Query: 352 -WYSGVATNSGKAAFYFRSF-GLKVKLDKLENLI 383
Y + +S KAA Y GL D NLI
Sbjct: 364 LGYEVLGVDSAKAANYVPGMCGLDAVYDDWMNLI 397
>gi|11499914 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430419|pir||E69541 conserved hypothetical protein
AF2333 - Archaeoglobus fulgidus
>gi|2648180|gb|AAB88919.1| (AE000943) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 380
Score = 277 bits (702), Expect = 1e-73
Identities = 155/375 (41%), Positives = 232/375 (61%), Gaps = 35/375 (9%)
Query: 2 NLYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAGL 61
++YLTK+EE +L + ++K MEILVA G+ A++L+ +KSA I+GVSY N+GEAGL
Sbjct: 8 SMYLTKDEERLLESD-NDTIRKCMEILVAEGEANEAERLVEVKSAHISGVSYDNIGEAGL 66
Query: 62 SFIRDLAEMGAKVSVYTTLNPPGIG---------DEEFMEKQREVIEIYRKMGVDVTSTC 112
++ L AK+ V TLNP G+ DEEF EKQ V+ ++ ++GV +T TC
Sbjct: 67 EWLESL---DAKLKVPATLNPAGMDVERWREMGIDEEFHEKQMRVLRVFERLGVRMTLTC 123
Query: 113 TPYYGANLPKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEE 172
TPYY P+FGDHLAW+ESSA+ +ANS++GART RE GPS++AAAI+GK P YG+H++E
Sbjct: 124 TPYYLLR-PEFGDHLAWAESSAIVYANSIIGARTERESGPSAIAAAIIGKIPYYGVHIKE 182
Query: 173 NRKATHIVTVKAELKDETDYSLLGYKVGEIVENGIPYFK-NLSPSTDELKALGASMAASG 231
NR T V +K +L + GYK G + + IPYF + S + +ELK LGA++AA+G
Sbjct: 183 NRAPTIFVRLKGDL------AAAGYKAGRELRDQIPYFVFDRSVTEEELKLLGAALAATG 236
Query: 232 GVALYHVEEHTPEWRTSIVDKVEKVEIEDKDIKEVQENFNAEWSEVDFILLGCPHASLKE 291
++H E +TPEW+ EK+E++D+ + E D I +GCPHAS++E
Sbjct: 237 NTVMFHAENYTPEWK-DFEKPAEKIEVDDRLERA---------CEPDLITIGCPHASVRE 286
Query: 292 VKKIADVIRMRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDACLVVSPIKK 351
++ I ++ R+ K +V +R V ++ + + +E ++ D C+VVSP
Sbjct: 287 LETILKLMGGRKA--KKEFWVFTARDVARKAEKI--VQKLEELGVKVFSDTCMVVSPATS 342
Query: 352 WYSGVATNSGKAAFY 366
+ + NSGKA +Y
Sbjct: 343 KFRCIMVNSGKALYY 357
>pir||B72514 hypothetical protein APE2087 - Aeropyrum pernix (strain K1)
>gi|5105786|dbj|BAA81098.1| (AP000063) 407aa long
hypothetical protein [Aeropyrum pernix]
Length = 407
Score = 228 bits (574), Expect = 1e-58
Identities = 149/402 (37%), Positives = 224/402 (55%), Gaps = 27/402 (6%)
Query: 3 LYLTKEEELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAGLS 62
LYLT+EEE IL+GE G A KA+E++V +G+ GA++LIPIK A ++G SY +G+AGL
Sbjct: 6 LYLTREEERILAGEEGEARAKALEVIVKVGEAVGAERLIPIKHAHVSGASYMTIGDAGLR 65
Query: 63 FIRDLAEMGAKVSVYTTLNPPGIGDEE------------FMEKQREVIEIYRKMGVDVTS 110
F+ LAE GA+ SV TT+NP EE ++ Q E+++ MG D+
Sbjct: 66 FLARLAESGARFSVPTTVNPVSYDVEEPGAIPMTRLSPRIVKAQSEILKALEAMGADLIL 125
Query: 111 TCTPYYGANLP-----KFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPN 165
TCTPYY +P + GD +AW ESSAV++ANSVLG TNREGGP +L A I G+T
Sbjct: 126 TCTPYY-TEVPRRVGLREGDSVAWGESSAVAYANSVLGIHTNREGGPLALMAGIAGRTYF 184
Query: 166 YGLHLEENRKATHIVTVKA-ELKDETDYSLLGYKVGEIVENGIPYFKNLSPSTDE--LKA 222
YG H E RK ++ ++ DET+ +LG + + P + +P E LK
