BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1065 (PAB1065) DE:GTP-BINDING PROTEIN ERA related
(186 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75010 GTP-binding protein era related PAB1065 - Pyrococcus... 366 e-101
pir||E71141 hypothetical protein PH0344 - Pyrococcus horikoshii ... 331 3e-90
sp|Q58330|Y920_METJA HYPOTHETICAL PROTEIN MJ0920 >gi|2128039|pir... 152 3e-36
sp|O67800|ERA_AQUAE GTP-BINDING PROTEIN ERA HOMOLOG >gi|7438442|... 92 5e-18
sp|O69162|ERA_BRAJA GTP-BINDING PROTEIN ERA HOMOLOG 76 3e-13
gb|AAD02940.2| (AF065159) GTP-binding protein Era [Bradyrhizobiu... 76 3e-13
sp|Q55526|ERA_SYNY3 GTP-BINDING PROTEIN ERA HOMOLOG >gi|7438449|... 74 1e-12
sp|O67749|ENGA_AQUAE PROBABLE GTP-BINDING PROTEIN ENGA >gi|74505... 71 6e-12
sp|Q9X1F8|ENGA_THEMA PROBABLE GTP-BINDING PROTEIN ENGA >gi|74505... 71 6e-12
pir||B82284 GTP-binding protein VC0763 [imported] - Vibrio chole... 71 8e-12
sp|P57662|ENGA_BUCAI PROBABLE GTP-BINDING PROTEIN ENGA >gi|10039... 70 1e-11
sp|P25811|THDF_BACSU POSSIBLE THIOPHENE AND FURAN OXIDATION PROT... 70 2e-11
dbj|BAB05086.1| (AP001511) GTP-binding protein (Era/ThdF family)... 69 2e-11
emb|CAA49238.1| (X69481) GTPase [Saccharomyces cerevisiae] 69 4e-11
gi|6323665 putative mitochondrial GTPase; Mss1p [Saccharomyces c... 69 4e-11
sp|O51881|ENGA_BUCAP PROBABLE GTP-BINDING PROTEIN ENGA >gi|28270... 68 5e-11
sp|Q9WZV1|ERA_THEMA GTP-BINDING PROTEIN ERA HOMOLOG >gi|7438444|... 68 7e-11
gb|AAF73946.1|AF233268_1 (AF233268) GTP-binding protein Era [Lac... 68 7e-11
pir||D75086 GTP-binding protein hflx PAB0722 - Pyrococcus abyssi... 68 9e-11
>pir||G75010 GTP-binding protein era related PAB1065 - Pyrococcus abyssi
(strain Orsay) >gi|5459039|emb|CAB50525.1| (AJ248288)
GTP-BINDING PROTEIN ERA related [Pyrococcus abyssi]
Length = 186
Score = 366 bits (930), Expect = e-101
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MIKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGA 60
MIKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGA
Sbjct: 1 MIKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGA 60
Query: 61 DEIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHY 120
DEIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHY
Sbjct: 61 DEIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHY 120
Query: 121 MLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILMSLVTYEGFNELLKALAY 180
MLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILMSLVTYEGFNELLKALAY
Sbjct: 121 MLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILMSLVTYEGFNELLKALAY 180
Query: 181 YSQYAK 186
YSQYAK
Sbjct: 181 YSQYAK 186
>pir||E71141 hypothetical protein PH0344 - Pyrococcus horikoshii
>gi|3256735|dbj|BAA29418.1| (AP000002) 186aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 186
Score = 331 bits (840), Expect = 3e-90
Identities = 162/186 (87%), Positives = 177/186 (95%)
Query: 1 MIKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGA 60
MIKVAIIGAENVGKSTLMNAL+GGK SEVSETPGTTK IKR FGK+K+PKTMKNP+GGA
Sbjct: 1 MIKVAIIGAENVGKSTLMNALLGGKFSEVSETPGTTKGIIKRAFGKIKLPKTMKNPFGGA 60
Query: 61 DEIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHY 120
DE++LIDTAGLFDPEKE+RGKVLSEEKFKELI+EIV ADVIIHMIDATKGLHRGMEKLHY
Sbjct: 61 DELVLIDTAGLFDPEKEIRGKVLSEEKFKELIKEIVNADVIIHMIDATKGLHRGMEKLHY 120
Query: 121 MLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILMSLVTYEGFNELLKALAY 180
MLKFRYEKPIIVVINKIDLV RE +E+L+E+VKKRLEQEPIL+SLVTYEGFNELLKAL Y
Sbjct: 121 MLKFRYEKPIIVVINKIDLVSREELERLRELVKKRLEQEPILLSLVTYEGFNELLKALTY 180
Query: 181 YSQYAK 186
Y+QY +
Sbjct: 181 YAQYVE 186
>sp|Q58330|Y920_METJA HYPOTHETICAL PROTEIN MJ0920 >gi|2128039|pir||H64414 hypothetical
