BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1064 (PAB1064) DE:Hypothetical protein
         (239 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75010 hypothetical protein PAB1064 - Pyrococcus abyssi (st...   479  e-134
pir||C71142 hypothetical protein PH0350 - Pyrococcus horikoshii ...   423  e-118
sp|Q57820|Y375_METJA HYPOTHETICAL PROTEIN MJ0375 >gi|2128283|pir...   145  4e-34
gi|11497692 conserved hypothetical protein [Archaeoglobus fulgid...   124  8e-28
pir||C72209 conserved hypothetical protein - Thermotoga maritima...    98  7e-20
pir||F75093 hypothetical protein PAB1613 - Pyrococcus abyssi (st...    98  1e-19
pir||G71069 hypothetical protein PH1252 - Pyrococcus horikoshii ...    95  8e-19
pir||A69012 conserved hypothetical protein MTH1091 - Methanobact...    76  3e-13

>pir||C75010 hypothetical protein PAB1064 - Pyrococcus abyssi (strain Orsay)
           >gi|5459035|emb|CAB50521.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 239
           
 Score =  479 bits (1219), Expect = e-134
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR 60
           MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR
Sbjct: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR 60

Query: 61  KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI 120
           KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI
Sbjct: 61  KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI 120

Query: 121 GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE 180
           GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE
Sbjct: 121 GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE 180

Query: 181 FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE 239
           FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE
Sbjct: 181 FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE 239


>pir||C71142 hypothetical protein PH0350 - Pyrococcus horikoshii
           >gi|3256741|dbj|BAA29424.1| (AP000002) 239aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 239
           
 Score =  423 bits (1076), Expect = e-118
 Identities = 199/239 (83%), Positives = 229/239 (95%)

Query: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHGFWTFSRIIIRKR 60
           MRIE+KLLPL + PILPFNYNY+VY+QI+ KVNSIEP +A LLSSPHGFWTFSRII+RKR
Sbjct: 1   MRIEVKLLPLKDNPILPFNYNYEVYSQILEKVNSIEPTIAKLLSSPHGFWTFSRIIVRKR 60

Query: 61  KIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIKEI 120
           KI+P+KGIEILSDDVSLY+SSSNE+IIRAIAEAVEKSPEFKIG +SFLVGD+KAIK+KE+
Sbjct: 61  KILPDKGIEILSDDVSLYISSSNEDIIRAIAEAVEKSPEFKIGELSFLVGDIKAIKVKEL 120

Query: 121 GKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPEDKE 180
           GKENVFSTLSPIVVRT+KFEG+KLRHWDLYPHDE+FMD+LRKVM+LR++E+MG +P+D++
Sbjct: 121 GKENVFSTLSPIVVRTVKFEGNKLRHWDLYPHDELFMDRLRKVMILRYSEVMGETPKDRD 180

Query: 181 FQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVKLIE 239
           F IEVLKFKPTRL+VG+SYIRGSLMVF+Y GSEEIARFGYENGFGEKT LGFGMVKLIE
Sbjct: 181 FTIEVLKFKPTRLMVGSSYIRGSLMVFRYAGSEEIARFGYENGFGEKTGLGFGMVKLIE 239


>sp|Q57820|Y375_METJA HYPOTHETICAL PROTEIN MJ0375 >gi|2128283|pir||G64346 hypothetical
           protein MJ0375 - Methanococcus jannaschii
           >gi|1591082|gb|AAB98364.1| (U67490) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 254
           
 Score =  145 bits (363), Expect = 4e-34
 Identities = 90/243 (37%), Positives = 141/243 (57%), Gaps = 10/243 (4%)

Query: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSS--PHGFWTFSRIIIR 58
           MRIE++L     T ++P+N+ Y + + I NK++S  P  A  L +     F+TFS + IR
Sbjct: 5   MRIELELQTDNFT-VIPYNHQYYLASAIYNKIHSANPAYAKRLHNYQKFKFFTFSLLQIR 63

Query: 59  KRKIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIKIK 118
           KR +I ++GIE +     LY+SS N E I      + +  + ++GNV F V   K + I 
Sbjct: 64  KR-VIRKEGIETIDGKAYLYISSPNNEFIENFVAGLLEDGKLRVGNVEFFVRKAKILPIP 122

Query: 119 EIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSPE- 177
           +  K N+  T+SPI ++T+    D L+ +DL P++  F + L+  +  ++     Y+ + 
Sbjct: 123 K--KFNILKTISPIYLKTMIETEDGLKTYDLLPNNSKFYENLKNNLKKKYEAF--YNEKC 178