Sbjct: 185 YGAHDPEWRKPRVAYRLETPKVLDETEAGVLGEVIATQHRDEHPPLLD-APLGGEAALKE 243
Query: 223 LGASMAASGGVALYHVEEHTPEWRTSIVDKVEKVEIEDKDIKEVQENFNAEWSEVDFILL 282
A++ ++G +A+ H+ TP ++++V V ++ D+ E+ A E D + +
Sbjct: 244 FSAAVGSAGSLAMVHITGVTPGDPGDMIEEV--VTMDYGDLARRMEDL-APGFEPDILYV 300
Query: 283 GCPHASLKEVKKIADVIRMRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDA 342
GCPHAS++E++++ + V++SR + + G E ++ R + D+
Sbjct: 301 GCPHASIEELRRLYRALSKAGERAGRRTVVSISRSLYLQALREGLVEKLKGLGVRFVRDS 360
Query: 343 CLVVSPIKKWYSG--VATNSGKAAFYFRSFGLKVKLDKLENL 382
CL+VSP G VATNS KA FY G++V L +E L
Sbjct: 361 CLIVSPFSSGARGVRVATNSYKAYFYLSKKGVEVGLAPIEAL 402
>pir||A83489 hypothetical protein PA1259 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947191|gb|AAG04648.1|AE004555_8
(AE004555) hypothetical protein [Pseudomonas aeruginosa]
Length = 580
Score = 173 bits (433), Expect = 4e-42
Identities = 120/382 (31%), Positives = 184/382 (47%), Gaps = 28/382 (7%)
Query: 9 EELILSGEYGPALQKAMEILVALGDLYGADKLIPIKSAQIAGVSYKNLGEAGLSFIRDLA 68
++ +L+GE+G A + AM I++ + L GA +LI I+ A I Y G AGL F L
Sbjct: 165 DQALLAGEHGEAARLAMRIVLRMAALQGAQRLIDIQRAHIDACIYT--GPAGLRFAETLR 222
Query: 69 EMGAKVSVYTTLNPPGIGDEEFMEK---------QREVIEIYRKMGVDVTSTCTPYYGAN 119
++GA+V V TTLN + + E+ + Y MG + TC PY +
Sbjct: 223 DLGARVRVPTTLNAISVDQRRWREQGVPAALGEPAAALARAYLDMGAQPSFTCAPYLLDD 282
Query: 120 LPKFGDHLAWSESSAVSFANSVLGARTNREGGPSSLAAAIVGKTPNYGLHLEENRKATHI 179
+ G+ + W+ES+AV FANSVLGARTN+ + A+ G+ P G HL+E R+A +
Sbjct: 283 SARAGEQIVWAESNAVLFANSVLGARTNKYADFMDICCALTGRAPLAGCHLDEQRQARVL 342
Query: 180 VTVK-AELKDETDYSLLGYKVGEIVENGIPYFKNL---SPSTDELKALGASMAASGGVAL 235
+ V+ D+ Y LGY G + + IP L P D LKA GA++ S V +
Sbjct: 343 IEVEDLGSVDDAFYPTLGYLCGLLCDGQIPAIDGLRQRQPDHDALKAFGAALGTSSSVPM 402
Query: 236 YHVEEHTPEWRTSIVDKVEKVEIEDKDIKEVQENFNAEWSE--------VDFILLGCPHA 287
+HV TPE + + ++ +E W E +D + LG PH
Sbjct: 403 FHVIGVTPE--APDLASAFGGRAPRRTLRVGRERLRDAWRELDSAGETRIDLVALGNPHF 460
Query: 288 SLKEVKKIADVIRMRETPLKVPLYVTVSRGVKALSDFLGYTEIIERYNGRLIPDA--CLV 345
S E ++A + R +V L +T SR V A ++ G+ ++ + RL+ D C++
Sbjct: 461 SASEFAQLAALCHGRRRHPEVALVITSSRQVVAQAEAAGHLATLQAFGARLVTDTCWCML 520
Query: 346 VSP-IKKWYSGVATNSGKAAFY 366
P + + TNS K A Y
Sbjct: 521 DEPLVPPGARTLMTNSAKYAHY 542
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.135 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148995040
Number of Sequences: 2977
Number of extensions: 6411909
Number of successful extensions: 16544
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16509
Number of HSP's gapped (non-prelim): 7
length of query: 387
length of database: 189,106,746
effective HSP length: 58
effective length of query: 329
effective length of database: 154,394,500
effective search space: 50795790500
effective search space used: 50795790500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 166 (69.1 bits)