BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1062 (PAB1062) DE:Hypothetical protein
(130 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75010 hypothetical protein PAB1062 - Pyrococcus abyssi (st... 254 2e-67
sp|O58091|Y353_PYRHO HYPOTHETICAL 14.0 KDA PROTEIN PH0353 >gi|74... 221 2e-57
sp|Q58802|YE07_METJA HYPOTHETICAL PROTEIN MJ1407 >gi|2128842|pir... 144 3e-34
gi|11497675 conserved hypothetical protein [Archaeoglobus fulgid... 120 8e-27
sp|O27573|YF30_METTH HYPOTHETICAL PROTEIN MTH1530 >gi|7429970|pi... 110 5e-24
sp|Q9YA49|YK89_AERPE HYPOTHETICAL PROTEIN APE2089 >gi|7445394|pi... 94 5e-19
pir||A83489 hypothetical protein PA1259 [imported] - Pseudomonas... 73 2e-12
>pir||A75010 hypothetical protein PAB1062 - Pyrococcus abyssi (strain Orsay)
>gi|5459033|emb|CAB50519.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 130
Score = 254 bits (643), Expect = 2e-67
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MKLKGKGVGKNIVEGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGR 60
MKLKGKGVGKNIVEGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGR
Sbjct: 1 MKLKGKGVGKNIVEGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGR 60
Query: 61 GSTVGSYVIYALSRNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVDISKLRTGMKVRIN 120
GSTVGSYVIYALSRNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVDISKLRTGMKVRIN
Sbjct: 61 GSTVGSYVIYALSRNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVDISKLRTGMKVRIN 120
Query: 121 PRTGEVEIIG 130
PRTGEVEIIG
Sbjct: 121 PRTGEVEIIG 130
>sp|O58091|Y353_PYRHO HYPOTHETICAL 14.0 KDA PROTEIN PH0353 >gi|7429969|pir||F71142
hypothetical protein PH0353 - Pyrococcus horikoshii
>gi|3256744|dbj|BAA29427.1| (AP000002) 134aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 134
Score = 221 bits (558), Expect = 2e-57
Identities = 108/129 (83%), Positives = 120/129 (92%)
Query: 1 MKLKGKGVGKNIVEGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGR 60
MKLKGKG+GK +VEGEVIVS+KPLSFLGGVDPETG I DP+SDIKGESI GKILVFPKG+
Sbjct: 1 MKLKGKGIGKVVVEGEVIVSRKPLSFLGGVDPETGTITDPESDIKGESITGKILVFPKGK 60
Query: 61 GSTVGSYVIYALSRNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVDISKLRTGMKVRIN 120
GSTVGSY++YALS+NGK PKAIIVEEAEPIVT GAIISGIPLI VDISKL+TGM+VRIN
Sbjct: 61 GSTVGSYILYALSKNGKGPKAIIVEEAEPIVTAGAIISGIPLITNVDISKLKTGMRVRIN 120
Query: 121 PRTGEVEII 129
P+ GEVEI+
Sbjct: 121 PQEGEVEIL 129
>sp|Q58802|YE07_METJA HYPOTHETICAL PROTEIN MJ1407 >gi|2128842|pir||F64475 conserved
hypothetical protein MJ1407 - Methanococcus jannaschii
>gi|1592056|gb|AAB99415.1| (U67581) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 129
Score = 144 bits (360), Expect = 3e-34
Identities = 73/129 (56%), Positives = 97/129 (74%), Gaps = 2/129 (1%)
Query: 1 MKLKGKGVGKNIVEGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGR 60
M+LKG+ + K I+EG IVSKKP SFLGGVD E G IID DSD+ G+S++GKI VFP GR
Sbjct: 1 MELKGRSISKGIIEGIAIVSKKPFSFLGGVDEE-GNIIDKDSDLYGQSLKGKIFVFPYGR 59
Query: 61 GSTVGSYVIYALSRNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVDISKLRTGMKVRIN 120
GSTVGSYVIY L++ G K I+ +E EPIV GAI+ GIPL+ +DI +++TG ++ ++
Sbjct: 60 GSTVGSYVIYGLAKRG-ILKGIVNKECEPIVATGAILGGIPLVDKIDIEEIKTGDRIVVD 118
Query: 121 PRTGEVEII 129
TG V+I+
Sbjct: 119 GNTGVVKIL 127
>gi|11497675 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7388366|sp|O30181|Y055_ARCFU HYPOTHETICAL PROTEIN
AF0055 >gi|7429971|pir||G69256 conserved hypothetical
protein AF0055 - Archaeoglobus fulgidus