protein homolog MJ0920 - Methanococcus jannaschii
>gi|1591593|gb|AAB98924.1| (U67535) GTP-binding protein
homologue (yphC) [Methanococcus jannaschii]
Length = 185
Score = 152 bits (380), Expect = 3e-36
Identities = 82/179 (45%), Positives = 117/179 (64%), Gaps = 3/179 (1%)
Query: 3 KVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADE 62
K+AIIG EN GKS++MNAL G VS VSE GTTK IKRY+GK+KI + + P
Sbjct: 7 KIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPE--FVN 64
Query: 63 IILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYML 122
++ +D GL+ + + +++ + ++ EEI +D+IIH+ID + GL R E+LH++L
Sbjct: 65 LVFVDLGGLYTTTDK-QSPIMTPKVLEKTFEEINDSDMIIHVIDGSVGLLRSFERLHHLL 123
Query: 123 KFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILMSLVTYEGFNELLKALAYY 181
KFRY+KPIIVVINK DL+ E LK V++R++ PI +S T+EG ELL + Y
Sbjct: 124 KFRYQKPIIVVINKCDLLNDSDKEHLKNYVERRIKNTPIFVSAKTFEGIPELLDIIIKY 182
>sp|O67800|ERA_AQUAE GTP-BINDING PROTEIN ERA HOMOLOG >gi|7438442|pir||D70471 GTP-binding
protein Era - Aquifex aeolicus
>gi|2984240|gb|AAC07768.1| (AE000767) GTP-binding
protein Era [Aquifex aeolicus]
Length = 301
Score = 91.7 bits (224), Expect = 5e-18
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 17/181 (9%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
VAI+G NVGKSTL+N L+G KVS +S GTT+ R G IP +I
Sbjct: 6 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR---MRVLGVKNIPNEA--------QI 54
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYMLK 123
I +DT G+++P+K VL + + + +ADVI+ MIDAT+G E+++
Sbjct: 55 IFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 111
Query: 124 FRYEKPIIVVINKIDLV--PRERIEKLKEIVKKRLE-QEPILMSLVTYEGFNELLKALAY 180
KP+IVVINKID + + + + EI KK E E + +S + +EL+K +
Sbjct: 112 KPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILK 171
Query: 181 Y 181
Y
Sbjct: 172 Y 172
>sp|O69162|ERA_BRAJA GTP-BINDING PROTEIN ERA HOMOLOG
Length = 208
Score = 75.7 bits (183), Expect = 3e-13
Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 21/178 (11%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
VA+IGA NVGKSTL+NAL+G KV+ VS TT+ I+ ++N +I
Sbjct: 18 VALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGI--------VIEN----NAQI 65
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEK-LHYML 122
IL+DT G+F P++ + ++S AD++ ++DA G+ E L
Sbjct: 66 ILVDTPGIFSPKRRLDRAMVS-----TAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAA 120
Query: 123 KFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLE-QEPILMSLVTYEGFNELLKALA 179
++K I+VINK+DLV RE++ L + +R+ + +++ ++ +G ++L LA
Sbjct: 121 SVNHDK--ILVINKVDLVQREKLLALAQAANERMPFAKTFMIAAISGDGVDDLRSTLA 176
>gb|AAD02940.2| (AF065159) GTP-binding protein Era [Bradyrhizobium japonicum]
Length = 309
Score = 75.7 bits (183), Expect = 3e-13
Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 21/178 (11%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
VA+IGA NVGKSTL+NAL+G KV+ VS TT+ I+ ++N +I
Sbjct: 18 VALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGI--------VIEN----NAQI 65
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEK-LHYML 122
IL+DT G+F P++ + ++S AD++ ++DA G+ E L
Sbjct: 66 ILVDTPGIFSPKRRLDRAMVS-----TAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAA 120
Query: 123 KFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLE-QEPILMSLVTYEGFNELLKALA 179
++K I+VINK+DLV RE++ L + +R+ + +++ ++ +G ++L LA
Sbjct: 121 SVNHDK--ILVINKVDLVQREKLLALAQAANERMPFAKTFMIAAISGDGVDDLRSTLA 176
>sp|Q55526|ERA_SYNY3 GTP-BINDING PROTEIN ERA HOMOLOG >gi|7438449|pir||S76043
hypothetical protein - Synechocystis sp. (strain PCC
6803) >gi|1001399|dbj|BAA10021.1| (D63999) GTP-binding
protein Era [Synechocystis sp.]
