BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1064 (PAB1064) DE:Hypothetical protein
(239 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75010 hypothetical protein PAB1064 - Pyrococcus abyssi (st... 479 e-134
pir||C71142 hypothetical protein PH0350 - Pyrococcus horikoshii ... 423 e-118
sp|Q57820|Y375_METJA HYPOTHETICAL PROTEIN MJ0375 >gi|2128283|pir... 145 4e-34
gi|11497692 conserved hypothetical protein [Archaeoglobus fulgid... 124 8e-28
pir||C72209 conserved hypothetical protein - Thermotoga maritima... 98 7e-20
pir||F75093 hypothetical protein PAB1613 - Pyrococcus abyssi (st... 98 1e-19
pir||G71069 hypothetical protein PH1252 - Pyrococcus horikoshii ... 95 8e-19
pir||A69012 conserved hypothetical protein MTH1091 - Methanobact... 76 3e-13
>pir||C75010 hypothetical protein PAB1064 - Pyrococcus abyssi (strain Orsay)
>gi|5459035|emb|CAB50521.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 239
Score = 479 bits (1219), Expect = e-134
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR 60
MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR
Sbjct: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR 60
Query: 61 KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI 120
KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI
Sbjct: 61 KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI 120
Query: 121 GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE 180
GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE
Sbjct: 121 GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE 180
Query: 181 FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE 239
FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE
Sbjct: 181 FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE 239
>pir||C71142 hypothetical protein PH0350 - Pyrococcus horikoshii
>gi|3256741|dbj|BAA29424.1| (AP000002) 239aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 239
Score = 423 bits (1076), Expect = e-118
Identities = 199/239 (83%), Positives = 229/239 (95%)
Query: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR 60
MRIE+KLLPL + PILPFNYNY+VY+QI+ KVNSIEP +A LLSSPHGFWTFSRII+RKR
Sbjct: 1 MRIEVKLLPLKDNPILPFNYNYEVYSQILEKVNSIEPTIAKLLSSPHGFWTFSRIIVRKR 60
Query: 61 KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI 120
KI+P+KGIEILSDDVSLY+SSSNE+IIRAIAEAVEKSPEFKIG +SFLVGD+KAIK+KE+
Sbjct: 61 KILPDKGIEILSDDVSLYISSSNEDIIRAIAEAVEKSPEFKIGELSFLVGDIKAIKVKEL 120
Query: 121 GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE 180
GKENVFSTLSPIVVRT+KFEG+KLRHWDLYPHDE+FMD+LRKVM+LR++E+MG +P+D++
Sbjct: 121 GKENVFSTLSPIVVRTVKFEGNKLRHWDLYPHDELFMDRLRKVMILRYSEVMGETPKDRD 180
Query: 181 FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE 239
F IEVLKFKPTRL+VG+SYIRGSLMVF+Y GSEEIARFGYENGFGEKT LGFGMVKLIE
Sbjct: 181 FTIEVLKFKPTRLMVGSSYIRGSLMVFRYAGSEEIARFGYENGFGEKTGLGFGMVKLIE 239
>sp|Q57820|Y375_METJA HYPOTHETICAL PROTEIN MJ0375 >gi|2128283|pir||G64346 hypothetical
protein MJ0375 - Methanococcus jannaschii
>gi|1591082|gb|AAB98364.1| (U67490) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 254
Score = 145 bits (363), Expect = 4e-34
Identities = 90/243 (37%), Positives = 141/243 (57%), Gaps = 10/243 (4%)
Query: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSS--PHGFWTFSRIIIR 58
MRIE++L T ++P+N+ Y + + I NK++S P A L + F+TFS + IR
