BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1069 (PAB1069) DE:Hypothetical protein
         (179 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75011 hypothetical protein PAB1069 - Pyrococcus abyssi (st...   355  2e-97
pir||C71140 hypothetical protein PH0334 - Pyrococcus horikoshii ...   147  9e-35

>pir||F75011 hypothetical protein PAB1069 - Pyrococcus abyssi (strain Orsay)
           >gi|5459046|emb|CAB50532.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 179
           
 Score =  355 bits (902), Expect = 2e-97
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MISLVMWVDVAIYSTHNPPKLPKFRRARFEINGETLIFHLRPSGKIEVKVKEIDRVEGVL 60
           MISLVMWVDVAIYSTHNPPKLPKFRRARFEINGETLIFHLRPSGKIEVKVKEIDRVEGVL
Sbjct: 1   MISLVMWVDVAIYSTHNPPKLPKFRRARFEINGETLIFHLRPSGKIEVKVKEIDRVEGVL 60

Query: 61  LHFFDPPRKALKIDIGDRVVLVSAGKNPLAYDSDILLKFIHSLYSALIDGVVVKEGNIKG 120
           LHFFDPPRKALKIDIGDRVVLVSAGKNPLAYDSDILLKFIHSLYSALIDGVVVKEGNIKG
Sbjct: 61  LHFFDPPRKALKIDIGDRVVLVSAGKNPLAYDSDILLKFIHSLYSALIDGVVVKEGNIKG 120

Query: 121 SLRVIRTRDNTLEVIVVSDSGPVHLKNELNIENFKVRERIEELRSLVEFLKEDEQGQEQ 179
           SLRVIRTRDNTLEVIVVSDSGPVHLKNELNIENFKVRERIEELRSLVEFLKEDEQGQEQ
Sbjct: 121 SLRVIRTRDNTLEVIVVSDSGPVHLKNELNIENFKVRERIEELRSLVEFLKEDEQGQEQ 179


>pir||C71140 hypothetical protein PH0334 - Pyrococcus horikoshii
           >gi|3256725|dbj|BAA29408.1| (AP000002) 187aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 187
           
 Score =  147 bits (367), Expect = 9e-35
 Identities = 65/172 (37%), Positives = 117/172 (67%)

Query: 6   MWVDVAIYSTHNPPKLPKFRRARFEINGETLIFHLRPSGKIEVKVKEIDRVEGVLLHFFD 65
           M ++VA YS  +PPK PKF+ A+F+I+  TL+F ++P G+I + +++I ++EG +L FFD
Sbjct: 16  MLLEVATYSPLDPPKFPKFKMAKFKIDRNTLVFQIKPMGEISINIRDIRKIEGKILDFFD 75

Query: 66  PPRKALKIDIGDRVVLVSAGKNPLAYDSDILLKFIHSLYSALIDGVVVKEGNIKGSLRVI 125
           PPRK ++I++ +  +L++ G NPLAY  + LL F+ +LYS L++G  ++     G+L+VI
Sbjct: 76  PPRKGIEIELTNIRILITIGDNPLAYSKETLLNFLATLYSTLLNGAFIEYERQYGTLKVI 135

Query: 126 RTRDNTLEVIVVSDSGPVHLKNELNIENFKVRERIEELRSLVEFLKEDEQGQ 177
           +  DN  E+ ++++   + +K+   +EN +++ R+ E   L+ FL ++EQ Q
Sbjct: 136 KKVDNGYELALITEKKIIPVKDWKKVENPEIKTRVREFLELLNFLTQEEQEQ 187


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.142    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66381978
Number of Sequences: 2977
Number of extensions: 2704107
Number of successful extensions: 7083
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7081
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 189,106,746
effective HSP length: 54
effective length of query: 125
effective length of database: 156,788,448
effective search space: 19598556000
effective search space used: 19598556000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)