BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1075 (PAB1075) DE:Hypothetical protein
         (225 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75012 hypothetical protein PAB1075 - Pyrococcus abyssi (st...   457  e-128
pir||G71138 hypothetical protein PH0322 - Pyrococcus horikoshii ...   275  4e-73

>pir||H75012 hypothetical protein PAB1075 - Pyrococcus abyssi (strain Orsay)
           >gi|5459056|emb|CAB50542.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 225
           
 Score =  457 bits (1163), Expect = e-128
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MLTIEEVIGLIPEGGIMSIIQRDIESSGDKYGLLLLKKLLESDKFVFVFLYEPFTIFLKN 60
           MLTIEEVIGLIPEGGIMSIIQRDIESSGDKYGLLLLKKLLESDKFVFVFLYEPFTIFLKN
Sbjct: 1   MLTIEEVIGLIPEGGIMSIIQRDIESSGDKYGLLLLKKLLESDKFVFVFLYEPFTIFLKN 60

Query: 61  ISNIGVNIDNYLNKNLEIFDVFGTMNKIERKRPGIHILPGYMDDMIFIGKLREWAKAILD 120
           ISNIGVNIDNYLNKNLEIFDVFGTMNKIERKRPGIHILPGYMDDMIFIGKLREWAKAILD
Sbjct: 61  ISNIGVNIDNYLNKNLEIFDVFGTMNKIERKRPGIHILPGYMDDMIFIGKLREWAKAILD 120

Query: 121 KRELEREVWIMTYMSSGTCKLFANPLLTYKMIWFLREEGIKKVEPKTKTRTIITYSYPEC 180
           KRELEREVWIMTYMSSGTCKLFANPLLTYKMIWFLREEGIKKVEPKTKTRTIITYSYPEC
Sbjct: 121 KRELEREVWIMTYMSSGTCKLFANPLLTYKMIWFLREEGIKKVEPKTKTRTIITYSYPEC 180

Query: 181 PILEDTIYFSSDIVIETMVLDNKKVGIMTKGPMEGTIFELFKEGV 225
           PILEDTIYFSSDIVIETMVLDNKKVGIMTKGPMEGTIFELFKEGV
Sbjct: 181 PILEDTIYFSSDIVIETMVLDNKKVGIMTKGPMEGTIFELFKEGV 225


>pir||G71138 hypothetical protein PH0322 - Pyrococcus horikoshii
           >gi|3256713|dbj|BAA29396.1| (AP000002) 219aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 219
           
 Score =  275 bits (695), Expect = 4e-73
 Identities = 130/220 (59%), Positives = 170/220 (77%), Gaps = 5/220 (2%)

Query: 4   IEEVIGLIPEGGIMSIIQRDIESSGDKYGLLLLKKLLESDKFVFVFLYEPFTIFLKNISN 63
           IEE++  IPEGGI++IIQ+++ES GD++GLL+LK LLE++  VF+FLYEP   F+ N+ N
Sbjct: 4   IEELVSSIPEGGILAIIQKELESEGDRFGLLVLKHLLENENNVFLFLYEPLRTFMTNMEN 63

Query: 64  IGVNIDNYLNKNLEIFDVFGTMNKIERKRPGIHILPGYMDDMIFIGKLREWAKAILDKRE 123
           +G+N+D YL +NL IFDVFG+MNKIERK  G++ L GY+DD++F+ KL+EWA   L    
Sbjct: 64  LGINVDEYLGENLMIFDVFGSMNKIERKIKGVYKLSGYLDDVVFVSKLKEWAIKTLKTTN 123

Query: 124 LEREVWIMTYMSSGTCKLFANPLLTYKMIWFLREEGIKKVEPKTKTRTIITYSYPECPIL 183
           +    W  TY+SSG CKLF+NPLLTYK+IW LREE +K   PK    TIITYS  ECPIL
Sbjct: 124 I-ANFWFFTYLSSGICKLFSNPLLTYKLIWALREEILKGYRPK----TIITYSQLECPIL 178

Query: 184 EDTIYFSSDIVIETMVLDNKKVGIMTKGPMEGTIFELFKE 223
           E+T+Y +SDIV+ET +++ KKVGI+TKGP E  IFELFKE
Sbjct: 179 EETVYLASDIVLETRIINGKKVGIITKGPNENLIFELFKE 218


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.144    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84722126
Number of Sequences: 2977
Number of extensions: 3472819
Number of successful extensions: 6745
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6741
Number of HSP's gapped (non-prelim): 2
length of query: 225
length of database: 189,106,746
effective HSP length: 52
effective length of query: 173
effective length of database: 157,985,422
effective search space: 27331478006
effective search space used: 27331478006
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)