Length = 315
Score = 73.7 bits (178), Expect = 1e-12
Identities = 56/178 (31%), Positives = 91/178 (50%), Gaps = 21/178 (11%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
VAI+G NVGKSTLMN L+G K++ S TT+ ++ G + P + +I
Sbjct: 25 VAIVGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQ---GIITTP---------SSQI 72
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYMLK 123
IL+DT G+ P E+ G+VL K I+ I D+++ ++D++ L RG ++ L
Sbjct: 73 ILLDTPGIHKPHHEL-GRVL----VKNAIQAIHSVDLVVFLVDSSATLGRG-DRFVVDLL 126
Query: 124 FRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEP---ILMSLVTYEGFNELLKAL 178
+ + P++V +NK D P ++ E+L + E S +T EG + AL
Sbjct: 127 QKTDGPVVVGLNKQDQQPPDQREELNASYETLTENHGWPCFKFSALTGEGLSNFQSAL 184
>sp|O67749|ENGA_AQUAE PROBABLE GTP-BINDING PROTEIN ENGA >gi|7450585|pir||A70465 probable
GTP binding protein - Aquifex aeolicus
>gi|2984183|gb|AAC07715.1| (AE000763) GTP binding
protein Era [Aquifex aeolicus]
Length = 433
Score = 71.4 bits (172), Expect = 6e-12
Identities = 49/142 (34%), Positives = 81/142 (56%), Gaps = 17/142 (11%)
Query: 3 KVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADE 62
+V IIG NVGKSTL N +IG + + V + PG T+ I+ K + G E
Sbjct: 4 RVVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIE-----------AKAEWAG-KE 51
Query: 63 IILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYML 122
I++DT GL E + +++ E K K + +EI KADVI+ ++D +GL+ +++ L
Sbjct: 52 FIIVDTGGLV---PETKDELIREVK-KVVEQEIPKADVILFVVDGKEGLNPLDQEIAKYL 107
Query: 123 KFRYEKPIIVVINKIDLVPRER 144
+ Y +++V+NKID + +E+
Sbjct: 108 -YPYADKVLLVVNKIDNLRQEK 128
Score = 71.4 bits (172), Expect = 6e-12
Identities = 65/190 (34%), Positives = 99/190 (51%), Gaps = 21/190 (11%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
IKVA IG NVGKS+L+NA++ + VS GTT+ I +IP K+
Sbjct: 175 IKVAFIGRPNVGKSSLVNAILKDERVIVSPIAGTTRDAI-------EIPFRWKD-----K 222
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYM 121
ILIDTAG+ P G + ++ I ADV +IDA++G R ++L +
Sbjct: 223 NFILIDTAGVRRPSNVEYG--IEFYSVGRSLKAIDLADVCCLVIDASEGPTRQDKRLGGL 280
Query: 122 LKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKR---LEQEPILMSLVTY-EGFNELLKA 177
++ RY K ++V NK+D+ P E+L+ I++K L+ PI+ ++ T +G ELL
Sbjct: 281 IERRY-KGCVIVANKMDISPWSE-EELEGIIRKELFFLDFAPIVFTVATKGKGVEELLNW 338
Query: 178 L-AYYSQYAK 186
+ Y Y K
Sbjct: 339 IDVVYKDYTK 348
>sp|Q9X1F8|ENGA_THEMA PROBABLE GTP-BINDING PROTEIN ENGA >gi|7450588|pir||B72253 conserved
hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982010|gb|AAD36514.1|AE001796_6 (AE001796)
conserved hypothetical protein [Thermotoga maritima]
Length = 439
Score = 71.4 bits (172), Expect = 6e-12
Identities = 49/159 (30%), Positives = 90/159 (55%), Gaps = 20/159 (12%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
IKVAI+G NVGKSTL NA++ + + VS PGTT+ + +
Sbjct: 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVD------------DEVFIDGR 228
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFK--ELIEEIVKADVIIHMIDATKGLHRGMEKLH 119
+ + +DTAGL ++ R + + EK+ +++ I KADV++ ++DAT+G+ R +++
Sbjct: 229 KYVFVDTAGL---RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRIA 285
Query: 120 YMLKFRYEKPIIVVINKIDLVP--RERIEKLKEIVKKRL 156