Query: 178 DKEFQIEVLKFKPTRLIVGNS-YIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVK 236
           D  F+ EVLKF+P R+ + N  Y R S MVFK  G  ++ +FGYE GFGEK ++GFGMV 
Sbjct: 179 DMNFEFEVLKFRPKRMRIKNDIYCRCSEMVFKVWGDYDLIKFGYECGFGEKNSMGFGMVV 238

Query: 237 LIE 239
            +E
Sbjct: 239 NVE 241


>gi|11497692 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7430193|pir||H69258 conserved hypothetical protein
           AF0072 - Archaeoglobus fulgidus
           >gi|2650574|gb|AAB91154.1| (AE001101) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 241
           
 Score =  124 bits (309), Expect = 8e-28
 Identities = 75/242 (30%), Positives = 132/242 (53%), Gaps = 5/242 (2%)

Query: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPH--GFWTFSRIIIR 58
           MR++I LL   ++  +  N++Y + + I   +   +P ++  L  P    F+TFS++ I 
Sbjct: 1   MRLKISLLSPADSFEIDLNHSYHLASAIYRAIERADPSLSIELHKPDVPKFFTFSKLFIP 60

Query: 59  KRKIIPEKGIEILSD--DVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIK 116
           KRK   E G +++SD  +   + S+   E+  ++ E +   PE +I  V F+V +V  + 
Sbjct: 61  KRKFRIE-GEKMVSDCEEAYFFFSTLRNEVAASLVEGLLSKPEIRICGVDFIVSEVSVLP 119

Query: 117 IKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSP 176
            +E+     F TLSPI   T   E  + R +DLYP D  F + + + ++ ++      +P
Sbjct: 120 EREVKGREKFVTLSPIYASTSVGENGRRRIFDLYPKDSKFYEVILQNLVKKYVLYYKSAP 179

Query: 177 EDKEFQIEVLKFKPTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMVK 236
           E+ +F ++ L  K  R+ + +++ R   MVFK  GS E+   GY+ GFG K ++GFGMVK
Sbjct: 180 ENLDFHMKPLNVKAKRIRLKDTFHRCVEMVFKAEGSPELLDVGYKAGFGSKNSMGFGMVK 239

Query: 237 LI 238
           ++
Sbjct: 240 VV 241


>pir||C72209 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4982395|gb|AAD36877.1|AE001818_12 (AE001818)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 250
           
 Score = 98.3 bits (241), Expect = 7e-20
 Identities = 69/248 (27%), Positives = 117/248 (46%), Gaps = 14/248 (5%)

Query: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSP-----HGFWTFSRI 55
           MR+++    +  T  +P NYNY + + I  ++ S     A  L          F+TFS++
Sbjct: 1   MRLKVSFQAMEST--VPLNYNYFLSSFIYKRLASQNENFARFLHEKGYGKRFKFFTFSQL 58

Query: 56  IIRKRKIIPEKGIEILSDDVSLYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAI 115
                ++  E+ I I       Y+SS   E +R +  ++ + P  ++G   F+V  +   
Sbjct: 59  FFENSRVSGER-IFIFPGKGWWYISSPVVEFVRYMFSSLSEDPVIRVGKTEFIVKSIDIE 117

Query: 116 KIKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYS 175
                  E  F  LSP+VV   +    KL H  L+P +E F +  RK ++ ++    G  
Sbjct: 118 NSLPDQSEYHFVMLSPLVVSVPEENNGKLYHRYLHPGEEEFYEVFRKNLMKKYRAFYGKD 177

Query: 176 PEDKEFQI---EVLKFK---PTRLIVGNSYIRGSLMVFKYTGSEEIARFGYENGFGEKTN 229
           PE     I   + +K +     R+ + N+++R  +  FK  G +++   GYE GFGEK +
Sbjct: 178 PEGTVEVIPDWDYIKSRHRITKRIKLKNAFVRAVVFPFKIRGEKKLVEIGYEAGFGEKNS 237

Query: 230 LGFGMVKL 237
           +GFGMV L
Sbjct: 238 MGFGMVAL 245


>pir||F75093 hypothetical protein PAB1613 - Pyrococcus abyssi (strain Orsay)
           >gi|5458563|emb|CAB50051.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 262
           
 Score = 97.9 bits (240), Expect = 1e-19
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 12/242 (4%)