Sbjct: 5 MRIELELQTDNFT-VIPYNHQYYLASAIYNKIHSANPAYAKRLHNYQKFKFFTFSLLQIR 63
Query: 59 KRKIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIK 118
KR +I ++GIE + LY+SS N E I + + + ++GNV F V K + I
Sbjct: 64 KR-VIRKEGIETIDGKAYLYISSPNNEFIENFVAGLLEDGKLRVGNVEFFVRKAKILPIP 122
Query: 119 EIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPE- 177
+ K N+ T+SPI ++T+ D L+ +DL P++ F + L+ + ++ Y+ +
Sbjct: 123 K--KFNILKTISPIYLKTMIETEDGLKTYDLLPNNSKFYENLKNNLKKKYEAF--YNEKC 178
Query: 178 DKEFQIEVLKFKPTRLIVGNS-YIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVK 236
D F+ EVLKF+P R+ + N Y R S MVFK G ++ +FGYE GFGEK ++GFGMV
Sbjct: 179 DMNFEFEVLKFRPKRMRIKNDIYCRCSEMVFKVWGDYDLIKFGYECGFGEKNSMGFGMVV 238
Query: 237 LIE 239
+E
Sbjct: 239 NVE 241
>gi|11497692 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430193|pir||H69258 conserved hypothetical protein
AF0072 - Archaeoglobus fulgidus
>gi|2650574|gb|AAB91154.1| (AE001101) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 241
Score = 124 bits (309), Expect = 8e-28
Identities = 75/242 (30%), Positives = 132/242 (53%), Gaps = 5/242 (2%)
Query: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPH--GFWTFSRIIIR 58
MR++I LL ++ + N++Y + + I + +P ++ L P F+TFS++ I
Sbjct: 1 MRLKISLLSPADSFEIDLNHSYHLASAIYRAIERADPSLSIELHKPDVPKFFTFSKLFIP 60
Query: 59 KRKIIPEKGIEILSD--DVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIK 116
KRK E G +++SD + + S+ E+ ++ E + PE +I V F+V +V +
Sbjct: 61 KRKFRIE-GEKMVSDCEEAYFFFSTLRNEVAASLVEGLLSKPEIRICGVDFIVSEVSVLP 119
Query: 117 IKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSP 176
+E+ F TLSPI T E + R +DLYP D F + + + ++ ++ +P
Sbjct: 120 EREVKGREKFVTLSPIYASTSVGENGRRRIFDLYPKDSKFYEVILQNLVKKYVLYYKSAP 179
Query: 177 EDKEFQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVK 236
E+ +F ++ L K R+ + +++ R MVFK GS E+ GY+ GFG K ++GFGMVK
Sbjct: 180 ENLDFHMKPLNVKAKRIRLKDTFHRCVEMVFKAEGSPELLDVGYKAGFGSKNSMGFGMVK 239
Query: 237 LI 238
++
Sbjct: 240 VV 241
>pir||C72209 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982395|gb|AAD36877.1|AE001818_12 (AE001818)
conserved hypothetical protein [Thermotoga maritima]
Length = 250
Score = 98.3 bits (241), Expect = 7e-20
Identities = 69/248 (27%), Positives = 117/248 (46%), Gaps = 14/248 (5%)
Query: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSP-----HGFWTFSRI 55
MR+++ + T +P NYNY + + I ++ S A L F+TFS++
Sbjct: 1 MRLKVSFQAMEST--VPLNYNYFLSSFIYKRLASQNENFARFLHEKGYGKRFKFFTFSQL 58
Query: 56 IIRKRKIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAI 115
++ E+ I I Y+SS E +R + ++ + P ++G F+V +
Sbjct: 59 FFENSRVSGER-IFIFPGKGWWYISSPVVEFVRYMFSSLSEDPVIRVGKTEFIVKSIDIE 117
Query: 116 KIKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYS 175
E F LSP+VV + KL H L+P +E F + RK ++ ++ G
Sbjct: 118 NSLPDQSEYHFVMLSPLVVSVPEENNGKLYHRYLHPGEEEFYEVFRKNLMKKYRAFYGKD 177
Query: 176 PEDKEFQI---EVLKFK---PTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTN 229
PE I + +K + R+ + N+++R + FK G +++ GYE GFGEK +
Sbjct: 178 PEGTVEVIPDWDYIKSRHRITKRIKLKNAFVRAVVFPFKIRGEKKLVEIGYEAGFGEKNS 237
Query: 230 LGFGMVKL 237
+GFGMV L
Sbjct: 238 MGFGMVAL 245
>pir||F75093 hypothetical protein PAB1613 - Pyrococcus abyssi (strain Orsay)
>gi|5458563|emb|CAB50051.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 262
Score = 97.9 bits (240), Expect = 1e-19
Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 12/242 (4%)
