BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1066 1589488 1589955 156 !not a gene!
         (156 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71141 hypothetical protein PH0342 - Pyrococcus horikoshii ...   104  5e-22

>pir||C71141 hypothetical protein PH0342 - Pyrococcus horikoshii
           >gi|3256733|dbj|BAA29416.1| (AP000002) 107aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 107
           
 Score =  104 bits (258), Expect = 5e-22
 Identities = 46/107 (42%), Positives = 67/107 (61%)

Query: 19  VLYLIFNFWIYKAGNFSCEHSCGQFVIASLHMVWXXXXXXXXXXXXXXFTYPLPRVMMIY 78
           +LY I N W+Y   N SC+HS G+ ++A L++VW                YP+P VMMI 
Sbjct: 1   MLYFILNGWVYIPSNLSCKHSSGELIVAPLNVVWIYMNVNVLIDFRFILAYPIPGVMMIN 60

Query: 79  DNYLNSVRLKPLIGRYIFAGSTVVNYNYQGQFISKPLVIFHHENYIL 125
            +YLN +  +P I R I + S+++NYN++G+FI+K  +IFHHE YIL
Sbjct: 61  YHYLNPISFQPFISRDILSCSSIINYNHEGKFITKAHMIFHHEYYIL 107


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.145    0.487 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57519981
Number of Sequences: 2977
Number of extensions: 1994268
Number of successful extensions: 4118
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4117
Number of HSP's gapped (non-prelim): 1
length of query: 156
length of database: 189,106,746
effective HSP length: 44
effective length of query: 112
effective length of database: 162,773,318
effective search space: 18230611616
effective search space used: 18230611616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 162 (67.5 bits)