+++ R + +VV NK DLV +R ++ ++ +++L
Sbjct: 286 GLVE-RRGRASVVVFNKWDLVEHREKRYDEFTKLFREKL 323
>pir||B82284 GTP-binding protein VC0763 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9655209|gb|AAF93928.1| (AE004161)
GTP-binding protein [Vibrio cholerae]
Length = 494
Score = 71.0 bits (171), Expect = 8e-12
Identities = 48/135 (35%), Positives = 73/135 (53%), Gaps = 18/135 (13%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
VA++G NVGKSTL N L + + V++ PG T+ R +G+ K+ G E
Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTR---DRKYGQAKL---------GEHEF 52
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYMLK 123
I+IDT G+ E+ V K+ + + I +ADV++ M+D GL E + L+
Sbjct: 53 IVIDTGGIDGSEEGVETKMAQQS-----LAAIDEADVVLFMVDGRAGLTVADEAIAQHLR 107
Query: 124 FRYEKPIIVVINKID 138
R EKP I+V+NK+D
Sbjct: 108 -RIEKPAILVVNKVD 121
>sp|P57662|ENGA_BUCAI PROBABLE GTP-BINDING PROTEIN ENGA >gi|10039257|dbj|BAB13291.1|
(AP001119) hypothetical GTP-binding protein [Buchnera
sp. APS]
Length = 453
Score = 70.2 bits (169), Expect = 1e-11
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 17/157 (10%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
IKVA IG NVGKSTL+N ++ + S TPGTT +I +K Y +
Sbjct: 187 IKVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSIS---------TPIKYNY---E 234
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDAT-KGLHRGMEKLHY 120
LIDTAG +K++ + ++ I K++VI+ +IDA+ + H+ + +
Sbjct: 235 NYTLIDTAGASKKKKKIND--FQRFSIIKTLQTIEKSNVILLIIDASLQTCHQDLSLADF 292
Query: 121 MLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLE 157
++ K I+VV+NK DL ++K+KE++K +L+
Sbjct: 293 II--HSGKGIVVVVNKCDLFNSVELKKIKELIKSKLK 327
>sp|P25811|THDF_BACSU POSSIBLE THIOPHENE AND FURAN OXIDATION PROTEIN THDF
>gi|80290|pir||JQ1215 thiophen / furan oxidation protein
thdF - Bacillus subtilis >gi|40025|emb|CAA44403.1|
(X62539) homologous to E.coli 50K [Bacillus subtilis]
>gi|467386|dbj|BAA05232.1| (D26185) thiophen and furan
oxidation [Bacillus subtilis]
>gi|2636649|emb|CAB16139.1| (Z99124) thdF [Bacillus
subtilis]
Length = 459
Score = 69.9 bits (168), Expect = 2e-11
Identities = 51/177 (28%), Positives = 95/177 (52%), Gaps = 23/177 (12%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
+ IIG NVGKS+L+N+L+ + V++ PGTT+ I+ Y +P
Sbjct: 222 LSTVIIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVP----------- 270
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYM 121
+ L+DTAG+ + E V + E+ +++++E AD+I+ +++ ++ L KL
Sbjct: 271 -LRLVDTAGIRETEDIVER--IGVERSRQVLKE---ADLILLVLNYSEELSEEDVKLFEA 324
Query: 122 LKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILMSLVTYEGFNELLKAL 178
++ +IV++NK DL P+ E+++E+ R + SL+ EG N+L +A+
Sbjct: 325 VE---GMDVIVILNKTDLEPKIDTERVRELANGR---PVVTTSLLKEEGINDLEEAI 375
>dbj|BAB05086.1| (AP001511) GTP-binding protein (Era/ThdF family) [Bacillus
halodurans]
Length = 304
Score = 69.5 bits (167), Expect = 2e-11
Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 18/159 (11%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
V+IIG NVGKSTL+N +IG K++ +S+ P TT+ I+ + +I
Sbjct: 13 VSIIGRPNVGKSTLLNHVIGQKIAIMSDKPQTTRNKIQGVYTSED------------SQI 60