Query: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHG--FWTFSRIIIR 58
MR I++ P +P+N+ Y + I N++ + P+++ L G +T+S +
Sbjct: 1 MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE 60
Query: 59 KRKIIPEKGIEILSDDVS--LYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIK 116
KRK KG+ Y S+ EI A + + PE + F + +VK ++
Sbjct: 61 KRK--HPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLR 118
Query: 117 IKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSP 176
+ F TLSP+ V +K EG + +D+ P +E F +++ + ++ I G P
Sbjct: 119 EPTKFSGSTFITLSPVAVTMVK-EG---KRYDVSPLEEEFYTLIKENLKDKYVMIKGEKP 174
Query: 177 EDKEFQIEVLKFKPTRLIVGNS-YIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMV 235
D +F++EV+ KP R V Y +VFK G +E+ + GY GFGEK +LGFGMV
Sbjct: 175 PD-DFEMEVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMV 233
Query: 236 KL 237
K+
Sbjct: 234 KV 235
>pir||G71069 hypothetical protein PH1252 - Pyrococcus horikoshii
>gi|3257670|dbj|BAA30353.1| (AP000005) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 94.8 bits (232), Expect = 8e-19
Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 12/244 (4%)
Query: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHG--FWTFSRIIIR 58
MR IK+ P +P+N+ Y + I N++ P+++ L G +T+S +
Sbjct: 4 MRFLIKVKPEERKFRVPYNHQYFLQGLIYNRIKLTNPRLSTFLHETKGPKLFTYSLFMTE 63
Query: 59 KRKIIPEKGIEILSDDVS--LYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIK 116
+R+ KG+ Y S+ EI A + + PE + F + +VK +K
Sbjct: 64 RRE--HPKGLPYFLGYRRGFFYFSTCIPEIAEAFITGLFREPEITLWGEKFYLEEVKTLK 121
Query: 117 IKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSP 176
+ + F TLSPI V K G K +D+ P +E F +R+ + ++ I G P
Sbjct: 122 EPKKFSGSTFITLSPIAVTMEK--GGK--RYDVSPLEEEFYALIRENLKDKYVMIKGEKP 177
Query: 177 EDKEFQIEVLKFKPTRLIVGNS-YIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMV 235
D +F++E++ KP R V Y +VF+ G +E+ R GY GFGEK +LGFGMV
Sbjct: 178 PD-DFEMEIIAAKPKRFEVKPGIYQMAWHLVFRAYGDDELIRVGYVVGFGEKNSLGFGMV 236
Query: 236 KLIE 239
K+ E
Sbjct: 237 KVDE 240
>pir||A69012 conserved hypothetical protein MTH1091 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622191|gb|AAB85580.1| (AE000879) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 154
Score = 76.5 bits (185), Expect = 3e-13
Identities = 44/144 (30%), Positives = 75/144 (51%), Gaps = 6/144 (4%)
Query: 98 PEFKIGNVSFLVGDVKAIKIKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFM 157
PE S V V+ ++ E + F TLSPI+++T++ E L+ WD+ P+D F
Sbjct: 8 PEIDFLRRSVNVEYVEFLEPPEFRRNMKFRTLSPIIIKTVREEDGVLKQWDVNPNDLKFY 67
Query: 158 DKLRKVMLLRFNEIMGYSPEDKEFQIEVLK--FKPTRLIV----GNSYIRGSLMVFKYTG 211
+ L+ ++ ++ E G D+ ++ + K R+++ +Y R M F+ G
Sbjct: 68 ENLQNNLVRKYREFYGDYDGDEYLRLVPYQRSIKRKRIMIPKEGAETYHRAYHMKFRVEG 127
Query: 212 SEEIARFGYENGFGEKTNLGFGMV 235
+ FGY+ GFGEK ++GFGMV
Sbjct: 128 DPRLIEFGYDCGFGEKNSMGFGMV 151
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86630543
Number of Sequences: 2977
Number of extensions: 3589498
Number of successful extensions: 8547
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8530
Number of HSP's gapped (non-prelim): 9
length of query: 239
length of database: 189,106,746
effective HSP length: 55
effective length of query: 184
effective length of database: 156,189,961
effective search space: 28738952824
effective search space used: 28738952824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)