Query: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHG--FWTFSRIIIR 58
           MR  I++ P      +P+N+ Y +   I N++  + P+++  L    G   +T+S  +  
Sbjct: 1   MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE 60

Query: 59  KRKIIPEKGIEILSDDVS--LYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIK 116
           KRK    KG+           Y S+   EI  A    + + PE  +    F + +VK ++
Sbjct: 61  KRK--HPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLR 118

Query: 117 IKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSP 176
                  + F TLSP+ V  +K EG   + +D+ P +E F   +++ +  ++  I G  P
Sbjct: 119 EPTKFSGSTFITLSPVAVTMVK-EG---KRYDVSPLEEEFYTLIKENLKDKYVMIKGEKP 174

Query: 177 EDKEFQIEVLKFKPTRLIVGNS-YIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMV 235
            D +F++EV+  KP R  V    Y     +VFK  G +E+ + GY  GFGEK +LGFGMV
Sbjct: 175 PD-DFEMEVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMV 233

Query: 236 KL 237
           K+
Sbjct: 234 KV 235


>pir||G71069 hypothetical protein PH1252 - Pyrococcus horikoshii
           >gi|3257670|dbj|BAA30353.1| (AP000005) 267aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 267
           
 Score = 94.8 bits (232), Expect = 8e-19
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 1   MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHG--FWTFSRIIIR 58
           MR  IK+ P      +P+N+ Y +   I N++    P+++  L    G   +T+S  +  
Sbjct: 4   MRFLIKVKPEERKFRVPYNHQYFLQGLIYNRIKLTNPRLSTFLHETKGPKLFTYSLFMTE 63

Query: 59  KRKIIPEKGIEILSDDVS--LYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIK 116
           +R+    KG+           Y S+   EI  A    + + PE  +    F + +VK +K
Sbjct: 64  RRE--HPKGLPYFLGYRRGFFYFSTCIPEIAEAFITGLFREPEITLWGEKFYLEEVKTLK 121

Query: 117 IKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSP 176
             +    + F TLSPI V   K  G K   +D+ P +E F   +R+ +  ++  I G  P
Sbjct: 122 EPKKFSGSTFITLSPIAVTMEK--GGK--RYDVSPLEEEFYALIRENLKDKYVMIKGEKP 177

Query: 177 EDKEFQIEVLKFKPTRLIVGNS-YIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMV 235
            D +F++E++  KP R  V    Y     +VF+  G +E+ R GY  GFGEK +LGFGMV
Sbjct: 178 PD-DFEMEIIAAKPKRFEVKPGIYQMAWHLVFRAYGDDELIRVGYVVGFGEKNSLGFGMV 236

Query: 236 KLIE 239
           K+ E
Sbjct: 237 KVDE 240


>pir||A69012 conserved hypothetical protein MTH1091 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622191|gb|AAB85580.1| (AE000879) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 154
           
 Score = 76.5 bits (185), Expect = 3e-13
 Identities = 44/144 (30%), Positives = 75/144 (51%), Gaps = 6/144 (4%)

Query: 98  PEFKIGNVSFLVGDVKAIKIKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFM 157
           PE      S  V  V+ ++  E  +   F TLSPI+++T++ E   L+ WD+ P+D  F 
Sbjct: 8   PEIDFLRRSVNVEYVEFLEPPEFRRNMKFRTLSPIIIKTVREEDGVLKQWDVNPNDLKFY 67

Query: 158 DKLRKVMLLRFNEIMGYSPEDKEFQIEVLK--FKPTRLIV----GNSYIRGSLMVFKYTG 211
           + L+  ++ ++ E  G    D+  ++   +   K  R+++      +Y R   M F+  G
Sbjct: 68  ENLQNNLVRKYREFYGDYDGDEYLRLVPYQRSIKRKRIMIPKEGAETYHRAYHMKFRVEG 127

Query: 212 SEEIARFGYENGFGEKTNLGFGMV 235
              +  FGY+ GFGEK ++GFGMV
Sbjct: 128 DPRLIEFGYDCGFGEKNSMGFGMV 151


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.141    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86630543
Number of Sequences: 2977
Number of extensions: 3589498
Number of successful extensions: 8547
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8530
Number of HSP's gapped (non-prelim): 9
length of query: 239
length of database: 189,106,746
effective HSP length: 55
effective length of query: 184
effective length of database: 156,189,961
effective search space: 28738952824
effective search space used: 28738952824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)