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYMLK 123
+ IDT G+ P+ + L + K + + D+I++++D + G E + LK
Sbjct: 61 VFIDTPGIHKPKHK-----LGDFMMKVAQNTLKEVDLILYVVDGAEAFGPGEEFIIERLK 115
Query: 124 FRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPIL 162
+ P+I+VINKID V + + L E + + E E ++
Sbjct: 116 -EAKTPVILVINKIDKVHPDDLLSLIETYRHKHEFEEVV 153
>emb|CAA49238.1| (X69481) GTPase [Saccharomyces cerevisiae]
Length = 526
Score = 68.7 bits (165), Expect = 4e-11
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 20/181 (11%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
IK+ ++GA NVGKS+L+N+L +S VS+ PGTT+ +I M N G
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSI----------DAMINVNG--Y 322
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKL--H 119
++I+ DTAG+ + + + ++L ++ K ++ V++D+ + ++D T E + H
Sbjct: 323 KVIICDTAGIREKSSD-KIEMLGIDRAK---KKSVQSDLCLFIVDPTDLSKLLPEDILAH 378
Query: 120 YMLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRL-EQEPIL-MSLVTYEGFNELLKA 177
K K II+V+NK DLV + + K+ ++ RL + PIL +S T EG L+
Sbjct: 379 LSSKTFGNKRIIIVVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLIST 438
Query: 178 L 178
L
Sbjct: 439 L 439
>gi|6323665 putative mitochondrial GTPase; Mss1p [Saccharomyces cerevisiae]
>gi|1709142|sp|P32559|MSS1_YEAST MITOCHONDRIAL GTPASE
MSS1 PRECURSOR >gi|1078133|pir||S54025 GTPase MSS1,
mitochondrial - yeast (Saccharomyces cerevisiae)
>gi|798934|emb|CAA89126.1| (Z49211) Mss1p [Saccharomyces
cerevisiae]
Length = 526
Score = 68.7 bits (165), Expect = 4e-11
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 20/181 (11%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
IK+ ++GA NVGKS+L+N+L +S VS+ PGTT+ +I M N G
Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSI----------DAMINVNG--Y 322
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKL--H 119
++I+ DTAG+ + + + ++L ++ K ++ V++D+ + ++D T E + H
Sbjct: 323 KVIICDTAGIREKSSD-KIEMLGIDRAK---KKSVQSDLCLFIVDPTDLSKLLPEDILAH 378
Query: 120 YMLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRL-EQEPIL-MSLVTYEGFNELLKA 177
K K II+V+NK DLV + + K+ ++ RL + PIL +S T EG L+
Sbjct: 379 LSSKTFGNKRIIIVVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLIST 438
Query: 178 L 178
L
Sbjct: 439 L 439
>sp|O51881|ENGA_BUCAP PROBABLE GTP-BINDING PROTEIN ENGA >gi|2827027|gb|AAC38119.1|
(AF008210) ORF453 hypothetical protein [Buchnera
aphidicola]
Length = 453
Score = 68.3 bits (164), Expect = 5e-11
Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 25/193 (12%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
+K+A IG NVGKSTL+N+L+ K S GTT T+ V I KN
Sbjct: 188 VKIACIGKPNVGKSTLINSLLMKKRMITSNKAGTTLDTV-----LVPIKYNYKN------ 236
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFKEL--IEEIVKADVIIHMIDATKGLHRGMEKLH 119
I IDTAG+ + + K EKF ++ ++ I K+ + + +IDA + + L
Sbjct: 237 -YIFIDTAGM----SKKKSKTNKIEKFCKIKTLQTIEKSHLTLLIIDAKDQISKQDLLLS 291
Query: 120 YMLKFRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLE----QEPILMSLVTYEGFNELL 175
++ + KP+I+VINK DL+ + + L+ ++KK+L+ + +S + EG EL
Sbjct: 292 SFIE-KSGKPLIIVINKCDLLSLKEKKNLENLIKKQLKCNFFSKIHFISALNNEGTVELF 350
Query: 176 KAL--AYYSQYAK 186
K++ +Y++ K