>gi|2650587|gb|AAB91166.1| (AE001102) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 132
Score = 120 bits (297), Expect = 8e-27
Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MKLKGKGVGKNIVEGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGR 60
MK + + + EGE +V+K+ +SFLGG+D ETGI+ + D +IKGES+ G+ILVFP G+
Sbjct: 1 MKFACRAITRGRAEGEALVTKEYISFLGGIDKETGIVKE-DCEIKGESVAGRILVFPGGK 59
Query: 61 GSTVGSYVIYALSRNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVD---ISKLRTGMKV 117
GSTVGSYV+ L +NG APKAII ++ E I+ VGA ++ IPL+ D ++TG +V
Sbjct: 60 GSTVGSYVLLNLRKNGVAPKAIINKKTETIIAVGAAMAEIPLVEVRDEKFFEAVKTGDRV 119
Query: 118 RINPRTGEVEII 129
+N G VE+I
Sbjct: 120 VVNADEGYVELI 131
>sp|O27573|YF30_METTH HYPOTHETICAL PROTEIN MTH1530 >gi|7429970|pir||B69071 conserved
hypothetical protein MTH1530 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622649|gb|AAB86004.1| (AE000913) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 131
Score = 110 bits (273), Expect = 5e-24
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Query: 4 KGKGVGKNIVEGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGRGST 63
+GKG G V+VS +PLSFLGGVDP TG +ID + G SI GK+L+ P G+GST
Sbjct: 10 RGKG------RGPVLVSTEPLSFLGGVDPGTGRVIDQKHPLHGRSIRGKVLLIPGGKGST 63
Query: 64 VGSYVIYALSRNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVD---ISKLRTGMKVRIN 120
VGSYVI+ +++N AP AII AEPI+ GAI++GIP++ + L M+V ++
Sbjct: 64 VGSYVIFQMAKNETAPAAIICLNAEPIIATGAIMAGIPMVDRPSEDLLGLLEDSMEVEVD 123
Query: 121 PRTGEV 126
G++
Sbjct: 124 ADEGKI 129
>sp|Q9YA49|YK89_AERPE HYPOTHETICAL PROTEIN APE2089 >gi|7445394|pir||D72514 hypothetical
protein APE2089 - Aeropyrum pernix (strain K1)
>gi|5105788|dbj|BAA81100.1| (AP000063) 132aa long
hypothetical protein [Aeropyrum pernix]
Length = 132
Score = 94.4 bits (231), Expect = 5e-19
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 11/120 (9%)
Query: 14 EGEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGRGSTVGSYVIYALS 73
EG +V LSF G VDPETG+ G+ + G++ + RGSTVGSYVIYAL
Sbjct: 17 EGPAVVIDS-LSFYGEVDPETGVTSG------GKPLAGRVAAIRRSRGSTVGSYVIYALK 69
Query: 74 RNGKAPKAIIVEEAEPIVTVGAIISGIPLIAGVD---ISKLRTGMKVRINPRTGEVEIIG 130
NG AP AI++E AEPIV G +++GIPL G+ ++R G +VR++ G VE++G
Sbjct: 70 ENGVAPLAILMERAEPIVIAGCVLAGIPLYDGLPPEFFERVRDGYRVRVH-SDGLVEVLG 128
>pir||A83489 hypothetical protein PA1259 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947191|gb|AAG04648.1|AE004555_8
(AE004555) hypothetical protein [Pseudomonas aeruginosa]
Length = 580
Score = 72.6 bits (175), Expect = 2e-12
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 15 GEVIVSKKPLSFLGGVDPETGIIIDPDSDIKGESIEGKILVFPKGRGSTVGSYVIYALSR 74
GE++ + LSF GGVDP + +ID + G + G++L P GRGS GS V+ L
Sbjct: 19 GELLYAPTGLSFWGGVDPRSAEVIDRHHPLSGRHLHGRLLAIPGGRGSCTGSSVLLELIL 78
Query: 75 NGKAPKAIIVEEAEPIVTVGAIIS 98
G+AP AI++ E + I+ +GAI++
Sbjct: 79 GGRAPAAILLREPDEILALGAIVA 102
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.142 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49247973
Number of Sequences: 2977
Number of extensions: 2050469
Number of successful extensions: 3808
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3798
Number of HSP's gapped (non-prelim): 7
length of query: 130
length of database: 189,106,746
effective HSP length: 54
effective length of query: 76
effective length of database: 156,788,448
effective search space: 11915922048
effective search space used: 11915922048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 160 (66.7 bits)