Sbjct: 351 KSIDTSYHTSQKK 363
>sp|Q9WZV1|ERA_THEMA GTP-BINDING PROTEIN ERA HOMOLOG >gi|7438444|pir||H72326 conserved
hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981380|gb|AAD35929.1|AE001751_9 (AE001751)
conserved hypothetical protein [Thermotoga maritima]
Length = 300
Score = 67.9 bits (163), Expect = 7e-11
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
VA+ G NVGKST +NA++G KV VS+ P TT+ I + T K+ +I
Sbjct: 8 VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIY-------TDKD-----SQI 55
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYMLK 123
I +DT G+ P L E K ++ + D+++ M+DA G + E + ++
Sbjct: 56 IFVDTPGIHKPLHR-----LGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAKIVN 110
Query: 124 FRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPIL--MSLVTYEGFNELLKAL 178
K II V NKID+ E+ + + E+ K +E + +S + EG E+L+ +
Sbjct: 111 DSGTKTIIAV-NKIDVAGEEKAKAVGELAKSMVENVVSVHYISALKGEGVFEVLEKI 166
>gb|AAF73946.1|AF233268_1 (AF233268) GTP-binding protein Era [Lactococcus lactis subsp.
cremoris]
Length = 303
Score = 67.9 bits (163), Expect = 7e-11
Identities = 46/142 (32%), Positives = 77/142 (53%), Gaps = 18/142 (12%)
Query: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63
VAI+G NVGKST MN ++G K++ +S+ P TT+ I+ + T +N ++I
Sbjct: 11 VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIY-------TTEN-----EQI 58
Query: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYMLK 123
+ IDT G+ P + G + + + L E DV++ M+ A + G + LK
Sbjct: 59 VFIDTPGIHKPHNAL-GDFMVQSAYSTLRE----CDVVLFMVAADEPRSTGENMIIERLK 113
Query: 124 FRYEKPIIVVINKIDLVPRERI 145
+ E P+I+V+NKID + +R+
Sbjct: 114 -KAEVPVILVVNKIDKIHPDRL 134
>pir||D75086 GTP-binding protein hflx PAB0722 - Pyrococcus abyssi (strain Orsay)
>gi|5458505|emb|CAB49993.1| (AJ248286) GTP-BINDING
PROTEIN HFLX [Pyrococcus abyssi]
Length = 423
Score = 67.5 bits (162), Expect = 9e-11
Identities = 48/161 (29%), Positives = 80/161 (48%), Gaps = 23/161 (14%)
Query: 2 IKVAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGAD 61
+ VA+ G N GKSTL+NAL G V ++ T TT +R+ + K+
Sbjct: 186 VLVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRGKM------------ 233
Query: 62 EIILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGMEKLHYM 121
+++ DT G D E F +EEIVKAD+I+ ++DA++ K
Sbjct: 234 -LLVTDTVGFIDGLPP-----FIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFAS 287
Query: 122 LKFRYE-----KPIIVVINKIDLVPRERIEKLKEIVKKRLE 157
L E +P+I+ +NKIDLV E +++ + ++++ L+
Sbjct: 288 LDVLRELKALDRPMIIALNKIDLVSEEDVQEKELLLRELLD 328
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.139 0.374
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65626286
Number of Sequences: 2977
Number of extensions: 2753945
Number of successful extensions: 13582
Number of sequences better than 1.0e-10: 19
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 13545
Number of HSP's gapped (non-prelim): 25
length of query: 186
length of database: 189,106,746
effective HSP length: 58
effective length of query: 128
effective length of database: 154,394,500
effective search space: 19762496000
effective search space used: 19762496000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)